LOC110495562 (LOC106561144)


Basic Information

Item Value
gene id LOC110495562
gene name LOC106561144
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 71995694 ~ 72008263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570893.2
TACCCAGTCTAAACACTCGCAAATCGCCTGAAACGGCGCGAGGTGTCGGGGGACTGAAGAGGGGTCCCAGCGGCGTCATGTAGAGCCGATCATTGTCTCTCACACTTTCTAAGTATCCATTACACAACAGTGAGCAAGGCAAGGAGTCGGGCCAGAGATATCAGCAGCCCATGTGAAGCAGCAGCGGTGCCCGGAGGGCTCTTCCTCTCAACGTCAACGAGAACCAACTAAACTGAGATCAGGAATACAAGCGTAGAGATGAGAACAACTGTTAATTATGGTAATATTTTATAAGACGTGAACGTTTATATCGTGGGAATGTTCAGTCAACGGAATTAGGAAGAATAGTATCCAAGTGTATTAGAATCAATGAGTTGATCGGGTGCTCTATTTCAATGCGAATTATTGTGTGCAAAAAATCACTTTGATTTCACACTCAGTATTTGAGACACCTTCGAGGGAAACCATGAATGGAGGTCGGCATTTTCCACCAATTTAAACAACGGTATATGCGAAACATTTGGATTACTTTGCTGCACAACACCTATTTTGGGTGGAATTTCGGACTCGGGACTTCTCGCCTTTGCGCTTTCCTCGCGTTCAGCAGCTAAACTTGGAGGGATCCATGCAGTCGCAAAGggagaggagagaagtgcgACCCCGTGCTGGATGGACGGTTATGGGGAAGGGAGTAGCAGGACCTTCGGCGCTTGAAGTCGGCAAGATCCTTGTTTTGTTTCTTTGCCTGTTTCCTTCTGTGAGTCTGCAGTGTAAGATCCTCAAGTGTAACTCAGAGTTTTGGGCCTCCACCTCAAGCTCTGGCCCGGAGGAGGAGTTCTGTACGGCACTACGGGCGTACAACAACTGTGTACGCCGCACCGCACGCACTTGCAGAGGCGACCTGGCCTACCACTCAGCCCAACATGGCATAGAGGACCTCATGAGTCAACACAACTGCTCCAAGGAGGGACCTACAACCCAGCCTCGAGCCCGGACCCCCgctccacccccaccaccacagcTCCAGCCTGACAGCCAGGAGCGCTCCGATGGGCCGGAGCAGTGTCACTACGAACGCAGCCTTCCTCGCCATTCCTCGCCACCCAACTACACCCACTGCGGCTTCTTTGGAGACCCACACCTCCGTACCTTCAGCGATGACTTCCAGACCTGCAAGGTGGAGGGAGCCTGGCCACTTATCCATAACAAATACCTGTCTGTTCAGGTGACCAACACACCTGTCGTGCCTGGCTCCTCTGCTACGGCCACCAGCAAGTTGACAATCATCTTCAAGAACTTTCAGGAGTGTGTGGACCAGAAGATGTACCACGCAGAGACAGACGAGCTGCCTGCGGCGTTCGCCGACGGCTCCAAGAACGGTGGAGACCGCCACGGGGCCAACACGCTGCGCATCGTGGAGAAGGTGCCTGGGCAGCATGTGGAGATCCACGCACGCTACATCGGTACAACTATCGTGGTCCGGCAGGTGGGCCGATACCTGACCTTTGCTGTGCGGATGCCAGAGGAAGTAGTGAACTCTGTAGAAGACCGAGACAACCAGGACCTGTATCTCTGCCTGCACGGCTGTCCCGCCAACCAACGTATCGACTTCAGGACATTCAGGGACCGTGCTGTGGAGGGCCACGGCCAGGTCAATAGCAGGACAGGCAGCCAGTCCCATGGGTTTACCTATCAGGCTGCCATGGCCAAGTGTAAAGAGCGCCTCCCAGTGGAAGACCTGTACTTCCAGTCTTGTGTGTTCGACCTGCTTTCCTCTGGGGACATTAACTTCACCATGGCTGCCTACTATGCTTTTGAGGACGTGAAAATGCTCCACTCCAACAAGGACAAATACCACATTTTTGAAAAGGATGCTTTTGGGAGTAATGCAGCACCGAGGGGATCAGATATGTTCTCGCTAGTTCTCAACTGTCTGGCTATGTTGTTGTGGATTGAGTGCTGCTGGGTTCATCTATAGTGCCCTGCCAACATCATCCTCATTATGCTAGCTGTCAGTGGGTGTGAAACAAATCCCTCACCGTGTCATACTTCACCTCTACTGCTCTGTTCTCAGTGGCTGGTGGCCAGTGTAGACAGCAGGGCCGTCCATGCCTCTGAGGGGACACAGCAGCTCATTTGCAATCAAACTCATCCCAGCCCATGGTCTCATCATTGTTGTCATCATGTGTTGACTTACATCTGGGGAAGAGGTGAGCTCTCTGTGCTCCCACCTATCATTGCGTTCATTCAGCTGGTTTAAGGACTGGTCCTTTGATTAAAGGAGCAGTGGTGAGAGAGGAGAACCCAGGAGCCCCAGCACTTTGGATATCCAGCTGGGATTAAATCCTACATTCCCACTGGGACTGCATGCCTATGGGAAGCAAGACAAGATGATCTCTTACAGAAAGAAGAGTTTGCtgatctcctctcctcacttgtGCCAAGCCAGCGGAGCTCTCTGTGGCTCATGGGTCTGGGCTAGAGGACATGACAGGGGCTTTTGTTAATGTCTGTCCAGAAGGAGCTCACTGTTTGATGAGCTTCCAGCTTTGGAAAAGCTGGAGCTTTTTGGAGAAAGTACTCGGGCCAAAAGGATGTCAAAGCAGCGAGTGACAGTCTAGTCTGCTGTGGAGGTTAATAGGTCATAATGCCAGGTCTTTtgtaagattgtgtgtgtgtggttgtgcccCTCTGTGGTTTAGTGTGTCCGCCAGAACAGGCTGTCTTGAATATTGGCGTTTAAAGTGTTAATTATgataaatgtattttttgtatAGGGTGTAATTAAGATGTTCATAAGAAAACAGCCCTTTACAAACTTTACCAAGGGCACAGATAATGCAGAAACCCAGATCACGTTTACAGAGTATATCTCATCCCTTCattcaaccaatcaaccaaccaacatGTACCATGGCCAAGAAATTGATTTCTACAGGTCTTTTGTGAGTTATTTCTCTTTTTCTAGGCAGTCAACAGTTCCACACATATGTAGGTATCATGGCCATGTATTTGGTTTGAGAAAGATAGTCTTTCTGACCACTCTGTAGAGGGCAGAAAGTaggtcctgtatcagaggaggctggtgggaggagctataggaggacgggctcattggaATGGAATAGTTGTCAAATCCAAAAGCAGCACCCGGCGTTATACCTGTTGCGTACATTGCCATTGGATGCGCCGAGTCGCATTAGTAGAAATCCTATGCAGCTGTTTCAAGTTCGAACACTTGCATGTGTGATGTAGAGCGGGTtaatgcttgatctgattgaatctaagCCTAAGTATTTTAACTTTTGATTGTGTAGAATGCTGGAAGGTGCTAAATGATCTTAGTGGATAGACATATTCATATTCAGCAGCATATGGCAAAGAAGTTGTCAGTTTTCGGTTTTGAATTGTACCTCTAGTCATATGCAGGACCCGTGTGATGTGCATACATCTACAGTGCAATTTTGATTTGTTGTAGTTTTCCAATTGCATTGTTTGTGTTCATAGTAATAATGTCATTCACCAGTAAGCCTAAATCTTGAGGCTGAGGTACTAATACCCCGAAGGCCTGCTATTTATGAACAAGACATTTAACCTACATTCTGATTTGATCTTTATTTAAATTATTTGTTGTATACCGAAGTAAAGCTCAAAGGATACAACCTTGTCAGACGATTTGCTTCACTTTTCCCTTCCTATTTCATCTCGGtagaatatatttagatttgaCCATTCCCTTAGTACTAATCTATTCAACAACTTAACAAGGTAATATATCCCTACACTGAAGTGTTTGGCAGGCCTAACTACATGTACTGGTGCAGTTTGTTCTTAGTCTGGCAAAAAAAGTTGTTCAAATAAACAAACATGATTGTAACATTGAATCTTGTTTTTATAGATGTAACTTGTATTTTGAGTTTTCTATATGGTTCTACATGTGTAATGTGAGATTGTATATACGTTTGTGtgtaaaatattgtattttatcTGTATTGAATTTCACTACAGTTTTGAATATGAGAAATGGTTTGGTGAATGtaaccttttttttaaaacaatttgaTGAAAACGTGAACACCACATCACAAAGCTGTAGGGTCTTTAGGGGATAGTGTTCAGCTATCTATCAATGGCAGGGATCCTATCCTGGTTACTGTAGTTTCAGAGCATTCATTTTCTTGCTCAGGAGCAGACACAAGTTAACCTGGATTCCATCCAGGTGGATATCTAAAAAGGGAATACAAGAAAGTGTCCCTTTTTTTGGTGTTCATGTTTTTAATTTTAAAGCACTTTATGTTCTTTTCACTTAGCTCTTACTTGGTTTGAACTTGATTGTGAATAGAGGTTGTCAGATTTGTAACGGTATAAAATATGGCATTTAAACACTTGGCCGAATGGCAGAAGCCAGAAAGATCAAACTGTGTTTGAATGTAGGACACAAGCGGTGTGACACACCAACTGTTTATATTGTAAAttatttattaaataaaatatGTGTCTTGCTAA

Function

NR:

description
repulsive guidance molecule A-like isoform X1

GO: NA

KEGG:

id description
K23096 RGMA; repulsive guidance molecule A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570893.2 True 4506 mRNA 0.46 4 71995694 72008263

Neighbor

gene id symbol gene type direction distance location
LOC118937292 NA coding upstream 12873 71961719 ~ 71982821 (+)
LOC118941481 NA coding upstream 35595 71944685 ~ 71960099 (+)
LOC110495533 lysmd4 coding upstream 223448 71766251 ~ 71772246 (+)
LOC110495511 arrdc4 coding upstream 281964 71705084 ~ 71713730 (+)
LOC110495497 NA coding upstream 552931 71432338 ~ 71442763 (+)
LOC110495604 LOC106573778 coding downstream 51593 72059717 ~ 72065199 (+)
LOC110533853 LOC106561194 coding downstream 242621 72250884 ~ 72253809 (+)
LOC110495632 LOC106561195 coding downstream 328539 72336802 ~ 72343356 (+)
tln2b LOC106561152 coding downstream 880054 72888317 ~ 73030225 (+)
LOC110495666 LOC106573503 coding downstream 1047865 73056128 ~ 73069598 (+)
G180458 NA non-coding upstream 5138 71990078 ~ 71990556 (+)
G180456 NA non-coding upstream 7054 71988309 ~ 71988640 (+)
G180454 NA non-coding upstream 8703 71986771 ~ 71986991 (+)
G180449 NA non-coding upstream 16864 71978628 ~ 71978830 (+)
G180438 NA non-coding upstream 34493 71960982 ~ 71961201 (+)
G180468 LOC106561145 non-coding downstream 9840 72018103 ~ 72018501 (+)
G180483 NA non-coding downstream 35123 72043386 ~ 72046632 (+)
G180481 NA non-coding downstream 44041 72052304 ~ 72052540 (+)
G180501 NA non-coding downstream 67670 72075933 ~ 72076159 (+)
G180502 LOC100380853 non-coding downstream 70811 72079074 ~ 72079455 (+)
igf1ra igf1r other upstream 1187790 70794530 ~ 70905277 (+)
G177812 NA other upstream 1882254 70107286 ~ 70113440 (+)
G177067 NA other upstream 2538261 69456558 ~ 69457433 (+)
G176725 lonp2 other upstream 3037808 68956263 ~ 68957886 (+)
G176612 LOC100846954 other upstream 3134326 68860838 ~ 68861368 (+)
G181995 NA other downstream 1333117 73341380 ~ 73342277 (+)
LOC110501876 LOC106561170 other downstream 1568502 73456669 ~ 73580075 (+)
G182139 LOC106561173 other downstream 1598629 73606892 ~ 73610237 (+)

Expression


Co-expression Network