LOC118941475


Basic Information

Item Value
gene id LOC118941475
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70773892 ~ 70775981 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037732.1
AGACCTCAGGTAAGATCACCTCTTTTGTGAGAACTTTGCAAACAAGGTGGCAGTGAGAGCGAGAACAAGAGGAAGAGATAGATGAAGAGCGAGAGGAGTAGAACCAGGACAATAACAAAGAAGGGGACCAAGCAATAGACAGAGACATATTTCTGAAGACATTAGAGCCAGTTTGGTGGACCATGTCATAAATCATTGCCTGACGATAAGGGAGGTTGGGCAGAGAGTCCAGCCCAACCTAAGTCGCTACACGGTAGCATCCATAATATGGACATTTAGACTGGAAAACAGAACTGCCAGACGACCTCCTGAGGGTGGAAGGCAACGTCTGTTCACCATGAACAGGAACTGGCCATTGTCAATCTAGTGTTGGCAAACAACACCATCCGCCTACATCAACTAATGAGAGCAAATTATCGCAGATTCCACAACATTCAATAATATCAACCGTGTCAGTATGTCGACACTCTGCCGCATCTTACGATGGAGCAGCTGTCCAGGGTTCCATTTGAGAGGAACAGTGTTAGAGTCAAAGACCCTCACTATGACTATGTGCAAAGAGTCCTGGACGTTGATGCAGCTGCACAGCCTCATTAGTTTATTTCATTGATGAAGCTGAATTCAATCTATTTAAAACCAGGCATTGGGGCCGAAACGTTATAGAACAAACAGCTGTTatgaatgtccctgggcagcgcAGGGGAAATATCCCCTTGTGTGCCGCCATTAGTCTGCAAGGAGTTCTCCATCACCATGTcaccctcggtccctacaatactgcacacataatcatatttctggatgcactACATAATGTAGTTGTACAGGACAGACCAGAGCAGCCCAGGTTTGTTGTCATCTGGGATAATGTTAATTTCCATCGGGTTGCTCTGGTCAGGGACTGGTTCACTAACCACAATAACTTCACAGTTGTACAGGACGGACCAGAGCAGCCCAGGTTCGTTGTCATCTGGGATAATGTTAATTTCCACCGGGCTGCTCTGGTCAGGGACTGGTTCACTAACCACAATAACTTCACAGTTGTATACTTGCCTCCTTACTCCCCATTTCTCAATCCGATTGAGGAATTATTTTCGGCTTGGCGTTAGAAAGTGTATGACCGCCAACCACATGCCCGCCTGCAAGCAATGGAATAGGCATGTGGAGACATTGAGGTGGGGTCAGTCCAGTGTTGGATATGGCACGCAAGGCGATATTTTCCCCGTTGCCTAGCCAGGGGGGATATTGCGTGTGATGTGGATGAGGTGATGTGGCCAGACCCTAACAGAAGGTGGGATCCATAAAACATCCACCCCATCCATTACAATactatttttttttgtttaccaTTGCACTGTAAttttactgtattttttttttcctgTGAGTTTACAGTAACATATTGTAttgattactgtactgtaattctACTTTGTGTTTATTTGTTGTTGTAAAAACCTGCAATGGCAAAAAATAAGctgtctacatttttttctgaagCCTTTCTATTTTGTGTTCATTGAAATGTGAGTAGATGTGCTGCACTGGAACAATCTTTCACAGAAGCCTGTATGAGAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107663003

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037732.1 True 1578 mRNA 0.44 3 70773892 70775981

Neighbor

gene id symbol gene type direction distance location
fam169b fam169b coding downstream 610 70769140 ~ 70773282 (-)
arpin arpin coding downstream 5883 70765545 ~ 70768009 (-)
kmt5b LOC106560809 coding downstream 32257 70734177 ~ 70741635 (-)
chka LOC106560813 coding downstream 40012 70713189 ~ 70733880 (-)
LOC110501848 NA coding downstream 131305 70552263 ~ 70642587 (-)
ttc23 ttc23 coding upstream 150651 70926632 ~ 70945359 (-)
LOC118941478 NA coding upstream 328325 71104079 ~ 71105731 (-)
LOC110495479 mctp2 coding upstream 358284 71134265 ~ 71164057 (-)
LOC110495486 LOC105023478 coding upstream 646028 71422009 ~ 71432121 (-)
LOC110495580 LOC106561145 coding upstream 1236277 72012258 ~ 72050185 (-)
G179141 NA non-coding downstream 82027 70691590 ~ 70691865 (-)
G179134 NA non-coding downstream 83258 70689253 ~ 70690634 (-)
G179139 NA non-coding downstream 88667 70684916 ~ 70685225 (-)
G178485 NA non-coding downstream 384307 70389273 ~ 70389585 (-)
G178484 NA non-coding downstream 384990 70386034 ~ 70388902 (-)
G179178 NA non-coding upstream 2455 70778436 ~ 70778692 (-)
G179233 NA non-coding upstream 66339 70842320 ~ 70842577 (-)
G179235 NA non-coding upstream 72650 70848631 ~ 70848836 (-)
G179236 NA non-coding upstream 73605 70849586 ~ 70849967 (-)
G179240 NA non-coding upstream 82319 70858300 ~ 70858508 (-)
LOC110494902 LOC106560839 other downstream 1069493 69648833 ~ 69767366 (-)
G177487 NA other downstream 1182170 69591135 ~ 69591722 (-)
G174505 NA other downstream 4081042 66692408 ~ 66692850 (-)
G179215 NA other upstream 129391 70905372 ~ 70906254 (-)
G179310 mef2a other upstream 222064 70998045 ~ 71070204 (-)
G179754 NA other upstream 698391 71474372 ~ 71474979 (-)

Expression


Co-expression Network