LOC118941478


Basic Information

Item Value
gene id LOC118941478
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 71104079 ~ 71105731 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037743.1
CAACTCCTATGATATGTGTTGCCCCCCGTTTGAAAGCCTGATGATACATTTGTACACTGATTTATTCCAGGAATGAAGGACTCGTCTGAAGAACTCAATCCATATTATTAGTGTGGTTCGCTGGGTTCTGAGAAATTTCCTCGATTTTGTGAAATCTGCCCATCTGTGAAACGAATTTGAAATACAGACGCCCTGGAACATGCCCAGAATGTTCATGTGACAGTGTGTCGTGAAGAATCAGGATGGACATTGCTATGAAAAGTGTGCAAGCGCCAGACAGAAGAGACTGAGCGAAATAAACGTTGTTCACAAGGTACACATGTTGACAGAGTCGAGAGGATCCCTCAGACTCCAGGATGGGAAATGCTTAACAAGAAATAAAAAGGTGGAGACACAGAAGGATACCATGAGACCCTCTGTTTTATTTTAAATAGTTAATCTGTTGACATTTTATATTCTGACTTGTAACGTTAATGTTTAAAATAGGTCGAAAAAGACACCCCCTGTTTATTTAaattagctaggctactcacTATACCAATGGTAGGCTACAGATTTGAGTCACTGCGGTTAAAATTGTTTTCCCAATGTATCTTTctattacattacattttgttCTTACTATGTATTACATGTTTGAGGAGAGTGTGCTATAAATGTTTGCAACTCGTTAATAAATAGGCAGAATGTT
>TU203726
TGACAGTGTGTCGTGAAGAATCAGGATGGACATTGCTATGAAAAGTGTGCAAGCGCCAGACAGAAGAGACTGAGCGAAATAAACGTTGTTCACAAGATCCCTCAGACTCCAGGATGGGAAATGCTTAACAAGAAATAAAAAGGTGGAGACACAGAAGGATACCATGAGACCCTCTGTTTTATTTTAAATAGTTAATCTGTTGACATTTTATATTCTGACTTGTAACGTTAATGTTTAAAATAGGTCGAAAAAGACACCCCCTGTTTATTTAaattagctaggctactcacTATACCAATGGTAGGCTACAGATTTGAGTCACTGCGGTTAAAATTGTTTTCCCAATGTATCTTTctattacattacattttgttCTTACTATGTATTACATGTTTGAGGAGAGTGTGCTATAAATGTTTGCAACTCGTTAATAAATAGGCAGAATGTTTCCACTTTTTAAGGTATATTTTTCAGCAGTTATAAATGTTGGTAACTCATTTGTTAATGGTCAGATGATTGTCACTTTAAAATAGGGTATCATTTTAGCAGTTATAAATGTTGATGACTCAGTTATAAATGTTCATAGGTCTGACACTTTAAAATAAGGTATACGTGTAACAGTTTACATGATGGTAAATCATTTATAGATGATTTGAGAGCTCACTCAGTATTGGG
>TU203722
TGACAGTGTGTCGTGAAGAATCAGGATGGACATTGCTATGAAAAGTGTGCAAGCGCCAGACAGAAGAGACTGAGCGAAATAAACGTTGTTCACAAGGTACACATGTTGACAGAGTCGAGAGGATCCCTCAGACTCCAGGATGGGAAATGCTTAACAAGAAATAAAAAGGTGGAGACACAGAAGGATACCATGAGACCCTCTGTTTTATTTTAAATAGTTAATCTGTTGACATTTTATATTCTGACTTGTAACGTTAATGTTTAAAATAGGTCGAAAAAGACACCCCCTGTTTATTTAaattagctaggctactcacTATACCAATGGTAGGCTACAGATTTGAGTCACTGCGGTTAAAATTGTTTTCCCAATGTATCTTTctattacattacattttgttCTTACTATGTATTACATGTTTGAGGAGAGTGTGCTATAAATGTTTGCAACT
>TU203725
TGACAGTGTGTCGTGAAGAATCAGGATGGACATTGCTATGAAAAGTGTGCAAGCGCCAGACAGAAGAGACTGAGCGAAATAAACGTTGTTCACAAGATCCCTCAGACTCCAGGATGGGAAATGCTTAACAAGAAATAAAAAGGTGGAGACACAGAAGGATACCATGAGACCCTCTGTTTTATTTTAAATAGTTAATCTGTTGACATTTTATATTCTGACTTGTAACGTTAATGTTTAAAATAGGTCGAAAAAGACACCCCCTGTTTATTTAaattagctaggctactcacTATACCAATGGTAGGCTACAGATTTGAGTCACTGCGGTTAAAATTGTTTTCCCAATGTATCTTTctattacattacattttgttCTTACTATGTATTACATGTTTGAGGAGAGTGTGCTATAAATGTTTGCAACT
>TU203724
TGACAGTGTGTCGTGAAGAATCAGGATGGACATTGCTATGAAAAGTGTGCAAGCGCCAGACAGAAGAGACTGAGCGAAATAAACGTTGTTCACAAGGTACACATGTTGACAGAGTCGAGAGGATCCCTCAGACTCCAGGATGGGAAATGCTTAACAAGAAATAAAAAGGTGGAGACACAGAAGGATACCATGAGACCCTCTGTTTTATTTTAAATAGTTAATCTGTTGACATTTTATATTCTGACTTGTAACGTTAATGTTTAAAATAGGTCGAAAAAGACACCCCCTGTTTATTTAaattagctaggctactcacTATACCAATGGTAGGCTACAGATTTGAGTCACTGCGGTTAAAATTGTTTTCC
>TU203727
TGACAGTGTGTCGTGAAGAATCAGGATGGACATTGCTATGAAAAGTGTGCAAGCGCCAGACAGAAGAGACTGAGCGAAATAAACGTTGTTCACAAGATCCCTCAGACTCCAGGATGGGAAATGCTTAACAAGAAATAAAAAGGTGGAGACACAGAAGGATACCATGAGACCCTCTGTTTTATTTTAAATAGTTAATCTGTTGACATTTTATATTCTGACTTGTAACGTTAATGTTTAAAATAGGTCGAAAAAGACACCCCCTGTTTATTTAaattagctaggctactcacTATACCAATGGTAGGCTACAGATTTGAGTCACTGCGGTTAAAATTGTTTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037743.1 False 691 mRNA 0.38 2 71104306 71105731
TU203726 False 675 lncRNA 0.34 2 71104079 71105514
TU203722 False 451 lncRNA 0.39 2 71104329 71105514
TU203725 False 425 lncRNA 0.42 2 71104329 71105514
TU203724 False 368 lncRNA 0.41 2 71104412 71105514
TU203727 True 342 lncRNA 0.38 2 71104412 71105514

Neighbor

gene id symbol gene type direction distance location
ttc23 ttc23 coding downstream 158947 70926632 ~ 70945359 (-)
LOC118941475 NA coding downstream 328325 70773892 ~ 70775981 (-)
fam169b fam169b coding downstream 331024 70769140 ~ 70773282 (-)
arpin arpin coding downstream 336297 70765545 ~ 70768009 (-)
kmt5b LOC106560809 coding downstream 362671 70734177 ~ 70741635 (-)
LOC110495479 mctp2 coding upstream 28534 71134265 ~ 71164057 (-)
LOC110495486 LOC105023478 coding upstream 316278 71422009 ~ 71432121 (-)
LOC110495580 LOC106561145 coding upstream 906527 72012258 ~ 72050185 (-)
LOC100135856 LOC100135856 coding upstream 964750 72070481 ~ 72090783 (-)
LOC110495618 LOC106561149 coding upstream 1000275 72106006 ~ 72175447 (-)
G179373 NA non-coding downstream 3157 71100871 ~ 71101149 (-)
G179372 NA non-coding downstream 3551 71100519 ~ 71100755 (-)
G179311 mef2a non-coding downstream 10961 71079513 ~ 71093345 (-)
G179310 mef2a non-coding downstream 34102 70998045 ~ 71070204 (-)
G179320 NA non-coding downstream 96388 71006689 ~ 71007918 (-)
G179748 NA non-coding upstream 359458 71465189 ~ 71465424 (-)
G179751 NA non-coding upstream 363899 71469630 ~ 71469847 (-)
G179755 NA non-coding upstream 369393 71475124 ~ 71475405 (-)
G179757 NA non-coding upstream 370858 71476589 ~ 71476885 (-)
G179768 NA non-coding upstream 380095 71485826 ~ 71486035 (-)
G179215 NA other downstream 198052 70905372 ~ 70906254 (-)
LOC110501848 NA other downstream 543451 70552263 ~ 70642587 (-)
G179754 NA other upstream 368641 71474372 ~ 71474979 (-)
G180716 NA other upstream 1005237 72110968 ~ 72111663 (-)
c2cd4a LOC106561196 other upstream 1767013 72833292 ~ 72877678 (-)
G182494 NA other upstream 1921653 73011478 ~ 73066724 (-)

Expression


Co-expression Network