arpin (arpin)


Basic Information

Item Value
gene id arpin
gene name arpin
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70765545 ~ 70768009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165128.1
GACGTAGAATCAGGAAGTCACGGGATAGTTTTGCTTCGGTTTTTCGAGTATCAAAACGGTGTGGTTGTTGCTTTCTCTAGAGTAAAAAATGAGCCGAATTTATAACAATACGTCCTTGCAGAATAAACCTGTTCATAATGAAAAGATTGAGCACGCGTGGGCCCCCTCCTCATATCAGAGTGGTCTGGGTGTCATATTAGAGGGAAAGTTGGTTGATGTCTCACGCCATGTTATCACTGACGTCAACAATCAGAAGGACCGTTTCTATGTCCTATACATCAAACCTAGTCGAATCCACCAAAGGAAATTTGATGCTAAAGGAATGGAAATTGAACCAAACTTCAGTGATACCAAAAAGGTCAACACTGGTTATCTCATGTCATCATTCAAGGTGGAGGCTAAAGGAGAGACTGATTGCCTCACTGAGGTCCAGCTGGAAAACCTAGTGACCAAGGAGGATCTGGTTAAAGTGACAGGGAAACACTGTCTAAGTGGGACCTATGCTTTCTGGTACCCAGAGGGAGAGATGAGCAAGACTGAACTAGAAACAGGCCAGGACATTCGACTGAAAACCAAAGGCGATGGCCCATTTATTTTTTCCTTGGCCAAAGTCGATGGAGGCACAGTGACCAAATGCAATTTTGCCGGAGACAAAGAAGCAGGAGCATCGTGGACAGACAAAATAATGTCCAACAAATCCGATGCCAGCAGTGCAACGAAGTCTGAAGGCCATGGCGAGGGAGCAGATGAGGAGGAATGGGATGAATGAGGAGATGAATGGAATTGCACAGTAAAACCTCCTTATTCCTGTGATGGTTTGTACTCTACGGTTCCACCCGCTTAACATTGCTTGTGCAGCATATGCACACTAAAGAGGAAGAGGGtcgtttcattttttattcagcACTCCTTTTGTAATATAGAGTTCTCTACAAGAAGTTGACAAATCTGGCTATTGCAGTGTATCTTCGGTATAGGGGTGTACATGTATTGCTTTGAACCTGTCTTTGGTAAACGTCATACATGCTTTtcttctctactttctctctattGAAAATGTATCCTTGTTTGTAGAAGGGTACAAATGATATGTACTGCACATGTTAACCTTGTAATAAAGCACATGTCAATTTATCTGATGGGGTTGTTCTAATCATGTGTGTCATCCAAAATGTAAACCATCAATTGGGTAAGAGTGGTCATGCAAGGGCAGAGTTATAACTTTTATTAGTAGAGTAGCCATTGTCTGCTAATCAGATTattagtgtgtgcaaatgtatgaAGTTGCCAAATAGATGTAGGCTAAATTAAATCATGCATTCTCAAAAAAAAAAGATTCAAAACTGTTTGGGTTACCAGCATTAATGAATACAGTACTTGTGTACATGTAACAAATAAACTTAATGTC

Function

symbol description
arpin Involved in directional locomotion. Acts upstream of or within negative regulation of cell migration. Predicted to be located in lamellipodium. Is expressed in intestinal bulb. Orthologous to several human genes including ARPIN (actin related protein 2/3 complex inhibitor).

NR:

description
arpin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165128.1 True 1408 mRNA 0.41 6 70765545 70768009

Neighbor

gene id symbol gene type direction distance location
kmt5b LOC106560809 coding downstream 23910 70734177 ~ 70741635 (-)
chka LOC106560813 coding downstream 31665 70713189 ~ 70733880 (-)
LOC110501848 NA coding downstream 122958 70552263 ~ 70642587 (-)
LOC110495228 LOC106560819 coding downstream 218816 70402638 ~ 70546729 (-)
LOC118944152 NA coding downstream 224936 70540554 ~ 70540609 (-)
fam169b fam169b coding upstream 1131 70769140 ~ 70773282 (-)
LOC118941475 NA coding upstream 5883 70773892 ~ 70775981 (-)
ttc23 ttc23 coding upstream 158623 70926632 ~ 70945359 (-)
LOC118941478 NA coding upstream 336297 71104079 ~ 71105731 (-)
LOC110495479 mctp2 coding upstream 366256 71134265 ~ 71164057 (-)
G179141 NA non-coding downstream 73680 70691590 ~ 70691865 (-)
G179134 NA non-coding downstream 74911 70689253 ~ 70690634 (-)
G179139 NA non-coding downstream 80320 70684916 ~ 70685225 (-)
G178485 NA non-coding downstream 375960 70389273 ~ 70389585 (-)
G178484 NA non-coding downstream 376643 70386034 ~ 70388902 (-)
G179178 NA non-coding upstream 10427 70778436 ~ 70778692 (-)
G179233 NA non-coding upstream 74311 70842320 ~ 70842577 (-)
G179235 NA non-coding upstream 80622 70848631 ~ 70848836 (-)
G179236 NA non-coding upstream 81577 70849586 ~ 70849967 (-)
G179240 NA non-coding upstream 90291 70858300 ~ 70858508 (-)
LOC110494902 LOC106560839 other downstream 1061146 69648833 ~ 69767366 (-)
G177487 NA other downstream 1173823 69591135 ~ 69591722 (-)
G174505 NA other downstream 4072695 66692408 ~ 66692850 (-)
G173696 LOC106560906 other downstream 4374779 66375226 ~ 66390766 (-)
G179215 NA other upstream 137363 70905372 ~ 70906254 (-)
G179310 mef2a other upstream 230036 70998045 ~ 71070204 (-)

Expression


Co-expression Network