LOC100135856 (LOC100135856)


Basic Information

Item Value
gene id LOC100135856
gene name LOC100135856
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 72070481 ~ 72090783 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990293.1
CTGGGGGAATTGAGGAGAGAATGAAAACAGTGCCGCTGCTGTTGGGAaaaaagggagggagaaaaaaacgTTATTAAAGGACTTGAACCTGGGATTTGTTCGTAGACAAATGGTCTTCGTTTAAAATGAACATTGAGGAATATTGGTGGACATAATTGAGTTTAATTGCGTACAATCTATCAATGTCAGCGATTAAAAGGATAATATATGCAATCGATTTGGATTTTTGAGTGTAGCTTCGATTAGTTCTTCTACCTTATCAGTCATGCAGTTAGAATTACGAACATTGATGTTTGGAATTGTAACCGTGCTGGTATTATTTCTGATCATTGCTGATATTGCTGAAGTCGAGAAAGAAATTGCAAATGTAGCAGTGAAGGCCAATCCTAAACCTTTAGTCAGTGAAGGGGAGGACAAGagccctgcttctccttcatacTCGAATAATACCACCAAGCTCTCTACAGATAACTGGATGTTCAACAGGACCCTCTCCAATCtcatcagGAAGAACATCCTGAGGTTTTTCGACCCAGAGAGGGACATCTCTATTCTGAAGGGCACATTGAAACCTGGAGATGTCATCCACTACATCTTTGATCGTCAGAGCACTACCAATATCTCAGAAAACCTATACCAGTTGCTGCCCACTGCATCCCCCATGAAGAACCAGCACCACAGGCACTGTGCCATCATAGGGAACTCTGGGATCCTACTCAACAGCAGCTGTGGGCCAGAGATAGACTCCTATGACTTTGTTATCAGATGTAACCTGGCGCCAGTGGAGGAGTATGCTGGGGATGTGGGCCGGCGCACCAACCTTGTGACCATGAACCCATCTGTGGTGCAGCGGGCCTTCCAGGACCTGGCCAGTGAGGAGTGGAGGGAGCGCTTCCTGCAGCGGCTCCGGAGCCTCAGCGGCAGCGTACTGTGGATCCCAGCCTTCATGgccaagggaggagaggagagggtagagtggGCCATCCGTCTCATCCTGCTGCACACGGTTGATGTGCACACCGCCTTCCCCTCACTGCGCCTTCTCCATGCTGTCAGAGGGTATTGGCTGACCAACAACGTCCAGATAAAGAGACCCACCACTGGTCTACTGATGTACACCATGGCCACTCGCTTCTGTGAGGAGATCCACCTGTACGGTTTCTGGCCTTTCCCTCAGGATTCACAGGGGAAACCAGTGAAGTACCATTACTATGACACTCTGACCTACGAGTACACGTCCCATGCCAGTCCACACACTATGCCACTGGAGTTCAGGACCCTGAGTTCACTCCACAGACAGGGGGCGCTGCGTCTCCACACTGGCTCTTGTGATGTAGGAACATAATCTAAAAACACAGCAaggaatgtactgtatgtctccatCAATGACCCTTACGCTTTTGGGAAAATACCTCCTGCTTAGTTGATGTCTGTCAGACACGGACATCTCAGAGGAAATACTTCCTGTATTAAACTGTAGGACATTTTTATGTAGCTGTGACTTTAGTTGAATGACCGTATGCAGGATACTGCATGTCTTATTTGGGCTCATGTTGTCCTTCAAGAGACATGAGCACTGAAGAGTTTTTAACATTTCTACAGTAACCTGTGAAAATTTTACCTAAAACGGACactttttaatttgttaaaaaataaCTAATTTATGTTGGTAAATGCTTTTTTTCAACAAGAATAACTTTTCTATTTACATTTAATGTGTCatataaaatgtatataattACAACATTTATAAACTTTTTATTGATATTTTGATAATTATTCCTTTGAATTATATGATAAATCTACTTCATCACTACTGTTGGAGACATATCAGACAGATCAAAGGCAGGAGCACCAGCCTGCATAGCACTGATTGAGCCACAAGATGGAAGCACTTCTTCATAAGGAAACTATAAATAGTAGTACATTTagttttccacatttagtttaTTAGTGAACATGGGTTCAACTACATACTACTGTGTgatgtttgagtttattttatttttacagggacagtgcacattaatcaacgtttcagtagaagtgccggttttagccatccggctaattttcaaccgcagtccctgggcagttTTGTTAGCTCTCACCTTAAATTGGGAATTGTATTTAATGAGTAGCCTAATAGTGTAGGCCTAGTTTCTTATTTTTGCCTTAACTTCTTC
>NM_001124241.2
GACAAATGGTCTTCGTTTAAAATGAACATTGAGGAATATTGGTGGACATAATTGAGTTTAATTGCGTACAATCTATCAATGTCAGCGATTAAAAGGATAATATATGCAATCGATTTGGATTTTTGAGTGTAGCTTCGATTAGTTCTTCTACCTTATCAGTCATGCAGTTAGAATTACGAACATTGATGTTTGGAATTGTAACCGTGCTGGTATTATTTCTGATCATTGCTGATATTGCTGAAGTCGAGAAAGAAATTGCGAATCTTGGAGGTTCCAGACAATTATACTTGCAAACCCTCATTCCCAAGCCAAACAGAAATGTAGCAGTGAAGGCCAATCCTAAACCTTTAGTCAGTGAAGGGGAGGACAAGagccctgcttctccttcatacTCGAATAATACCACCAAGCTCTCTACAGATAACTGGATGTTCAACAGGACCCTCTCCAATCtcatcagGAAGAACATCCTGAGGTTTTTCGACCCAGAGAGGGACATCTCTATTCTGAAGGGCACATTGAAACCTGGAGATGTCATCCACTACATCTTTGATCGTCAGAGCACTACCAATATCTCAGAAAACCTATACCAGTTGCTGCCCACTGCATCCCCCATGAAGAACCAGCACCACAGGCACTGTGCCATCATAGGGAACTCTGGGATCCTACTCAACAGCAGCTGTGGGCCAGAGATAGACTCCTATGACTTTGTTATCAGATGTAACCTGGCGCCAGTGGAGGAGTATGCTGGGGATGTGGGCCGGCGCACCAACCTTGTGACCATGAACCCATCTGTGGTGCAGCGGGCCTTCCAGGACCTGGCCAGTGAGGAGTGGAGGGAGCGCTTCCTGCAGCGGCTCCGGAGCCTCAGCGGCAGCGTACTGTGGATCCCAGCCTTCATGgccaagggaggagaggagagggtagagtggGCCATCCGTCTCATCCTGCTGCACACGGTTGATGTGCACACCGCCTTCCCCTCACTGCGCCTTCTCCATGCTGTCAGAGGGTATTGGCTGACCAACAACGTCCAGATAAAGAGACCCACCACTGGTCTACTGATGTACACCATGGCCACTCGCTTCTGTGAGGAGATCCACCTGTACGGTTTCTGGCCTTTCCCTCAGGATTCACAGGGGAAACCAGTGAAGTACCATTACTATGACACTCTGACCTACGAGTACACGTCCCATGCCAGTCCACACACTATGCCACTGGAGTTCAGGACCCTGAGTTCACTCCACAGACAGGGGGCGCTGCGTCTCCACACTGGCTCTTGTGATGTAGGAACATAATCTAAAAACACAGCAaggaatgtactgtatgtctccatCAATGACCCTTACGCTTTTGGGAAAATACCTCCTGCTTAGTTGATGTCTGTCAGACACGGACATCTCAGAGGAAA

Function

NR:

description
alpha 2,8-polysialyltransferase IIb

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG:

id description
K06612 SIAT8B; alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8B)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990293.1 False 2186 mRNA 0.43 5 72070481 72090783
NM_001124241.2 True 1411 mRNA 0.49 6 72071209 72090679

Neighbor

gene id symbol gene type direction distance location
LOC110495580 LOC106561145 coding downstream 20296 72012258 ~ 72050185 (-)
LOC110495486 LOC105023478 coding downstream 638360 71422009 ~ 71432121 (-)
LOC110495479 mctp2 coding downstream 906424 71134265 ~ 71164057 (-)
LOC118941478 NA coding downstream 964750 71104079 ~ 71105731 (-)
ttc23 ttc23 coding downstream 1125122 70926632 ~ 70945359 (-)
LOC110495618 LOC106561149 coding upstream 15223 72106006 ~ 72175447 (-)
LOC118941485 NA coding upstream 209549 72300332 ~ 72309971 (-)
roraa LOC106561150 coding upstream 366083 72456866 ~ 72744512 (-)
LOC118937294 NA coding upstream 683281 72774064 ~ 72775649 (-)
c2cd4a LOC106561196 coding upstream 781188 72833292 ~ 72877678 (-)
G180688 NA non-coding downstream 1451 72068666 ~ 72069030 (-)
G180680 NA non-coding downstream 11588 72058478 ~ 72058893 (-)
G180679 NA non-coding downstream 12989 72056753 ~ 72057492 (-)
G180663 NA non-coding downstream 77907 71992371 ~ 71992574 (-)
G180706 NA non-coding upstream 8336 72099119 ~ 72099885 (-)
G180803 NA non-coding upstream 155731 72246514 ~ 72246777 (-)
G180827 NA non-coding upstream 168066 72258849 ~ 72259049 (-)
G180846 NA non-coding upstream 180611 72271394 ~ 72271691 (-)
G180874 NA non-coding upstream 202947 72293730 ~ 72294015 (-)
G179754 NA other downstream 595502 71474372 ~ 71474979 (-)
G179310 mef2a other downstream 1000277 70998045 ~ 71070204 (-)
G179215 NA other downstream 1164227 70905372 ~ 70906254 (-)
G180716 NA other upstream 20185 72110968 ~ 72111663 (-)
G182494 NA other upstream 936601 73011478 ~ 73066724 (-)
LOC110495704 nrg4 other upstream 985244 73076020 ~ 73078379 (-)
G182708 NA other upstream 1254167 73344950 ~ 73345847 (-)

Expression


Co-expression Network