ttc23 (ttc23)


Basic Information

Item Value
gene id ttc23
gene name ttc23
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70926632 ~ 70945359 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570677.2
aatcagggtctgtagtgactctgaGTTTCAgtcccttagaccgctgcgtcactcgaaAGCCCCAGTCCCGACAAACCATCACTATCACCACCGGTAACAAAATACACAAAATAAGGGTAGGCCAATCATTTAGTAAAAATTCAGCAATAGCCTAAAAAGCTAGCGTACAATAATCAACACGGCATGTTCCCCATCATTTATTTTCAGCTACATCCTGCCACCTTATCAGCTGTTGTCAGACACACCCGTGTCTGAGAAGTAGGCCTTATTTCACATATTCATATTTTTATTAATTCgagctaaaaaaaaaacaaagcctGATTTAACATAAAACAATTTGTCTGCACAAATATTTGCACGTGCATAAAGTTGGTCTGGTGCTGTAGAACATTGTCGGTCACGTGACATTTTATCAGGAAGCTACATTTAGCGCTTTTTGATTTTTAAGTTTTATATTAGTGGATGCTTGCTTGTATGAACACCCCGAGCGAACTGTTTGTGGTTATATGATGAATACAACCaacaaaataaaagttaaatgtCGCGCATTGATTTATGATGAATCTTTGCTGATTATGACGCATACTGCCGTATCCACGACAACGGATGTAAAAAAGAAACAAACATGGCATAAAATTATTCTGCAAaggtttctatttttttttttaccgaaAAATGAATTATAATTATCCAATGACAAACACACGCTCCAAACCAGGACTTGGATTAGTTGACGGTGGAGAATCTGATAAAGGACTGGCAAGTGTCTCTCAGAGAGGAATGGATGACACGGGAGAGTCGATGATGATGACTCCTGAGGAAAAACTTACCCAGTATGATAGCAGGGCCCAAGCCTTTGCAGACACTCAACAGTTTGATGCTTGTATCCAGGACCTTGTCCGCTGTGTGGCTCTTACAAGACTGGTATATGGAGATGGGCAATTGAAACTAGCCCAAGCCCATGTCAGACTGGCTAAAGCATACCTACAGTTTAAAGGCTGGGCAGTGCAGGCCCAGGAGCACTCAGCCAGAGCCAGTGACCTGCTCCCCTTCTGCACCCCCAACTCCACCAGCCGGGAGGACAGGGTCCACATTCTCACCTGTCTCCTCAACATATACCTAACACAGGGAGGCGCCACTCTGCTGCTGGCAAATCTCGAGGAAGCAGAGTATAATCATCAAAAAGCAGAGAGGATTGTGGTCGAACTTCATCAGCTAGGAGGCATGAGCAAGGAGGAGAAAATGGAGACTGAGTTTGAGATATCCACATCTCTGTCCAGGGTGTACCAGCGGCAAGGCAGGTCAGAGGAGGCCCTGGGTCAGTGTGAGAGTAGTTTGCAGCTGCTGGAGGGCTGGGAAAGGCCAGGTCAGGCCTGCTCCGTCTATAAGGACATGGCTGCCATCGAACAGGCCCAGGGCCGCCTCGACAGAGCTTTAGAGCACCTCTCTAAGGCTCATGCCATAGCTCTGAGTCAGAGCCCTGGGGGTCTGGATGGGGCTCACATCGCTCACAGCCTGGCCTTGGCCTACTCTACTGTAGCAGAGCCCCACCACAATGACTCAGCAGCACACTACTATGAGGAGAGTCTGAGTACATACAGGAGCTCCCTAGGCCCACAGGCTACTGTCACTCTCAACCTTCAGGATGACTACTGTcgcttcctcctcctcactgggCAGCAAGAGAGGTGTGTAGAGATCCAGAGGGAGTCCCTGGCCTTGAAGAGAGAGACGTTTGGTGACCTGAGTCCTGAGGTGGCTGACACTCTGCAGCTGATTGGAGGGGTGCAGATGACCCAGGGCCAGGTGAAGCATGCCCATAGGACCATGAGCAAGtgtctGGACATTCAGAGTATCCTGTATGGCCCTCAGCATAAGAAGACAAGAGCCACGCAGAAGACAGTGGACATGCTGGCCCAGGCGCCCGAGGTTgctgggagacagaggagggagggtagCCTGAAAACAAGGCCTCCTTTCTGTGCAGTCCTACCTTCTTATAGCAAGGCAGGAGGAAACGCCAACATGTCGGACTCCTAACATGCCATCAGAGCTGAGCTGGATGAATGAGCCTTGGCCCTCTAAGAAAATAAAGCCTCTCCCTTTGTCGCAAGGAGAAATTCTATGAATTGGAAATGAACCAAGAAGACCCCTGGCAATCCTTTCTGTTTTCATTGTGCATTCTCTGAGAAATTAGTGTCAGGCTGTTGGCAGGACTACGCAGACAGAACTCCTCAGAATGAAGGGAAGGTTCTACAGCTCAGGAGAAGAGCTGCAGCGGAGGACTCTGtcccttccctgtctctctgtgtgtacaaCGAAGACGTTCAATGTTATGTTTATGTTGTATTAATAAAGACTCAAACTCAGGAAACACA
>TU203593
GATTGTGGTCGAACTTCATCAGCTAGGAGGCATGAGCAAGGAGGAGAAAATGGAGACTGAGTTTGAGATATCCACATCTCTGTCCAGGGTGTACCAGCGGCAAGGCAGGGCCGCCTCGACAGAGCTTTAGAGCACCTCTCTAAGGCTCATGCCATAGCTCTGAGTCAGAGCCCTGGGGGTCTGGATGGGGCTCACATCGCTCACAGCCTGGCCTTGGCCTACTCTACTGTAGCAGAGCCCCACCACAATGACTCAGCAGCACACTACTATGAGGAGAGTCTGAGTACATACAGGAGCTCCCTAGGCCCACAGGCTACTGTCACTCTCAACCTTCAGGATGACTACTGTcgcttcctcctcctcactgggCAGCAAGAGAGGTGTGTAGAGATCCAGAGGGAGTCCCTGGCCTTGAAGAGAGAGACGTTTGGTGACCTGAGTCCTGAGGTGGCTGACACTCTGCAGCTGATTGGAGGGGTGCAGATGACCCAGGGCCAGGTGAAGCATGCCCATAGGACCATGAGCAAGtgtctGGACATTCAGAGTATCCTGTATGGCCCTCAGCATAAGAAGACAAGAGCCACGCAGAAGACAGTGGACATGCTGGCCCAGGCGCCCGAGGTTgctgggagacagaggagggagggtagCCTGAAAACAAGGCCTCCTTTCTGTGCAGTCCTACCTTCTTATAGCAAGGCAGGAGGAAACGCCAACATGTCGGACTCCTAACATGCCATCAGAGCTGAGCTGGATGAATGAGCCTTGGCCCTCTAAGAAAATAAAGCCTCTCCCTTTGTCGCAAGGAGAAATTCTATGAATTGGAAATGAACCAAGAAGACCCCTGGCAATCCTTTCTGTTTTCATTGTGCATTCTCTGAGAAATTAGTGTCAGGCTGTTGGCAGGACTACGCAGACAGAACTCCTCAGAATGAAGGGAAGGTTCTACAGCTCAGGAGAAGAGCTGCAGCGGAGGACTCTGtcccttccctgtctctctgtgtgtacaaCG
>TU203594
GACAACGGATGTAAAAAAGAAACAAACATGGCATAAAATTATTCTGCAAaggtttctatttttttttttaccgaaAAATGAATTATAATTATCCAATGACAAACACACGCTCCAAACCAGGACTTGGATTAGTTGACGGTGGAGAATCGGTGTACCAGCGGCAAGGCAGGGCCGCCTCGACAGAGCTTTAGAGCACCTCTCTAAGGCTCATGCCATAGCTCTGAGTCAGAGCCCTGGGGGTCTGGATGGGGCTCACATCGCTCACAGCCTGGCCTTGGCCTACTCTACTGTAGCAGAGCCCCACCACAATGACTCAGCAGCACACTACTATGAGGAGAGTCTGAGTACATACAGGAGCTCCCTAGGCCCACAGGCTACTGTCACTCTCAACCTTCAGGATGACTACTGTcgcttcctcctcctcactgggCAGCAAGAGAGGTGTGTAGAGATCCAGAGGGAGTCCCTGGCCTTGAAGAGAGAGACGTTTGGTGACCTGAGTCCTGAGGTGGCTGACACTCTGCAGCTGATTGGAGGGGTGCAGATGACCCAGGGCCAGGTGAAGCATGCCCATAGGACCATGAGCAAGtgtctGGACATTCAGAGTATCCTGTATGGCCCTCAGCATAAGAAGACAAGAGCCACGCAGAAGACAGTGGACATGCTGGCCCAGGCGCCCGAGGTTgctgggagacagaggagggagggtagCCTGAAAACAAGGCCTCCTTTCTGTGCAGTCCTACCTTCTTATAGCAAGGCAGGAGGAAACGCCAACATGTCGGACTCCTAACATGCCATCAGAGCTGAGCTGGATGAATGAGCCTTGGCCCTCTAAGAAAATAAAGCCTCTCCCTTTGTCGCAAGGAGAAATTCTATGAATTGGAAATGAACCAAGAAGACCCCTGGCAATCCTTTCTGTTTTCATTGTGCATTCTCTGAGAAATTAGTGTCAGGCTGTTGGCAGGACTACGCAGACAGAACTCCTCAGAATGAAGGGAAGGTTCTACAGCTCAGGAGAAGAGCTGCAGCGGAGGACTCTGtcccttccctgtctctctgtgtgtacaaCG
>TU203595
GACAACGGATGTAAAAAAGAAACAAACATGGCATAAAATTATTCTGCAAaggtttctatttttttttttaccgaaAAATGAATTATAATTATCCAATGACAAACACACGCTCCAAACCAGGACTTGGATTAGTTGACGGTGGAGAATCTGATAAAGGACTGGCAAGTGTCTCTCAGAGAGGAATGGATGACACGGGAGAGTCGATGATGATGACTCCTGAGGAAAAACTTACCCAGTATGATAGCAGGGCCCAAGCCTTTGCAGACACTCAACAGTTTGATGCTTGTATCCAGGACCTTGTCCGCTGTGTGGCTCTTACAAGACTGGTATATGGAGATGGGCAATTGAAACTAGCCCAAGCCCATGTCAGACTGGCTAAAGCATACCTACAGTTTAAAGGCTGGGCAGTGCAGGCCCAGGAGCACTCAGCCAGAGCCAGTGACCTGCTCCCCTTCTGCACCCCCAACTCCACCAGCCGGGAGGACAGGGTCCACATTCTCACCTGTCTCCTCAACATATACCTAACACAGGGAGGCG

Function

symbol description
ttc23 Orthologous to human TTC23 (tetratricopeptide repeat domain 23).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570677.2 False 2378 mRNA 0.48 11 70926632 70945359
TU203593 False 1012 TUCP 0.53 8 70926690 70938829
TU203594 False 1073 TUCP 0.51 8 70926690 70944761
TU203595 True 537 TUCP 0.47 4 70943627 70944761

Neighbor

gene id symbol gene type direction distance location
LOC118941475 NA coding downstream 150651 70773892 ~ 70775981 (-)
fam169b fam169b coding downstream 153350 70769140 ~ 70773282 (-)
arpin arpin coding downstream 158623 70765545 ~ 70768009 (-)
kmt5b LOC106560809 coding downstream 184997 70734177 ~ 70741635 (-)
chka LOC106560813 coding downstream 192752 70713189 ~ 70733880 (-)
LOC118941478 NA coding upstream 158947 71104079 ~ 71105731 (-)
LOC110495479 mctp2 coding upstream 188906 71134265 ~ 71164057 (-)
LOC110495486 LOC105023478 coding upstream 476650 71422009 ~ 71432121 (-)
LOC110495580 LOC106561145 coding upstream 1066899 72012258 ~ 72050185 (-)
LOC100135856 LOC100135856 coding upstream 1125122 72070481 ~ 72090783 (-)
G179216 NA non-coding downstream 21377 70903945 ~ 70905255 (-)
G179252 NA non-coding downstream 51463 70874750 ~ 70875169 (-)
G179249 NA non-coding downstream 55630 70870800 ~ 70871002 (-)
G179240 NA non-coding downstream 68124 70858300 ~ 70858508 (-)
G179236 NA non-coding downstream 76665 70849586 ~ 70849967 (-)
G179305 NA non-coding upstream 41739 70987098 ~ 70987358 (-)
G179310 mef2a non-coding upstream 55274 70998045 ~ 71070204 (-)
G179320 NA non-coding upstream 61330 71006689 ~ 71007918 (-)
G179311 mef2a non-coding upstream 134154 71079513 ~ 71093345 (-)
G179372 NA non-coding upstream 155160 71100519 ~ 71100755 (-)
G179215 NA other downstream 20378 70905372 ~ 70906254 (-)
LOC110501848 NA other downstream 365777 70552263 ~ 70642587 (-)
LOC110494902 LOC106560839 other downstream 1222233 69648833 ~ 69767366 (-)
G177487 NA other downstream 1334910 69591135 ~ 69591722 (-)
G179754 NA other upstream 529013 71474372 ~ 71474979 (-)
G180716 NA other upstream 1165609 72110968 ~ 72111663 (-)
c2cd4a LOC106561196 other upstream 1927385 72833292 ~ 72877678 (-)

Expression


Co-expression Network