LOC110495511 (arrdc4)


Basic Information

Item Value
gene id LOC110495511
gene name arrdc4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 71705084 ~ 71713730 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570808.2
ACTCAACTGTTCACGCGCACTGGCTTGTCCCCCATTGGACCAATGTAATGTATCATGCGTGATGGTAAATATCGCACTTTCTTGGCTGTGTAGAGTCCGTCATCACAGTGAAAATTCTGTCCAATGGTAGAGCCTACACGTTCCAAAGTCAAACCCAATTATTGCGTATActtgggtgtaatcattagtccaaaacgGGAGTTTCTATTGGAGAAATTCAGAcaggtccctccccgtttcgttctgtttgcttccgtttaagaatgtttttcaacagaatccgCGTAATGAATATGCCCCTGAGCTCTCTGGGTGTAGCTAAATCATTCGCTCTGCAACCCCGCTTTCTCTGGACAGCGTGGGAAATTGGCCCAATTACTGTAATGTAAAACAATGATCATGTCAATTGTGTTTGACCTATTCTATTGAAGGTTTCTCATGAAATGTGTTACTAGCTGGTCAATTGCCAAATTCGAGTTTGACGTTCCCATATCGAATCCCAGGACAACAGTAACGTCCAACGATGGCTGACAAAGTGAAGGTATTCTGTATCATGTTCAACAATGAAGACAAGCGTGAATACAGTCCTGGTGAAGTTCTCTCTGGACACGTTGTGGTCGAGGTGTCGACGGGTGTGTCGGTACAAATCAAAGCTGTCAAAATATCGACCAGAGGATGTGCCCAGGTCTGTTGGGGTGAAGGGGCTCGAAAAGCATCATCACCGAGCAGTGCTGTTATTGCAAACACATCATCTCAGTGTGAGCAGGTGGAATACTTCTGCATATCTCAAACTCTCAAAGAAACATCAGATGGTGAGGAATTCACCAGTCTTGATGAAGGGCATTATGAGTTCCCCTTTCATGTGGAGCTCACTCAAACGCCCCTTGTTACCTCTTTCAAGGGGAAGTATGGGAGTGTTTGCTATGAGGTGACAGCTGTATTACAGAGGCCCTTGAATCAAGATCAAACTGTCAACAGAGAATTCTCTGTTATCAGCCATGTTGATGTCAATTCCCCATGGTTACTGTCCTCTGTGTCTACAAACAACAAGAAGATGATTGGCTGTTGGATTTTTACCTCAGGCCCCATCTCTCTGAATGTCAATATCAACAGAAGGGGCTACTGTAACGGAGAGTCAATCCCCATCTATGCTGTGATTGAGAACTTTTCTTCTCGACTCATCGTGCCTAAAGCAGCTATCTACCAAATACAGACCTTCATGGCAAATGGCAAAACAAAAAGTCATACAAAGTTGGTTGCCAGTGTGAGGGGTAACCACATTCCATCAGGCTGCACAGACACCTGGAATGGAAAAACACTGAAGATCCCACTTGTCTCTGCCTCAATTCTCAACTCTTCAGTCATCAGAGTGGAATACTCCCTGGTAGTCATGGCACAAATACCAGGTGCTAAGAAACTCAAGGTGGAGCTTCCCATTGTGATTGGCAGTATACCATACAATGGCCTTGACAGCAGGAGCTCCAGCTTGAGCAGTCACTTCAGCATGGACATGAGCTGGCTCGCACTGGCGCTTCCTGAAGTGCCTGAAGCCCCCCCTAACTATGCAGATGTGGTGTCTGAGGAAGAGTTTGAACTGCACAGCCCCTCTTACTCTCAGTCCGAGGAGTTAGAGAGACAGCTTGGTGGACCAGCCTTTGTTTACATCCAGGAGTTCAGGTTCCAGCCTCCACCACTGTACTCTGAGGTGAGTTCTCACATTTGGTGTCTCACATTGTTAAGTAAACATTTGACTTATTCTGAGTAGTGCTTCAGGCTAAATGTTACTTTTCTGCTTTCTAACAACGGTCTTCATTCATAACAGGTTAATTCTCACCCAGTCCATAGTTAGGCTAAATGTTGAGCCTCTACATCATCTGTTAAAGAACCAAAGTGATGCCTTCAAATTGCAATGTTGCACAATATTTATATTGTGGTGGAAAGAGTGTAATATAGAGTGATCAAGTCATGAACTAATTAAACTTTGGATTTAAAGCAGATTAACAGTATTTTTTTTGAATGATTATATACTAGGCTGTGTTGAGAAATGGAGCCTACTCTTTACATGACTGTTATTAGAAATGGAATTACTGTACAGCACATTGTTGTAGCAGGCAACATAATATAAGATGTGTTATcttactgtatataatgtaaaGCAATTTAaaagctactgaaacagattttGTTGTTGAAATCTACAATAGATTTATTCCCGTATGTCGTGAATCCTTTCCTGTTCAGGGTGTATAATATAACATGAGCGTTCTTTTTGATACATTGTAACTAAAACGTTGAAAATGTCTGAGCAGAAAGAGTAATATGCTTTGATAGTTCAAAAGTTACGCAAAGGTATTTATTCCAGGTGGATATTTTGACCTTGGAGTTGTTCCTTCTCAGAATATGTTGCCTTATCTGAAATGTAACTGATGGTGAGTTTACATTGTTGGTTTTGAATTGTGAGTGCCTAGGGAAAACCTTGGATCATGCAGTGTTGTGAATGTTTATCAGGTACAGACGTATGTATATATGTTAGTTATCATGTTGCTATTTACCAGTTTATCTATTGAAATGTATACTTTTGCAGGATGAATACAAAGACATATTACcatactactgtatgtgttagaTTGTATCAGAATGGCATGTTGCTATTCCATACATCAGTCAATCTGAACCCAGTGGGTTTCTGTTAAACTTAAATTTTTGTAATTTTACAAAAAGTTTGAATAAAATAATTTGAAAATG
>XM_021570824.2
CAACTGTTCACGCGCACTGGCTTGTCCCCCATTGGACCAATGTAATGTATCATGCGTGATGGTAAATATCGCACTTTCTTGGCTGTGTAGAGTCCGTCATCACAGTGAAAATTCTGTCCAATGGTAGAGCCTACACGTTCCAAAGTCAAACCCAATTATTGCGTATActtgggtgtaatcattagtccaaaacgGGAGTTTCTATTGGAGAAATTCAGAcaggtccctccccgtttcgttctgtttgcttccgtttaagaatgtttttcaacagaatccgCGTAATGAATATGCCCCTGAGCTCTCTGGGTGTAGCTAAATCATTCGCTCTGCAACCCCGCTTTCTCTGGACAGCGTGGGAAATTGGCCCAATTACTGTAATGTAAAACAATGATCATGTCAATTGTGTTTGACCTATTCTATTGAAGGTTTCTCATGAAATGTGTTACTAGCTGGTCAATTGCCAAATTCGAGTTTGACGTTCCCATATCGAATCCCAGGACAACAGTAACGTCCAACGATGGCTGACAAAGTGAAGGTATTCTGTATCATGTTCAACAATGAAGACAAGCGTGAATACAGTCCTGGTGAAGTTCTCTCTGGACACGTTGTGGTCGAGGTGTCGACGGGTGTGTCGGTACAAATCAAAGCTGTCAAAATATCGACCAGAGGATGTGCCCAGGTCTGTTGGGGTGAAGGGGCTCGAAAAGCATCATCACCGAGCAGTGCTGTTATTGCAAACACATCATCTCAGTGTGAGCAGGTGGAATACTTCTGCATATCTCAAACTCTCAAAGAAACATCAGATGGTGAGGAATTCACCAGTCTTGATGAAGGGCATTATGAGTTCCCCTTTCATGTGGAGCTCACTCAAACGCCCCTTGTTACCTCTTTCAAGGGGAAGTATGGGAGTGTTTGCTATGAGGTGACAGCTGTATTACAGAGGCCCTTGAATCAAGATCAAACTGTCAACAGAGAATTCTCTGTTATCAGCCATGTTGATGTCAATTCCCCATGGTTACTGTCCTCTGTGTCTACAAACAACAAGAAGATGATTGGCTGTTGGATTTTTACCTCAGGCCCCATCTCTCTGAATGTCAATATCAACAGAAGGGGCTACTGTAACGGAGAGTCAATCCCCATCTATGCTGTGATTGAGAACTTTTCTTCTCGACTCATCGTGCCTAAAGCAGCTATCTACCAAATACAGACCTTCATGGCAAATGGCAAAACAAAAAGTCATACAAAGTTGGTTGCCAGTGTGAGGGGTAACCACATTCCATCAGGCTGCACAGACACCTGGAATGGAAAAACACTGAAGATCCCACTTGTCTCTGCCTCAATTCTCAACTCTTCAGTCATCAGAGTGGAATACTCCCTGGTAGTCATGGCACAAATACCAGGTGCTAAGAAACTCAAGGTGGAGCTTCCCATTGTGATTGGCAGTATACCATACAATGGCCTTGACAGCAGGAGCTCCAGCTTGAGCAGTCACTTCAGCATGGACATGAGCTGGCTCGCACTGGCGCTTCCTGAAGTGCCTGAAGCCCCCCCTAACTATGCAGATGTGGTGTCTGAGGAAGAGTTTGAACTGCACAGCCCCTCTTACTCTCAGTCCGAGGAGTTAGAGAGACAGCTTGGTGGACCAGCCTTTGTTTACATCCAGGAGTTCAGGTTCCAGCCTCCACCACTGTACTCTGAGGTTAATTCTCACCCAGTCCATAGTTAGGCTAAATGTTGAGCCTCTACATCATCTGTTAAAGAACCAAAGTGATGCCTTCAAATTGCAATGTTGCACAATATTTATATTGTGGTGGAAAGAGTGTAATATAGAGTGATCAAGTCATGAACTAATTAAACTTTGGATTTAAAGCAGATTAACAGTATTTTTTTTGAATGATTATATACTAGGCTGTGTTGAGAAATGGAGCCTACTCTTTACATGACTGTTATTAGAAATGGAATTACTGTACAGCACATTGTTGTAGCAGGCAACATAATATAAGATGTGTTATcttactgtatataatgtaaaGCAATTTAaaagctactgaaacagattttGTTGTTGAAATCTACAATAGATTTATTCCCGTATGTCGTGAATCCTTTCCTGTTCAGGGTGTATAATATAACATGAGCGTTCTTTTTGATACATTGTAACTAAAACGTTGAAAATGTCTGAGCAGAAAGAGTAATATGCTTTGATAGTTCAAAAGTTACGCAAAGGTATTTATTCCAGGTGGATATTTTGACCTTGGAGTTGTTCCTTCTCAGAATATGTTGCCTTATCTGAAATGTAACTGATGGTGAGTTTACATTGTTGGTTTTGAATTGTGAGTGCCTAGGGAAAACCTTGGATCATGCAGTGTTGTGAATGTTTATCAGGTACAGACGTATGTATATATGTTAGTTATCATGTTGCTATTTACCAGTTTATCTATTGAAATGTATACTTTTGCAGGATGAATACAAAGACATATTACcatactactgtatgtgttagaTTGTATCAGAATGGCATGTTGCTATTCCATACATCAGTCAATCTGAACCCAGTGGGTTTCTGTTAAACTTAAATTTTTGTAATTTTACAAAAAGTTTGAATAAAATAATTTGAAAATG
>XM_021570816.2
TTTCTAGTCTAGTCGATAGGCAATCTATTCTAGTGAGAAAGTTAGAGCTTCTGATCATCATCATTATAGACTTATGtataaaaccacctgtctcctttTACATAAGTAACGTCCAACGATGGCTGACAAAGTGAAGGTATTCTGTATCATGTTCAACAATGAAGACAAGCGTGAATACAGTCCTGGTGAAGTTCTCTCTGGACACGTTGTGGTCGAGGTGTCGACGGGTGTGTCGGTACAAATCAAAGCTGTCAAAATATCGACCAGAGGATGTGCCCAGGTCTGTTGGGGTGAAGGGGCTCGAAAAGCATCATCACCGAGCAGTGCTGTTATTGCAAACACATCATCTCAGTGTGAGCAGGTGGAATACTTCTGCATATCTCAAACTCTCAAAGAAACATCAGATGGTGAGGAATTCACCAGTCTTGATGAAGGGCATTATGAGTTCCCCTTTCATGTGGAGCTCACTCAAACGCCCCTTGTTACCTCTTTCAAGGGGAAGTATGGGAGTGTTTGCTATGAGGTGACAGCTGTATTACAGAGGCCCTTGAATCAAGATCAAACTGTCAACAGAGAATTCTCTGTTATCAGCCATGTTGATGTCAATTCCCCATGGTTACTGTCCTCTGTGTCTACAAACAACAAGAAGATGATTGGCTGTTGGATTTTTACCTCAGGCCCCATCTCTCTGAATGTCAATATCAACAGAAGGGGCTACTGTAACGGAGAGTCAATCCCCATCTATGCTGTGATTGAGAACTTTTCTTCTCGACTCATCGTGCCTAAAGCAGCTATCTACCAAATACAGACCTTCATGGCAAATGGCAAAACAAAAAGTCATACAAAGTTGGTTGCCAGTGTGAGGGGTAACCACATTCCATCAGGCTGCACAGACACCTGGAATGGAAAAACACTGAAGATCCCACTTGTCTCTGCCTCAATTCTCAACTCTTCAGTCATCAGAGTGGAATACTCCCTGGTAGTCATGGCACAAATACCAGGTGCTAAGAAACTCAAGGTGGAGCTTCCCATTGTGATTGGCAGTATACCATACAATGGCCTTGACAGCAGGAGCTCCAGCTTGAGCAGTCACTTCAGCATGGACATGAGCTGGCTCGCACTGGCGCTTCCTGAAGTGCCTGAAGCCCCCCCTAACTATGCAGATGTGGTGTCTGAGGAAGAGTTTGAACTGCACAGCCCCTCTTACTCTCAGTCCGAGGAGTTAGAGAGACAGCTTGGTGGACCAGCCTTTGTTTACATCCAGGAGTTCAGGTTCCAGCCTCCACCACTGTACTCTGAGGTGAGTTCTCACATTTGGTGTCTCACATTGTTAAGTAAACATTTGACTTATTCTGAGTAGTGCTTCAGGCTAAATGTTACTTTTCTGCTTTCTAACAACGGTCTTCATTCATAACAGGTTAATTCTCACCCAGTCCATAGTTAGGCTAAATGTTGAGCCTCTACATCATCTGTTAAAGAACCAAAGTGATGCCTTCAAATTGCAATGTTGCACAATATTTATATTGTGGTGGAAAGAGTGTAATATAGAGTGATCAAGTCATGAACTAATTAAACTTTGGATTTAAAGCAGATTAACAGTATTTTTTTTGAATGATTATATACTAGGCTGTGTTGAGAAATGGAGCCTACTCTTTACATGACTGTTATTAGAAATGGAATTACTGTACAGCACATTGTTGTAGCAGGCAACATAATATAAGATGTGTTATcttactgtatataatgtaaaGCAATTTAaaagctactgaaacagattttGTTGTTGAAATCTACAATAGATTTATTCCCGTATGTCGTGAATCCTTTCCTGTTCAGGGTGTATAATATAACATGAGCGTTCTTTTTGATACATTGTAACTAAAACGTTGAAAATGTCTGAGCAGAAAGAGTAATATGCTTTGATAGTTCAAAAGTTACGCAAAGGTATTTATTCCAGGTGGATATTTTGACCTTGGAGTTGTTCCTTCTCAGAATATGTTGCCTTATCTGAAATGTAACTGATGGTGAGTTTACATTGTTGGTTTTGAATTGTGAGTGCCTAGGGAAAACCTTGGATCATGCAGTGTTGTGAATGTTTATCAGGTACAGACGTATGTATATATGTTAGTTATCATGTTGCTATTTACCAGTTTATCTATTGAAATGTATACTTTTGCAGGATGAATACAAAGACATATTACcatactactgtatgtgttagaTTGTATCAGAATGGCATGTTGCTATTCCATACATCAGTCAATCTGAACCCAGTGGGTTTCTGTTAAACTTAAATTTTTGTAATTTTACAAAAAGTTTGAATAAAATAATTTGAAAATG

Function

symbol description
arrdc4 Predicted to enable ubiquitin ligase-substrate adaptor activity. Acts upstream of or within positive regulation of ubiquitin-protein transferase activity. Located in endosome and plasma membrane.

NR:

description
arrestin domain-containing protein 4 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570808.2 False 2745 mRNA 0.41 8 71705084 71713730
XM_021570824.2 False 2625 mRNA 0.41 9 71705087 71713730
XM_021570816.2 True 2340 mRNA 0.40 7 71705615 71713730

Neighbor

gene id symbol gene type direction distance location
LOC110495497 NA coding upstream 262321 71432338 ~ 71442763 (+)
LOC110495472 NA coding upstream 442259 71255348 ~ 71262825 (+)
LOC110495464 mctp2 coding upstream 555110 71108902 ~ 71149974 (+)
LOC110495445 mef2a coding upstream 614966 70994926 ~ 71090118 (+)
synm synm coding upstream 778449 70911497 ~ 70926635 (+)
LOC110495533 lysmd4 coding downstream 52521 71766251 ~ 71772246 (+)
LOC118941481 NA coding downstream 230955 71944685 ~ 71960099 (+)
LOC118937292 NA coding downstream 247989 71961719 ~ 71982821 (+)
LOC110495562 LOC106561144 coding downstream 281964 71995694 ~ 72008263 (+)
LOC110495604 LOC106573778 coding downstream 346126 72059717 ~ 72065199 (+)
G179651 NA non-coding upstream 230172 71474644 ~ 71474912 (+)
G179649 NA non-coding upstream 233551 71471331 ~ 71471533 (+)
G179647 NA non-coding upstream 235153 71469696 ~ 71469931 (+)
G179564 LOC105023478 non-coding upstream 280439 71353606 ~ 71424645 (+)
G179530 NA non-coding upstream 388245 71316442 ~ 71316839 (+)
G180438 NA non-coding downstream 247252 71960982 ~ 71961201 (+)
G180449 NA non-coding downstream 264898 71978628 ~ 71978830 (+)
G180454 NA non-coding downstream 273041 71986771 ~ 71986991 (+)
G180456 NA non-coding downstream 274579 71988309 ~ 71988640 (+)
igf1ra igf1r other upstream 897180 70794530 ~ 70905277 (+)
G177812 NA other upstream 1591644 70107286 ~ 70113440 (+)
G177067 NA other upstream 2247651 69456558 ~ 69457433 (+)
G176725 lonp2 other upstream 2747198 68956263 ~ 68957886 (+)
G176612 LOC100846954 other upstream 2843716 68860838 ~ 68861368 (+)
LOC110533853 LOC106561194 other downstream 539708 72250884 ~ 72253809 (+)
G181995 NA other downstream 1627650 73341380 ~ 73342277 (+)
LOC110501876 LOC106561170 other downstream 1863035 73456669 ~ 73580075 (+)
G182139 LOC106561173 other downstream 1893162 73606892 ~ 73610237 (+)

Expression


Co-expression Network