XLOC_020686


Basic Information

Item Value
gene id XLOC_020686
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1156430 ~ 1168291 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042241
ATGGCGTCGAGTTCAGAAGCCGGCAGGAGTAGTCCAGATCACGATCGCCCTAACATGAGCGATCTGAGGATTGTTCTGATAGGCAAGAATGCATCAGAAAACAGCCGAGTGGAAAACTTTATCAAGAGTGGACCAGCAGCAGTGTTTGACAGTGGAGCTTCATTTTATGTCAAGCAGACCAGATTCAGTGGACAGGAGAGAAACATCAGAGTCTTCCACTTTCCTCATCTGCTTCAGACACATCTCAATCAGCTGCAGGTCATTCAGGCAGTGAGAGAGTGTCTGTCTCAGTGTGCTCCAGGCCCTCATGTGATCATACTTGTACTGCAGTATAATGACTTCACTGAGCTGGACAGAGACAGAGTGAAATATATACTGAGTCTCTTCAGTCAGAAGGCCATCAAACACACTATAGTGCTGACCACTGATGAGGAGACACttaggtttgttttttttaaaacgaATAAGGCTGTTCAAAATGTAATAAAGGACTGTGAAGGAAGACATCTTCGGTTTGATACAAACCCACAATCTCACACTAAATTGTTTATAAAGATAGAGAAGATCCTCAAGGAAGAATACAAAGAATTTCACATCTGTGGTGATGAAGGTGATGGGTCATCAGTGGATGGAGATTGTGGTTCAGCCAGAGGAGATTACACAGAAGATGAGAGCTCAAAAACAGGAAGTGATGGAAGAGAGGTTCTGAACCTGAATCTGGTTGTTTGTGGGAGTAACAGAAGATTAAAATCCTCCATGTCAGAGCTGTTCCTGAGAGAAAGCAGGAGAGGATCTGTGGTCGGTTCAGAGTTTACGAGGACAGATGTGGATCTTCATGGTCGTCTGATCAGTCTGATGGAGTTTCCAACTCTCATTAATCTCTCAGAGGAGGAAGTGATGCGTCAGACGCTCCGCTGTGTGTCTCTCTGCCATCCTGGAGTTCATCTGTTCATCCTCATCATTCCTGATGGTCCTCTCAATAATGAAGACCGAGCAGAAGTGGAGAAGATGCAGATTTTCAGCTTCAAAATCAACAAGCACATGATGATCCTCATACAGCAGGACTCAGAGCTTCATACAGCAGAACTCAGTGAAGAAACTCAGACGGTCATTCAGAGTCTTAGTGGACGACATCATTTCATTAACCCAAACACACCAGTGTCCACATTGATGGAGAAGATTGATCAGATGGTGGAAGAAAACAAAGGAGAGGTTTTCTCAGCAGAGACATTTCTGGAGCCGCAGATGGAGAAACACCTGAAATATGATGAAAAACATAGCGGAATCAACTCATTAAAGACATTTCAGTCACAAGATTCAAGAGAAAGACCTAATGAAGTGAGAATTGTTCTTCTGGGTAAAACTGGAGTTGGGAAGAGTGCAACTGGAAACACCATCTTAGGAAGAAAAGCATTTACATCAGACATCTCTCAAAGCTCTGTTACTAAAGAGTGTCAGAAGGTCACAGTTCAAGTCAATAGTCAAAACATCACTGTGATCGACACTCCAGGACTGTTTGATACTCAACTCAGTAATGAAGAAATCAAGAGAGAAATCAGCAACTGCATCTCCATGATCCTGCCTGGACCTCACGTGTTTCTGCTGGTGATTTCACTGGGAAGATTCACTCAAGAAGAGCAAGAGTCAGTGAAGATCATCCAAGAAATATTTGGAGAAAACTCTTTAAAATACACAATAGTGCTGTTCACCAGAGGAGACGATCTGAGGAACAAAACTATTGGAGACTTTCTAGGAAACACTGACTCTGCTCTTAAGAACCTCACTGAAACATGTGGAAACAGAGTCCATGTGTTCAACAATAATCAGACTAAAGACCCAACACAAGTGTCTGATCTACTGATGAAGATAGAGAAGATGGTGAAGACAAATGGAGACAGTTATTACTCATGTAAGATGttcagagagatggagagagaaataCAAGAGAAACAAATGATGATAATGGAGGAGAAAGTGGAACAactgaagagagaaagagaagaactGATGAAGAAACATAAGGAAGAGAAAAAGAGGATGATGGAAGAAGAACGGGTGAAGCATGAAAAGGAGAAAAAGAGAAGAGAAGATGAATATAGAGAAAGAGATGAACTGATAAAGAAACATGAGGAAGAGAAAAAGAGGATGATGGAAGAAGAACGGGTGAAGCATGAAAAGGAGAAAAAGAGAAGAGAAGATGAATATAGAGAAAGAGAAGAACTGATAAAGAAACATGAGGAAGAGAAAAAGAGGATGATGGAAGAAGAACGGGTGAAGCATGAAAAGGAGAAAAAGAGAAGAGAAGATGAATATAGAGAAAGAGAAGAACGAGTTAATAGAGATATAAAAGAAGAGAGAAAAATGCAAGAGGAAATGAGGAGCGAAAAAGAGAGAATGATGAAGGAACACACAGAAGAGAAAAAGAGGGAGATGAAAATACACGAAGAGGAGAAAAAAAGAAGGGAAGAAGAATTAAGAGTGAAAGAAGTTCAATATAAAAGAGACATTAAAGACATTAAGGATCAAGagaaaaatacaaaagagaaGTTGAAGAGACTACAAGAGGAATGGGAGAAACAGAAGCAGCAGGAAAAACAAAGACAAGAAAAAGATGATGAGAAAAGACGACAAAAGGAACAGGACATGTGggaaaaatataatcaaatgctaaaaaaagacaaagaaaggATTATAATGatagagaaagaaagacagaatcaTGATAAAGAGAGATTGAAAAGAGAAGAGGAATTTAAGGAGAGAGAAGAACAATATAAAACAGagataaagaaagaaagagaagaatGGGAACGACAGAAACAACATGAAAGACAAAGAAGAGAAGAAGAGGATGAGAGAAGGCGAAAGAAAGAAGAGGATATGTTTTATGACTTTGACCAGAGACTTAaacaagagaaagagagaatgatgatgatgatagagGAAGAACGACGAAACAATAATCAAGATAGAAAGAAAAGAGAAGAGGATTTTAGAGAGAAAGAAGAAGAATGCAAAAAAGAGATGAAGAGAGAGCGAGAATATTGGAGACAAAGAAGAGATGAGGAGGAGGACAGAAGGAGAAAAATAGAAGAGGACACGTGGGATGAATATTACCAAAAACTTaaacgagagagagaaagaagactGAGAGAGAAAGAAGATCTACAGCTCAACCACGAATTAGAGAgagaaagaattaaaaaaaatatggagGAAAACAGGCTGAAGCATAGC
>TCONS_00040895
CATCATTCCTGATGGTCCTCTCAATAATGAAGACCGAGCAGAAGTGGAGAAGATGCAGATTTTCAGCTTCAAAATCAACAAGCACATGATGATCCTCATACAGCAGGACTCAGAGCTTCATACAGCAGAACTCAGTGAAGAAACTCAGACGGTCATTCAGAGTCTTAGTGGACGACATCATTTCATTAACCCAAACACACCAGTGTCCACATTGATGGAGAAGATTGATCAGATGGTGGAAGAAAACAAAGGAGAGGTTTTCTCAGCAGAGACATTTCTGGAGCCGCAGATGGAGAAACACCTGAAATATGATGAAAAACATAGCGGAATCAACTCATTAAAGACATTTCAGTCACAAGATTCAAGAGAAAGACCTAATGAAGTGAGAATTGTTCTTCTGGGTAAAACTGGAGTTGGGAAGAGTGCAACTGGAAACACCATCTTAGGAAGAAAAGCATTTACATCAGACATCTCTCAAAGCTCTGTTACTAAAGAGTGTCAGAAGGTCACAGTTCAAGTCAATAGTCAAAACATCACTGTGATCGACACTCCAGGACTGTTTGATACTCAACTCAGTAATGAAGAAATCAAGAGAGAAATCAGCAACTGCATCTCCATGATCCTGCCTGGACCTCACGTGTT
>TCONS_00040896
AATTTCGGTTTCAAGCTATGACGTTAAAGTGCTGAAATGGCGTCGAGTTCAGCAGAAGCCGGCAGGAGTAGTCCAGATCACGATCGCCCTAACATGAGCGATCTGAGGATTGTTCTGATAGGCAAGAATGCATCAGAAAACAGCCGAGTGGAAAACTTTATCAAGAGTGGACCAGCAGCAGTGTTTGACAGTGGAGCTTCATTTTATGTCAAGCAGACCAGATTCAGTGGACAGGAGAGAAACATCAGAGTCTTCCACTTTCCTCATCTGCTTCAGACACATCTCAATCAGCTGCAGGTCATTCAGGCAGTGAGAGAGTGTCTGTCTCAGTGTGCTCCAGGCCCTCATGTGATCATACTTGTACTGCAGTATAATGACTTCACTGAGCTGGACAGAGACAGAGTGAAATATATACTGAGTCTCTTCAGTCAGAAGGCCATCAAACACACTATAGTGCTGACCACTGATGAGGAGACACttaggtttgttttttttaaaacgaATAAGGCTGTTCAAAATGTAATAAAGGACTGTGAAG

Function

GO:

id name namespace
GO:0140115 export across plasma membrane biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000098347 ENSDARG00000104718

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042241 False 3237 lncRNA 0.40 5 1156430 1168255
TCONS_00040895 False 642 processed_transcript 0.42 2 1158069 1159749
TCONS_00040896 True 538 mRNA 0.44 3 1164656 1168291

Neighbor

gene id symbol gene type direction distance location
XLOC_020685 si:ch1073-15f12.3 coding downstream 76657 1073413 ~ 1079773 (-)
XLOC_020684 NA coding downstream 132899 1018345 ~ 1023531 (-)
XLOC_020683 cacna1sa coding downstream 187946 912450 ~ 968484 (-)
XLOC_020682 KCTD20 coding downstream 245504 898131 ~ 910926 (-)
XLOC_020681 cept1b coding downstream 274705 866681 ~ 881725 (-)
XLOC_020687 NA coding upstream 13793 1182084 ~ 1182479 (-)
XLOC_020688 ampd2a coding upstream 37496 1205787 ~ 1245226 (-)
XLOC_020689 CU570769.4 coding upstream 61615 1229906 ~ 1230022 (-)
XLOC_020690 NA coding upstream 92659 1260950 ~ 1269440 (-)
XLOC_020691 NA coding upstream 98700 1266991 ~ 1290856 (-)
XLOC_020676 NA non-coding downstream 395544 739300 ~ 760886 (-)
XLOC_020675 NA non-coding downstream 421186 733244 ~ 735244 (-)
XLOC_020673 NA non-coding downstream 451523 700213 ~ 704907 (-)
XLOC_020672 NA non-coding downstream 458926 659917 ~ 697504 (-)
XLOC_020692 NA non-coding upstream 147437 1315728 ~ 1316773 (-)

Expression


Co-expression Network