LOC110495486 (LOC105023478)


Basic Information

Item Value
gene id LOC110495486
gene name LOC105023478
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 71422009 ~ 71432121 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570764.2
GTTCACTATATAGAGAGCTCAGTGAGCTGATCAGAGAGAAAGCATTCTGCTAGCCCAGCTCCTACAATTCGCAATCACTTCCTAACCTCACCCTTTTTAACATATTTGATCACTTTGATTCTCTGCTCTTTTTCAAACGATTTTTCCTGCATGAAGGAGGTTCTATAAGTTGTGatctttttgttttattatcaCTTGCTTGTCGGAGAGTTGACTTCATAGCATTGGCTTCAGCTGCGCGCTGCTGCTCGCACCACCTCACAAGAAAAGGGAGAAGCAGCAATATTTTTTTTACCAGTTGATGATTTTCTTCATGACTTGAGCTGGAACTTGATAGCGCTCTGCTGCTAGTGTGTAGCCTACATCAATTGTGTGTTTTATGCTGCTGTCACGTCGCCTATACGTTCAACTTACTGCTTCGTTTCTTGAATAGGCTACCTCATTTCATTATTGCAATCATTTgctcttttttttctccatttcgaGTCTCCTGAATGGCTGACTGCAAGCGCCCCTGGACTTGGCCTCTAAGCGCAATGCTGCGAATCAGCTCGCCATCACATCAGTTTTAAAACGTGTGCTTAGCATCGTCTATAACAGCAATACAATTTGACATTTTCGCCAGATTCAACGGACAATCGACATCAGTAAGCTTTtgtcatttatttatttgactatTAATTTTGATTACAGCGTGCTGCATTCTTTTGAGAGAACAAGCACGGCGAAACCAAAAACGGCAGACAAAAAGTTTCCTTACGTTGACTGATAGATATGGCAATGGTAGTGTGGAGAGGCTCCCAGGACGATGTGGCTGAGACCCAAGGTACCCTTTCTTCGCAATCTCAAGGAGGACTATCCCTTCCGACCCCTCAGTTGAATCTGTCAGGCTCTCAGGTCGCCCCTCCGACCCCTCAGACACCAGTCCAAGGACCCCCGAACAACACTGTACAGTCTACGCCGACAAACCAGACGACGCAGTCGGAGAAACAGCAGCCACAGCACATAGAATGCGTGGTTTGCGGGGATAAATCTAGTGGTAAACACTATGGCCAGTTTACTTGCGAGGGGTGCAAAAGCTTCTTCAAACGGAGCGTACGAAGGAACCTCAGTTACACATGCCGTGCCAACAGGAATTGTCCCATTGACCAGCACCATCGCAATCAGTGTCAGTACTGCCGCCTCAAAAAATGCCTGAAAGTTGGCATGAGACGGGAAGTTTCTCTTTTTACTGCAGCGGTGCAACGGGGACGGATGCCACCCACACAGCCACACCATGGCCAGTTCGCCTTGACAAATGGGGACCCACTCCACTGCCATTCCTACTTATCCGGATATATCTCTCTACTGCTGAGAGCGGAGCCCTACCCAACGTCCCGGTATGGCAGTCAATGCATGCAACCCAACAACATCATGGGCATCGAGAACATATGTGAACTGGCGGCCAGGATGCTGTTCAGCGCCGTGGAGTGGGCCAGGAATATCCCCTTCTTTCCAGACCTTCAGATTACTGACCAGGTGGCTCTTCTGCGGTTGACCTGGAGTGAGTTATTTGTGCTCAACGCCGCACAGTGCTCCATGCCTCTCCATGTGGCTCCACTTCTGGCGGCGGCTGGCCTACATGCCTCCCCCATGTCTGCGGACAGAGTGGTCGCATTTATGGACCACATTAGGATCTTCCAAGAACAAGTGGAAAAGCTGAAAGCTTTGCACGTTGACTCTGCTGAATACAGCTGCTTAAAGGCAATTGTGCTCTTCACATCAGATGCTTGTGGCCTCTCAGATGTGGCCCATGTGGAAAGTTTGCAAGAGAAGTCACAGTGCGCCCTGGAGGAATATGTTCGGAGCCAGTATCCCAACCAGCCTACACGATTTGGGAAGTTGTTACTTCGCTTGCCTTCGCTGCGCACAGTCTCTTCATCGGTCATAGAGCAATTGTTTTTCGTCCGATTGGTAGGTAAAACCCCAATTGAAACCCTCATCAGGGATATGTTGCTTTCGGGGAGCAGTTTTAACTGGCCCTACATGTCAATTCAGTAAGCAGAAGGAATGAACAAAGGGGGTAAGACTACAATGGTTAGCGCTTCTTTTGTTGAAGGAAAACGGCTGTTACAAGAGCTTGCTTTCACAAAGAAAGacattgttgtaaatgactgtgaATTTTAAAATTGAGACATTCTGCgaactttcaaaatgcagataAAAGCTCCCAGTGTCATTCGGAACAACTTGCTTCTTATCCATTTTTAAGAAAAAAGAAAACGAAAAAAAATAAGGAAAAGGATTTTGGTAATCCTCAAAAGGAAAATGGAAACTATAAAGTGCATTTAAAATGAACATTTGGAAAAACTTAGGAGAAAATAAAAAAGTACGTTTTCTTTTTCCAAATTACTTGTCCTGTGTCCATGTATCTAGCTGTTTTTTGTACTTTTCTTTTGTTCCTCCTTTCTGGTTCCAAACCGGCCTATGTGATTCTGTAGTACAAGTGGTGTTCTTTTCTAAAACCATGACTTCTTTTGAAACAGTTAAGTAATGTAAAATGTTCTTCAAGAATTAAAACTAAATCCACAGCAATATAGGAAAATGCTTATAACTACATGCTTAATGCTGCATACGCACTTACTCTTAAAATGACACACAATAAACTGGACAAGGGTGTTTTTTCGGAGTTCAGGTTCAACTTTCTGACCCAGCTAAATCATTGCTCTTTCCAATTGAGTATAGACTTTATGTTCCAGGGTTGCCCTGTTTTGTCACTGCTTAGTTGAGCCAGTCGAACCACATCTGCTCTTAACGTTTCATAGAAGATTCAAGGCAAAACAGCTATTGCTGAACAGTGTGTGATATCGGTTACCAGTATGTAGGCTATGCTTTATGAACCCATTTCAACTTTGTGCATCCCCACATGCACCCAGCTCGAAATGTTTTGCATCAATTTAAAGacagttaaaaaaaatgtatgaagcCTCGCTATTGAAGGGTGATTGTGGCTTGTAAATGTAGATGCAAatgaattattattttaatttaggCAGGTAATGCATATAACATTGTGTCTTGCAATGTAGGCCTAAACATCAATGAAAACATCTAGCCATACAATACCTTATTTTGAAATTGGAAAGGTCAAGGGTCATATACCTTTAAGTACAGCTGGAATAGTGTTTAATAGCAGTATTATTATGACATCCCTGAAATGTCACCCTCTATACACTGCAAGCATTAAGTGCCTGAAAAGCGCGAAGTAATTTCTAATCAAAACGTTGTTTCAGTATACAACTTTGGGAACACTATTAGATTTGAAACTTCAGTCTTATGCTTGTGTATTTCACTTGAAAAACGTTAATTAGAGGCAGTATTGTTGTAAATATAGGTCAATTCATTTCAATGAATTTTCCTTTATACAAAGTATGTGATTAAGAAAAACTGTGTTTGCTATTTTTTCGGTAATACAACGTCTTCAATTCAGTGGCAGACTTAGCTAGTATCACTGAAAGTTATGTTTGTAATGTATATACATATTAAGACAAAAATGTTTTCTTTTTCATGTATTTAGACTGTGAATGCATGGCCACAGGTCGCTAACCTATTTTACCTTTGATATatataaatgtaaatgtttttgacTGTATAGATATAATCTGTGCATTCAGTACACTAGCCCTTGTATTTAAAAAAGAAACAAAATGTTCAACAATAGGCTAAGACTAAACAGGGTGAGCTGGTCTGGAAAGCTATTTTGACTTAGTGTTCTGCTCCTTTGGTCTGTGACAAATgccttgtgtgcgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagcgagaataggtgagtgagagagagagagtgtgtgtaagagtgtgtgtgaaaAAAATGTGTCCTTGTTTTTGGGGCTTTTCTTCAACACACGAGACACCATGTTGTGGTTGGATAAAAAGGGATCATATTGTGTAGGTGATTGAACAGTGCTCTTCGGCTGTTTCCATGCCACATATGGACCAGAGAATGATACATGATTGTAATTATGAACAGTTTAAACTGACCCacgtttttatataaatatataaaaatatatgacTGCAGGGTATTGATAACGTATAGATACTTTTTTTTAATGATtatgattattatgattattaatTGCAAGtgatatatgtgagtgtgtgtggaagTTTATAGTTGAACAcaattcttgtttgtttgtgttagcTTATTGTAAACAAGCATTCTGCTGTAAATTTGTTCTTGGTATTAAATTATAATTTATGAATTTGAAAAAAATA
>XM_021570772.2
ACTATATAGAGAGCTCAGTGAGCTGATCAGAGAGAAAGCATTCTGCTAGCCCAGCTCCTACAATTCGCAATCACTTCCTAACCTCACCCTTTTTAACATATTTGATCACTTTGATTCTCTGCTCTTTTTCAAACGATTTTTCCTGCATGAAGGAGGTTCTATAAGTTGTGatctttttgttttattatcaCTTGCTTGTCGGAGAGTTGACTTCATAGCATTGGCTTCAGCTGCGCGCTGCTGCTCGCACCACCTCACAAGAAAAGGGAGAAGCAGCAATATTTTTTTTACCAGTTGATGATTTTCTTCATGACTTGAGCTGGAACTTGATAGCGCTCTGCTGCTAGTGTGTAGCCTACATCAATTGTGTGTTTTATGCTGCTGTCACGTCGCCTATACGTTCAACTTACTGCTTCGTTTCTTGAATAGGCTACCTCATTTCATTATTGCAATCATTTgctcttttttttctccatttcgaGTCTCCTGAATGGCTGACTGCAAGCGCCCCTGGACTTGGCCTCTAAGCGCAATGCTGCGAATCAGCTCGCCATCACATCAGTTTTAAAACGTGTGCTTAGCATCGTCTATAACAGCAATACAATTTGACATTTTCGCCAGATTCAACGGACAATCGACATCAGTAAGCTTTtgtcatttatttatttgactatTAATTTTGATTACAGCGTGCTGCATTCTTTTGAGAGAACAAGCACGGCGAAACCAAAAACGGCAGACAAAAAGTTTCCTTACGTTGACTGATAGATATGGCAATGGTAGTGTGGAGAGGCTCCCAGGACGATGTGGCTGAGACCCAAGGTACCCTTTCTTCGCAATCTCAAGGAGGACTATCCCTTCCGACCCCTCAGTTGAATCTGTCAGGCTCTCAGGTCGCCCCTCCGACCCCTCAGACACCAGTCCAAGGACCCCCGAACAACACTGTACAGTCTACGCCGACAAACCAGACGACGCAGTCGGAGAAACAGCAGCCACAGCACATAGAATGCGTGGTTTGCGGGGATAAATCTAGTGGTAAACACTATGGCCAGTTTACTTGCGAGGGGTGCAAAAGCTTCTTCAAACGGAGCGTACGAAGGAACCTCAGTTACACATGCCGTGCCAACAGGAATTGTCCCATTGACCAGCACCATCGCAATCAGTGTCAGTACTGCCGCCTCAAAAAATGCCTGAAAGTTGGCATGAGACGGGAAGCGGTGCAACGGGGACGGATGCCACCCACACAGCCACACCATGGCCAGTTCGCCTTGACAAATGGGGACCCACTCCACTGCCATTCCTACTTATCCGGATATATCTCTCTACTGCTGAGAGCGGAGCCCTACCCAACGTCCCGGTATGGCAGTCAATGCATGCAACCCAACAACATCATGGGCATCGAGAACATATGTGAACTGGCGGCCAGGATGCTGTTCAGCGCCGTGGAGTGGGCCAGGAATATCCCCTTCTTTCCAGACCTTCAGATTACTGACCAGGTGGCTCTTCTGCGGTTGACCTGGAGTGAGTTATTTGTGCTCAACGCCGCACAGTGCTCCATGCCTCTCCATGTGGCTCCACTTCTGGCGGCGGCTGGCCTACATGCCTCCCCCATGTCTGCGGACAGAGTGGTCGCATTTATGGACCACATTAGGATCTTCCAAGAACAAGTGGAAAAGCTGAAAGCTTTGCACGTTGACTCTGCTGAATACAGCTGCTTAAAGGCAATTGTGCTCTTCACATCAGATGCTTGTGGCCTCTCAGATGTGGCCCATGTGGAAAGTTTGCAAGAGAAGTCACAGTGCGCCCTGGAGGAATATGTTCGGAGCCAGTATCCCAACCAGCCTACACGATTTGGGAAGTTGTTACTTCGCTTGCCTTCGCTGCGCACAGTCTCTTCATCGGTCATAGAGCAATTGTTTTTCGTCCGATTGGTAGGTAAAACCCCAATTGAAACCCTCATCAGGGATATGTTGCTTTCGGGGAGCAGTTTTAACTGGCCCTACATGTCAATTCAGTAAGCAGAAGGAATGAACAAAGGGGGTAAGACTACAATGGTTAGCGCTTCTTTTGTTGAAGGAAAACGGCTGTTACAAGAGCTTGCTTTCACAAAGAAAGacattgttgtaaatgactgtgaATTTTAAAATTGAGACATTCTGCgaactttcaaaatgcagataAAAGCTCCCAGTGTCATTCGGAACAACTTGCTTCTTATCCATTTTTAAGAAAAAAGAAAAC
>XM_021570783.2
CCTAGCCTACAGTAGGACAGAAAGGAAAGACGCACAGGAGCATTTTCTTACTGTTTTACTTTTGTCATTTTTAAAGACAGCCATAACAACCGCTACTTATGTTATGAAGACAAGACAATTTACATTACAAGGTTGAAGTTCAGCACATAAGTTTAAAAATGTAGTGACTGTGATTAATCCTTTGTCAGTCTTACGTTTTTTGCTTATTGTTCTTCAAATAAACTCAAGTATTTTTGTGATTCATTCCATCTGGTGGAAAGTACACCTTCCCGTCTATTCTCGACATTATATCGAAAAGAAAGAGAAGACTAGTATATTCTGATAAGACAGAAGATGCATCATGCTGCGGACGAATCGACCTATGCATTTGCGGTGCAACGGGGACGGATGCCACCCACACAGCCACACCATGGCCAGTTCGCCTTGACAAATGGGGACCCACTCCACTGCCATTCCTACTTATCCGGATATATCTCTCTACTGCTGAGAGCGGAGCCCTACCCAACGTCCCGGTATGGCAGTCAATGCATGCAACCCAACAACATCATGGGCATCGAGAACATATGTGAACTGGCGGCCAGGATGCTGTTCAGCGCCGTGGAGTGGGCCAGGAATATCCCCTTCTTTCCAGACCTTCAGATTACTGACCAGGTGGCTCTTCTGCGGTTGACCTGGAGTGAGTTATTTGTGCTCAACGCCGCACAGTGCTCCATGCCTCTCCATGTGGCTCCACTTCTGGCGGCGGCTGGCCTACATGCCTCCCCCATGTCTGCGGACAGAGTGGTCGCATTTATGGACCACATTAGGATCTTCCAAGAACAAGTGGAAAAGCTGAAAGCTTTGCACGTTGACTCTGCTGAATACAGCTGCTTAAAGGCAATTGTGCTCTTCACATCAGATGCTTGTGGCCTCTCAGATGTGGCCCATGTGGAAAGTTTGCAAGAGAAGTCACAGTGCGCCCTGGAGGAATATGTTCGGAGCCAGTATCCCAACCAGCCTACACGATTTGGGAAGTTGTTACTTCGCTTGCCTTCGCTGCGCACAGTCTCTTCATCGGTCATAGAGCAATTGTTTTTCGTCCGATTGGTAGGTAAAACCCCAATTGAAACCCTCATCAGGGATATGTTGCTTTCGGGGAGCAGTTTTAACTGGCCCTACATGTCAATTCAGTAAGCAGAAGGAATGAACAAAGGGGGTAAGACTACAATGGTTAGCGCTTCTTTTGTTGAAGGAAAACGGCTGTTACAAGAGCTTGCTTTCACAAAGAAAGacattgttgtaaatgactgtgaATTTTAAAATTGAGACATTCTGCgaactttcaaaatgcagataAAAGCTCCCAGTGTCATTCGGAACAACTTGCTTCTTATCCATTTTTAAGAAAAAAGAAAAC

Function

NR:

description
PREDICTED: COUP transcription factor 2 isoform X3

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0060838 lymphatic endothelial cell fate commitment biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570764.2 False 4414 mRNA 0.41 3 71422009 71429327
XM_021570772.2 False 2241 mRNA 0.47 3 71424160 71429323
XM_021570783.2 True 1396 mRNA 0.45 3 71424160 71432121

Neighbor

gene id symbol gene type direction distance location
LOC110495479 mctp2 coding downstream 257952 71134265 ~ 71164057 (-)
LOC118941478 NA coding downstream 316278 71104079 ~ 71105731 (-)
ttc23 ttc23 coding downstream 476650 70926632 ~ 70945359 (-)
LOC118941475 NA coding downstream 646028 70773892 ~ 70775981 (-)
fam169b fam169b coding downstream 648727 70769140 ~ 70773282 (-)
LOC110495580 LOC106561145 coding upstream 580137 72012258 ~ 72050185 (-)
LOC100135856 LOC100135856 coding upstream 638360 72070481 ~ 72090783 (-)
LOC110495618 LOC106561149 coding upstream 673885 72106006 ~ 72175447 (-)
LOC118941485 NA coding upstream 868211 72300332 ~ 72309971 (-)
roraa LOC106561150 coding upstream 1024745 72456866 ~ 72744512 (-)
G179373 NA non-coding downstream 320860 71100871 ~ 71101149 (-)
G179372 NA non-coding downstream 321254 71100519 ~ 71100755 (-)
G179311 mef2a non-coding downstream 328664 71079513 ~ 71093345 (-)
G179320 NA non-coding downstream 414091 71006689 ~ 71007918 (-)
G179748 NA non-coding upstream 33068 71465189 ~ 71465424 (-)
G179751 NA non-coding upstream 37509 71469630 ~ 71469847 (-)
G179755 NA non-coding upstream 43003 71475124 ~ 71475405 (-)
G179757 NA non-coding upstream 44468 71476589 ~ 71476885 (-)
G179768 NA non-coding upstream 53705 71485826 ~ 71486035 (-)
G179310 mef2a other downstream 351805 70998045 ~ 71070204 (-)
G179215 NA other downstream 515755 70905372 ~ 70906254 (-)
G179754 NA other upstream 42251 71474372 ~ 71474979 (-)
G180716 NA other upstream 678847 72110968 ~ 72111663 (-)
c2cd4a LOC106561196 other upstream 1440623 72833292 ~ 72877678 (-)
G182494 NA other upstream 1595263 73011478 ~ 73066724 (-)
LOC110495704 nrg4 other upstream 1643906 73076020 ~ 73078379 (-)

Expression


Co-expression Network