LOC110495618 (LOC106561149)


Basic Information

Item Value
gene id LOC110495618
gene name LOC106561149
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 72106006 ~ 72175447 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570953.2
ATGCAGGTGAAAAAACAGAGGGGCTCGGACAGGAGCACTGGAGAGGGTACCCGTAAAAAGTCATCATGCTTCTCAAACATCAAGATATTTTTGATATCGGAATGTGCCCTGATGTTGGCACAGGGCACTGTTGGAGCCTACCTGGTGAGTGTCCTGACCACCCTGGAGCGACGATTCAACCTCCAAAGTGCCGATGTGGGTGTGATCGCCAGCAGCTTTGAGATTGGCAATCTAGCTCTTATCCTATTCGTCAGCTACTTCGGGGCCAAAGCAAACCGGCCAAGGTTGATTGGCTGTGGGGGTATCGTCATGGCGCTAGGAGCTCTTCTGTCAGCACTGCCAGAGTTTCTAACCAAACAATACGAGCATAAGCCAGGGCAGACTTGGAGGACTGAGGTGGGCAGGAATGGGTGCGCCAACAGTACCAGGAATGGTGGGCAATATATAGAGGAGTTGTGTTCCAACAAGGCAAACACCAACATGATGTACCTGCTGCTGATTGGGGCCCAGATGCTGCTGGGGATTGGAGCCACCCCAGTTCAGCCCCTGGGTGTGTCCTACATAGATGACCATGTGAAGAGGAAAGACTCCTCTCTGTATATAGGGATCGTCTTCTCTACTTTGGTGTTTGGGCCTGCCTGTGGTTTCCTCCTGGGGTCTCTCTGCACCAAGTTCTATGTGGACTTCCTCTTCATCGACACCAGTAAACTGGACATCACTTCTGATGACCCTCGGTGGATCGGAGCCTGGTGGGGAGGCTTCCTCCTGTGTGGTGCCTTGCTCTTTTTCTCATCCCTCTTCATGTTTGGCTTCCCCCAAACCCTGTCAGACCGAGAGAAGGACAGGGACGGTGGAGGGGAAAGTGAACAGGCCAtgctcccctctacctctctgcccCTGGACTATAATGAGATGCCCAAGTCAAGCAACGGGGTCGTACACAATAACCATGAGCCTGTCAACGGCCCCACCTGCTTTCAGCAGCTCAGggTGATCCCTAAAGTGACCAAGCACCTCCTGTCCAACCCAGTGTATACCTGCATCACGCTGGCTGCCTGTATGGAGATTGGTGTAGTGGCTGGCTTCGCTGCCTTCCTGGGGAAGTACCTGGAGCAGCAGTTTAACCTCACAACCTCTTCAGCCAATCAACTACTAGGTATGACGGCCATCCCCTGTGCTTGTCTGGGCATATTCCTGGGGGGGCTTCTGGTCAAGAAGCTGAACCTCTCAGCCCTGGGGGCCATTCGCATGGCCATGCTGGTCAACCTGATCTCCACCGCCTGCTAcgtctccttcctcttccttggTTGTGACACAGGACCTGTCGCTGGGGTGACCATCCCCTATGGCAACGAgacactGCAGGTGGGCGAGAAACCAGAGGTCCCCTGCATGAGTAACTGTAACTGCTACACCTCCTCAGTCAGCCCGGTGTGCGGCTCCAACGGAGTCACCTACCTGTCCTCCTGCTTTGCAGGCTGCACTACAACAGTGAGCACAGGCATCTACCCCCCTCTGGCTCAGAATTTGACAGGGTGTACATGTATATCCAGTGACAGTGAAATGGCCACAGCTGTCCCAGGGAAGTGTCCCAGTCCAGGCTGCCAGGAGGCCTTCCTCACCTTCCTCTGTGTCATCTGTGCCTGCTGTATGATCGGCTCCATGGCTCAGACACCCTCCGTCATCATCCTCATCAGGACTGTGAGCCCTGAGCTGAAATCATATGCTCTTGGAGTTTTGTTTCTCTTGCTGCGACTACTTGgattcatcccccctcctctgaTCTTTGGTGCTGGGATTGACTCAACTTGCCTTTTCTGGAGTACAGAGTGTGGGGATAAGGGAGCCTGCCTGCTGTACGACAATATCGCCTACAGACATCTGTACGTGAGCCTGGCCATCGGTCTTAAGGTCACCGCCTTCATTCTGTACACCACCACCTGGTACTGTTTACGCAAGAACTATAAGAAATACATAAAAAATCATGAGGGCTATACGACACCAACCGAACTGTTCCCCTCCAGTCTCACAATGGACAACATGAAGGATGGGAGTCAGATCCCAAACAAGACAACGTTTATATACAACCTAGAGGACCATGAGTTGTGCGAAAACATGGAGTCGGTTTTATAGTTTCTGAACCATCCAAAGGACTATCTGCTACATTCATTATTAAATAAGTTCATAAATGACGATCATCCtcctttgtatttttttttattcaacatTAGAATGTTTTCTATCTGAAGTCCTATACGGGCCCTGGAAGACTGTTGCTGCTCTCTTCTCCTTGGTAACCTTTGATAGAGGCCATTTTGTTTGTAGAGGTGTTATCAGCAAGGGTATAGTCCAGTACCAGTGAACTCTGTTGTGATTGTTAGTAGAAGACAACTACTGTCTGGCTCTGTCCTGCTCCTAGGTGATTAGATGGTCAATATTATGCTACTGTTATAGGCGCCATACTTCTACTCGCCCAAGTATAACATGGATCCAGTCACTGAAAATGACGGGACCTGTTTGGTCAGTTTCACTATGGGTTACATTTCGTTCCCTTCCACCATGGAACCAAGACATAAGTATAAATGATAGGACGTTTCTCCACGTTGCCAAGAATATATAAATAAAGAGATGTTGTGTCATTATGTGTTGCATAATATACGTTTTATTTTGATGAAACAAACAGAGAGCTTTCTCATGTACTATATAGTGGAGAAAGTAGAGCGCTTATATAGGACAATGTTCTAACGTTACTGTATGCATTCAGTGTCAGAATGAAGTTCAGTGGTAGTAGCTGAAATGGTGTTAATGTCAGCATACACTGTACAAAAACAGTACTCTTACTGGAACACAGACACTGTTTCTGACTATAAACATAGAATTGAGTTTGTCTTTCTATGggttcaaatgttatattattcaTATACATTTCTATCATTGTGAAAGAGATAAATCTGTCTTTTTGCACAGTCCTTTCTGAATGTTGTAAAAGTTTCTTTGCCTTTctatttacatgttttatttgctTAGTTTATTTAACCCTAATATGTCTTAATATGAGGGATTATCCAGATAAGAAGTATTATTTATGTTTTGAGGGGGGCTTTTGCACCATAGTAGAAAAGCAAAGAATGGAAAATCAAcaagtctttctgtgtgtgttattatgaCATCTCTTCAAGCTAAACAATGAAGATTCAAGTTTATATATTTGTACTGTAAATGTGAGGTTCAGAATGTTGTATTAGAATTAACTAAACTGAGATGATAATATAGGAATTTGACATTTAATTATAAAAAAAAGGTTTAGTTGTGATATGCATCACACAAAATGGGAGCCAATGTCATAACAAGAGAGGAATAAGAAACAAAGTTCAAAGCCAACTACACCAGTGCTTTGCGTAGGGCAGAGCAGAACTGCTTGTTACTTCAGAGCATGCAGAATCTGCATGTGAATTCACACAAAAGGTACTGGGAGTAATTTATATGCAATGGCTGATAATCCTACAAGGTAATAGGCATTCTTATTTTGTTATCCCTTGACATCATTTTTTGAAGACCCTCAAGGCCTGATGGCACACCTAACTTCTTTTACAGTTTCTCTACAGCAAAACTTTTAGCATTGTCCCTTTTCTTACACTTTTTTGTATGGCAGGATATAATTTATTTTACTCTGGAAATAAAATTATTTTTCAGATAATAATCC
>XM_021570960.2
GGCTGTCAGTGGTTGGATGAGGCGCAGAGTCGGAACATAGGCTACACAAGTTGTGGTGGAGGGAGTGAGTGCATTGCTTAAATACTGTATAACAGGCTACATGACCAAAGGCCATGCCAAGTAAAGGTGGAGCAGCGACTGCGTGGCAAGATTCTTATCGATTGTTTTTAGAATCTACGCATTGTTATGCTTAACATTCGGGAACGAACGTCAAGATTCTGAAAAAAATGCTATTTGAGAGAGAACCTGGCGTCTCTCATTCTCGTATGCATATGAGAAAATCGTCGTGGAGTTCATGTGTCTTATTCGACGAAGTGGCAATGTTTAGAGCTTGCGGAGGGGCAGCCCTTTGGAGTCTGGCTTTATATTTACTGTAATAGTTAGTCAGATGTAAAGCATAGGTTGAACGAGAAAATAGACAGAGACCGTGCGTCAGACACGTGCTGAATGTAGCCTACACAGGGTCCGGTTACCCTCTGGATTTATTTTCTCGCTGTAATACAAAGTAGCAGCTCCAAAGGATGCAGGTGAAAAAACAGAGGGGCTCGGACAGGAGCACTGGAGAGGGTACCCGTAAAAAGTCATCATGCTTCTCAAACATCAAGATATTTTTGATATCGGAATGTGCCCTGATGTTGGCACAGGGCACTGTTGGAGCCTACCTGGTGAGTGTCCTGACCACCCTGGAGCGACGATTCAACCTCCAAAGTGCCGATGTGGGTGTGATCGCCAGCAGCTTTGAGATTGGCAATCTAGCTCTTATCCTATTCGTCAGCTACTTCGGGGCCAAAGCAAACCGGCCAAGGTTGATTGGCTGTGGGGGTATCGTCATGGCGCTAGGAGCTCTTCTGTCAGCACTGCCAGAGTTTCTAACCAAACAATACGAGCATAAGCCAGGGCAGACTTGGAGGACTGAGGTGGGCAGGAATGGGTGCGCCAACAGTACCAGGAATGGTGGGCAATATATAGAGGAGTTGTGTTCCAACAAGGCAAACACCAACATGATGTACCTGCTGCTGATTGGGGCCCAGATGCTGCTGGGGATTGGAGCCACCCCAGTTCAGCCCCTGGGTGTGTCCTACATAGATGACCATGTGAAGAGGAAAGACTCCTCTCTGTATATAGGGATCGTCTTCTCTACTTTGGTGTTTGGGCCTGCCTGTGGTTTCCTCCTGGGGTCTCTCTGCACCAAGTTCTATGTGGACTTCCTCTTCATCGACACCAGTAAACTGGACATCACTTCTGATGACCCTCGGTGGATCGGAGCCTGGTGGGGAGGCTTCCTCCTGTGTGGTGCCTTGCTCTTTTTCTCATCCCTCTTCATGTTTGGCTTCCCCCAAACCCTGTCAGACCGAGAGAAGGACAGGGACGGTGGAGGGGAAAGTGAACAGGCCAtgctcccctctacctctctgcccCTGGACTATAATGAGATGCCCAAGTCAAGCAACGGGGTCGTACACAATAACCATGAGCCTGTCAACGGCCCCACCTGCTTTCAGCAGCTCAGggTGATCCCTAAAGTGACCAAGCACCTCCTGTCCAACCCAGTGTATACCTGCATCACGCTGGCTGCCTGTATGGAGATTGGTGTAGTGGCTGGCTTCGCTGCCTTCCTGGGGAAGTACCTGGAGCAGCAGTTTAACCTCACAACCTCTTCAGCCAATCAACTACTAGGTATGACGGCCATCCCCTGTGCTTGTCTGGGCATATTCCTGGGGGGGCTTCTGGTCAAGAAGCTGAACCTCTCAGCCCTGGGGGCCATTCGCATGGCCATGCTGGTCAACCTGATCTCCACCGCCTGCTAcgtctccttcctcttccttggTTGTGACACAGGACCTGTCGCTGGGGTGACCATCCCCTATGGCAACGAgacactGCAGGTGGGCGAGAAACCAGAGGTCCCCTGCATGAGTAACTGTAACTGCTACACCTCCTCAGTCAGCCCGGTGTGCGGCTCCAACGGAGTCACCTACCTGTCCTCCTGCTTTGCAGGCTGCACTACAACAAATTTGACAGGGTGTACATGTATATCCAGTGACAGTGAAATGGCCACAGCTGTCCCAGGGAAGTGTCCCAGTCCAGGCTGCCAGGAGGCCTTCCTCACCTTCCTCTGTGTCATCTGTGCCTGCTGTATGATCGGCTCCATGGCTCAGACACCCTCCGTCATCATCCTCATCAGGACTGTGAGCCCTGAGCTGAAATCATATGCTCTTGGAGTTTTGTTTCTCTTGCTGCGACTACTTGgattcatcccccctcctctgaTCTTTGGTGCTGGGATTGACTCAACTTGCCTTTTCTGGAGTACAGAGTGTGGGGATAAGGGAGCCTGCCTGCTGTACGACAATATCGCCTACAGACATCTGTACGTGAGCCTGGCCATCGGTCTTAAGGTCACCGCCTTCATTCTGTACACCACCACCTGGTACTGTTTACGCAAGAACTATAAGAAATACATAAAAAATCATGAGGGCTATACGACACCAACCGAACTGTTCCCCTCCAGTCTCACAATGGACAACATGAAGGATGGGAGTCAGATCCCAAACAAGACAACGTTTATATACAACCTAGAGGACCATGAGTTGTGCGAAAACATGGAGTCGGTTTTATAG

Function

NR:

description
solute carrier organic anion transporter family member 3A1-like isoform X2

GO: NA

KEGG:

id description
K14353 SLCO3A; solute carrier organic anion transporter family, member 3A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570953.2 False 3703 mRNA 0.45 10 72106006 72174926
XM_021570960.2 True 2621 mRNA 0.51 10 72107576 72175447

Neighbor

gene id symbol gene type direction distance location
LOC100135856 LOC100135856 coding downstream 15223 72070481 ~ 72090783 (-)
LOC110495580 LOC106561145 coding downstream 55821 72012258 ~ 72050185 (-)
LOC110495486 LOC105023478 coding downstream 673885 71422009 ~ 71432121 (-)
LOC110495479 mctp2 coding downstream 941949 71134265 ~ 71164057 (-)
LOC118941478 NA coding downstream 1000275 71104079 ~ 71105731 (-)
LOC118941485 NA coding upstream 124885 72300332 ~ 72309971 (-)
roraa LOC106561150 coding upstream 281419 72456866 ~ 72744512 (-)
LOC118937294 NA coding upstream 598617 72774064 ~ 72775649 (-)
c2cd4a LOC106561196 coding upstream 696524 72833292 ~ 72877678 (-)
LOC110495704 nrg4 coding upstream 900573 73076020 ~ 73078379 (-)
G180706 NA non-coding downstream 6121 72099119 ~ 72099885 (-)
G180693 NA non-coding downstream 27581 72078110 ~ 72078425 (-)
G180692 NA non-coding downstream 28445 72077352 ~ 72077561 (-)
G180688 NA non-coding downstream 36976 72068666 ~ 72069030 (-)
G180680 NA non-coding downstream 47113 72058478 ~ 72058893 (-)
G180803 NA non-coding upstream 71067 72246514 ~ 72246777 (-)
G180827 NA non-coding upstream 83402 72258849 ~ 72259049 (-)
G180846 NA non-coding upstream 95947 72271394 ~ 72271691 (-)
G180874 NA non-coding upstream 118283 72293730 ~ 72294015 (-)
G180897 NA non-coding upstream 137964 72313411 ~ 72314173 (-)
G179754 NA other downstream 631027 71474372 ~ 71474979 (-)
G179310 mef2a other downstream 1035802 70998045 ~ 71070204 (-)
ttc23 ttc23 other downstream 1161245 70926632 ~ 70945359 (-)
G179215 NA other downstream 1199752 70905372 ~ 70906254 (-)
G182494 NA other upstream 851937 73011478 ~ 73066724 (-)
G182708 NA other upstream 1169503 73344950 ~ 73345847 (-)
G182882 NA other upstream 1500765 73676212 ~ 73676423 (-)

Expression


Co-expression Network