LOC110495479 (mctp2)


Basic Information

Item Value
gene id LOC110495479
gene name mctp2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 71134265 ~ 71164057 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037744.1
CCTAGAGCCTGCGGGTCAGTGGAAGGACGTGAGCAAGTGGAGCTTTCATTTCCTGTCAAAGAGGAGCAGCGAGGAGCTTTCAGAGGGATCAGTCGCAGCCTAATTGGGCCCCGGTGGGTGACACGGCAGCGTCGTAAATAAAGCAAACACAGTTTTAGTGTCTCTGCCACTGGACTCTTTAAACCTTCATCACAGAGCAAGCACTTCCAATGAAAGACCACATCTAATTACTTTGCTAGAGGTACATGCTTATGGAGGAAGACCAATCTGGGACTGTAGCACCACAATCTGGCCCGTCATTTGGATGTCGTTACTGAGTTGATTCCAGgtgtcgcttattttccccagtgtatttctccctgtgtttcctgtctctctgaccGGTGAGTGGGCCAGGAGAAACATGAAGAGCTGCTGTGACATGTGTAGTATAGACCAGAGCTGtatggagtacagtacagtataggagACACTCACCAGGTCCTGATTGCTGCTGATCCTCTCTGTGGTGATCTGGAAGTAGTTCCAGCCAATGAGCAGCAGCAGGAAGAGAGGCAGCATGAAGAGCTCCCAGGCCCACACCGTCACTATGAAGATCTGGAAGGACAGGAAGGAcagggtgggagagggggagactcATGAACAACACGGATACAGCACGGCGGGTGGCACTGCCCTCATACAACATGGGCCAGAACCCAAGCCCAGACATCACGGACACAATGTCCTCCTCCCACATCCCAGCATTCACCACTCAAAACAAACAATGGGTTTACCCACCACCCATGCCCCATGAACAACACAGCAGACTGCAAAGCTATGCCACGACACTATACAGCAGGGTACCCCAACTGGCGGCCTACGTTTTCTGAGcacaatgttttttttcattgttggacataaaagactgtaaaaacaccagaaaatcagCTTCAAGGTATTCCCACGCATAACAGAGAGatatgtgatcatatacaaatgtaagcaatgtTTGAAATATTATGTtctagtcaaatattatatctgttttggCTTCTTGtgatcaatttgcagtctacaaatgatttgtaattatgttctggtcCCCTGACCATCCGCACAAGAAAACAAATTGTCCTA
>TU203749
TGGTCTGCTTACATCCCCCACTGAGTGAGCTCTGAGCACAATGGGCCTCTGGAGTTAGCAGCCTGAGCTCTGGGCATTACAGAGATGTGAGGATGGCTGTATGTTCAAATTACTTCAACACGTTATAATGATAATGGATATAAGTGCTATTCCCTGTAATTGTCTTCTTACAACAATGTTTGGCAGAAGGGGAAGCTATCCATTCCAAAATACAGTATGTATTATTCAAATAATGGTGTATATTTGACTTACCCCATATCAAGATAATGTAGCGCAGTGGGATGTAGTATAATGTTGCTGTTGCCACAAAGAGAACCAAGCAGGCCAGGCAGGACAGGAAGGGCACAGACCAGTTGAATGTGTTCTTGACTCTTTCCCCGATGCATGCGATTTCATCCAAAATGTTTTGGACAGTGATGACGATCTCCTGGACCATATGGATTTTGTCCATCAGTCCCTTTTTCCCTGATTCcttctcatcttcctcctcatcaTCGGTCATGTTCATGTTCACCAGGTCCTGATTGCTGCTGATCCTCTCTGTGGTGATCTGGAAGTAGTTCCAGCCAATGAGCAGCAGCAGGAAGAGAGGCAGCATGAAGAGCTCCCAGGCCCACACCGTCACTATGAAGATCTGGAAGGACAGGAAGGAcagggtgggagagggggagactcATGAACAACACGGATACAGCACGGCGGGTGGCACTGCCCTCATACAACATGGGCCAGAACCCAAGCCCAGACATCACGGACACAATGTCCTCCTCCCACATCCCAGCATTCACCACTCAAAACAAACAATGGGTTTACCCACCACCCATGCCCCATGAACAACACAGCAGACTGCAAAGCTATGCCACGACACTATACAGCAGGGTACCCCA

Function

symbol description
mctp2 Enables calcium ion binding activity. Predicted to be involved in regulation of neurotransmitter secretion. Located in cytosol and nucleoplasm. Is integral component of membrane.

NR:

description
multiple C2 and transmembrane domain-containing protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037744.1 False 1119 mRNA 0.48 3 71134265 71164057
TU203749 True 887 TUCP 0.48 4 71134534 71142184

Neighbor

gene id symbol gene type direction distance location
LOC118941478 NA coding downstream 28534 71104079 ~ 71105731 (-)
ttc23 ttc23 coding downstream 188906 70926632 ~ 70945359 (-)
LOC118941475 NA coding downstream 358284 70773892 ~ 70775981 (-)
fam169b fam169b coding downstream 360983 70769140 ~ 70773282 (-)
arpin arpin coding downstream 366256 70765545 ~ 70768009 (-)
LOC110495486 LOC105023478 coding upstream 257952 71422009 ~ 71432121 (-)
LOC110495580 LOC106561145 coding upstream 848201 72012258 ~ 72050185 (-)
LOC100135856 LOC100135856 coding upstream 906424 72070481 ~ 72090783 (-)
LOC110495618 LOC106561149 coding upstream 941949 72106006 ~ 72175447 (-)
LOC118941485 NA coding upstream 1136275 72300332 ~ 72309971 (-)
G179373 NA non-coding downstream 33116 71100871 ~ 71101149 (-)
G179372 NA non-coding downstream 33510 71100519 ~ 71100755 (-)
G179311 mef2a non-coding downstream 40920 71079513 ~ 71093345 (-)
G179310 mef2a non-coding downstream 64061 70998045 ~ 71070204 (-)
G179748 NA non-coding upstream 301132 71465189 ~ 71465424 (-)
G179751 NA non-coding upstream 305573 71469630 ~ 71469847 (-)
G179755 NA non-coding upstream 311067 71475124 ~ 71475405 (-)
G179757 NA non-coding upstream 312532 71476589 ~ 71476885 (-)
G179768 NA non-coding upstream 321769 71485826 ~ 71486035 (-)
G179215 NA other downstream 228011 70905372 ~ 70906254 (-)
LOC110501848 NA other downstream 573410 70552263 ~ 70642587 (-)
G179754 NA other upstream 310315 71474372 ~ 71474979 (-)
G180716 NA other upstream 946911 72110968 ~ 72111663 (-)
c2cd4a LOC106561196 other upstream 1708687 72833292 ~ 72877678 (-)
G182494 NA other upstream 1863327 73011478 ~ 73066724 (-)
LOC110495704 nrg4 other upstream 1911970 73076020 ~ 73078379 (-)

Expression


Co-expression Network