LOC118941481


Basic Information

Item Value
gene id LOC118941481
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 71944685 ~ 71960099 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037751.1
ATACAGGATTGAAATGAACGCTTCCAGCTCATCAACAGACAGATGCCAGGCAGTGTCTCCTGGCTCCGTGTGCGCCTTAGCCACAGTACAGTCCCTGAATGCTTTGAATGTCCATGCCACATAAACAACGAAAGCTGtgaCCACTCTGTATCAGAGCCTGGGCACATGGAGGTAAGGGTCACACGCCTCCCCACGGCTGAACGACGTAGATGGAAACAGCTGGGGCTCTGTCCCTATTTTGGTCAAGGAGAATACCAGCTTCAGCTGTGTCCAGTGCGTCCAAACTCGGGATCCACAAGAGCAGAGAGACAGTCACGTGATCTTCTACCCCTTGGGGCAGGTGCCGGTGTTTCCTGGTCCCCTGGCTGATGCTGTTCCCCACgaaacctctcctcctcccctggaCATCGAGGGAAGTCCCGCCTATGCCGTCAGATCCCTACTGGACTGCCAACgtccagtacctggtggactgggaggggtacttCCCAGAGGAGCTGTGTTCCGTTGGAGGAAATTTTGGATCCCAACATcatccatgatttccatcttcgCCCGAACCGCTCCTCATCCTCGGAGCCATCCCTCTGGCCGGCTttgtcctgcggctggagccgcgtgtcagggggtgaggggggaggggtaCTCTCAGGTCTACTCCCGCTCCTTCCCTCCGGCATTCGACGTCACCGGTTTACTAACCACCAGCCCTGGCAACCATCTTTGTGTGCACCTGGCACCCATCATTACGCATAACTGTGTCTCATCATGAGACACACCTGGACCCTATCACTtcactgattacctcccctatatctgtcacttccttAGTTCCATTTCCCAGGCAGTATTGACTGTTTCATGTCTATGCGCTACTCATGTTTCTTGTATTGTTCTATGTTCCGTTTATTATCAAACTCACCACCTGCACTTGCTTTCCGACTCCCAGTGTATACGTTACAAGCTCAGTAATGATGGCAAAACAGCTGACCTCGCATAAGGGTGGTTGTGCCCTTACGAAAAAGTTTGcagttagagtacagtacagcaaaAACTGCATCCAAAATATCACAGTTGattgcagttactgcacttttactgcagtttcaaaactgaaATCCTTTTTTGAAAGGGTGAGGTAAATGCCCAATGAAGATATTAATTCAAATCAATATAATATTAATTCTGCAATGGTCATTCTTTCTCCCCCAAACAGACATTTAACTGAATGTGCAACACAACTGGTTGACTGAGAAAAAATGTGAGCGGGAACTTCACCTGGGAATATTTCCCACAGTATTTATGTAACTGGGACAAAATATTACAAGATCCATTAATAAAACCAACTATATAAAACATCACAACACTTATACTCTGACGTCTCACAAGTGCACAATGTGTTTTTCATAATGTCTTTATCTGCCATCTTGACATTCCCTTTAGACCAGCGTTTCCAAAACctcaaggggtgcacgttttggtatttaccctaacactacacagctgattaaaatgatccatgcttgatgattagttgattatttgactCAG
>TU204836
GGATTGAAATGAACGCTTCCAGCTCATCAACAGACAGATGCCAGGCAGTGTCTCCTGGCTCCGTGTGCGCCTTAGCCACAGTACAGTCCCTGAATGCTTTGAATGTCCATGCCACATAAACAACGAAAGCTGGTGAGTGCATTGCTGATGTTGTTTTTTTGCTTGAGATGTAGGGCCTGCTCTCTCAGTGGAGACATTTTGTGCTGATAATCGGCCCTTAGCATTGTCACCTGCTTGTTCTATCTCTTCCTTTCTCCTGTCTTACTGTTTTATTTGGTAATGGAGTGGGCACCTGC

Function

NR:

description
uncharacterized protein LOC110495166

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037751.1 False 1551 mRNA 0.47 3 71944685 71960099
TU204836 True 296 lncRNA 0.35 1 71944690 71944985

Neighbor

gene id symbol gene type direction distance location
LOC110495533 lysmd4 coding upstream 172439 71766251 ~ 71772246 (+)
LOC110495511 arrdc4 coding upstream 230955 71705084 ~ 71713730 (+)
LOC110495497 NA coding upstream 501922 71432338 ~ 71442763 (+)
LOC110495472 NA coding upstream 681860 71255348 ~ 71262825 (+)
LOC110495464 mctp2 coding upstream 794711 71108902 ~ 71149974 (+)
LOC118937292 NA coding downstream 1620 71961719 ~ 71982821 (+)
LOC110495562 LOC106561144 coding downstream 35595 71995694 ~ 72008263 (+)
LOC110495604 LOC106573778 coding downstream 99757 72059717 ~ 72065199 (+)
LOC110533853 LOC106561194 coding downstream 290785 72250884 ~ 72253809 (+)
LOC110495632 LOC106561195 coding downstream 376703 72336802 ~ 72343356 (+)
G179651 NA non-coding upstream 469773 71474644 ~ 71474912 (+)
G179649 NA non-coding upstream 473152 71471331 ~ 71471533 (+)
G179647 NA non-coding upstream 474754 71469696 ~ 71469931 (+)
G179564 LOC105023478 non-coding upstream 520040 71353606 ~ 71424645 (+)
G179530 NA non-coding upstream 627846 71316442 ~ 71316839 (+)
G180438 NA non-coding downstream 883 71960982 ~ 71961201 (+)
G180449 NA non-coding downstream 18529 71978628 ~ 71978830 (+)
G180454 NA non-coding downstream 26672 71986771 ~ 71986991 (+)
G180456 NA non-coding downstream 28210 71988309 ~ 71988640 (+)
G180458 NA non-coding downstream 29979 71990078 ~ 71990556 (+)
igf1ra igf1r other upstream 1136781 70794530 ~ 70905277 (+)
G177812 NA other upstream 1831245 70107286 ~ 70113440 (+)
G177067 NA other upstream 2487252 69456558 ~ 69457433 (+)
G176725 lonp2 other upstream 2986799 68956263 ~ 68957886 (+)
G176612 LOC100846954 other upstream 3083317 68860838 ~ 68861368 (+)
G181995 NA other downstream 1381281 73341380 ~ 73342277 (+)
LOC110501876 LOC106561170 other downstream 1616666 73456669 ~ 73580075 (+)
G182139 LOC106561173 other downstream 1646793 73606892 ~ 73610237 (+)

Expression


Co-expression Network