XLOC_020688 (ampd2a)


Basic Information

Item Value
gene id XLOC_020688
gene name ampd2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1205787 ~ 1245226 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040897
GCGCTAGTATTGCTTTGCGAACGCATCTCACACAAACACCTGCCCATCGACCTGCGCACATCTATGGACGGAAAATACAAGGAGATcgctgagGAGCTGCTGGCCAGGAGCCTGACGGACAGTGACATGCGCTGCGCTCCGTATGAGTTTCCTGAAGAAAGCCCCATCGAGCAACTGGAGGAGAAACGCCACCGTCTGGAGCGGCAGATCAGTCAAGATGtcaaGCTTGAGCCCGAGATTCTGGTGCGAGCCAAACAAGACTTCATGAAAGTAGATAGCACAGCCGACCTGGAGTATCTGAAGGACAGTCAGGAGGATACAGTCGACTATCCTTTTATCGAGCGAGAGACGGTGACGGAGAGAGAGTTTCAGCGGGTGTCCATCTCAGGAGAAGAAAAGTGTGGGGTTCCGTTCACAGACCTGGTGGACGCCGCCAAGTGTGTGGTGAAGGCTCTGTTCATCAGAGAGAAGTACATGAGTCTGTCCCTGCAGAACTTCAGCAGAACCACCCTTTCCTTTCTATCTCACCTTCgtcttgtgtgtgtgttcgtgtcaGATGTGTCCGTTCACCCACCGGTGTCCAAAACACACCCGTACGAGGAGCAGAACCTGCCGTCTGATCTAGGATACAGCTGCGCGATGGTGGACGGAGTTTTCCACGTCTACACCACACAAAACCCTAAGGACAAgagcACTGAGCTGGACCTGCCGTATCCGGACCTGCAGGAATACATCGCAGACATGAACGTGATGATGGCGCTCATCATCAACGGCCCCGTGAAGTCGTTCTGCTATCGACGGCTCCAGTATCTGAGCTCCAAATTTCAGATGCACGTCCTGCTGAACGAGATGAAGGAGCTGGCGGCGCAGAAGAAGGTGCCGCACCGAGACTTCTACAACATCCGCAAGGtggacacacacattcacgccTCGTCCTGCATGAACCAGAAGCATCTGCTGCGCTTCATCAAACGCGCCATGAAGAAATACCCGGACGAGATCGTGCACATAGAGAACGGCAGAGGACAGACGCTGATGGACGTGTTCGAGAACATGAACCTGACGGCGTACGACCTGAGCGTCGACACACTCGACATGCACGCGGACAGAAACACCTTCCACCGTTTCGACAAGTTTAACTCCAAATACAACCCCATCGGCGAGTCGATCCTCCGAGAGATCTTCATCAAGACCGACAACCACATACACGGGAAATACTTCGGACACATCGTCAAGGAAGTGATGTCAGACCTGGAGGAGAGTAAATATCAGAACGCTGAGCTGCGTCTGTCGGTGTACGGCAGGTCTATGGACGAGTGGGATAAACTCGCAAAGTGGGCCGTCACACACTCGGTGTATTCAGACAACGTGCGCTGGCTCGTGCAGATCCCACGACTCttTGATGTTTACCGCACAAAGAAGCAGCTGAGTAACTTTCAGCAGATGCTGGAGAACATCTTCCTGCCGCTGTTTGAGGTCACCATCAATCCCAGCAGCCACCCGCAGCTACACCTCTTTTTGCAGCACGTGGTGGGTTTCGACAGCGTTGACGATGAGTCCAAACCGGAGCATCACATCTTCAACCTGGACAGTCCGTCTCCGGCGCGCTGGTGTGACGACGATAACCCGCCGTACTCGTACTATCTCTACTACATGTATGCTAACATGACCGTCCTCAACCACCTGCGCAGGAGGCGGGGCTTCCATACCTTCGTTCTGCGACCTCACTGCGGGGAGGCGGGGCCTATTCATCACCTCGTGTCTGGATTCATGCTGTCAGAAAACATCTCACACGGACTGCTGCTCAGGAAGgctCCGGTGCTGCAGTATCTGTACTATCTGGCTCAGGTGGGAATCGCCATGTCTCCTCTCAGCAACAACAGTCTGTTCCTGAGTTATCATCGTAACCCGCTGCCCGAATATCTATCCCGCGGCCTGATGGTGTCGCTGTCCACCGATGACCCGCTGCAGTTCCACTTCACTAAGgagccGCTGATGGAGGAGTACAGTATCGCCACTCAGGTCTGGAAGCTGAGCTCCTGTGACATGTGTGAACTGGCCAGAAACAGTGTGTTAATGAGCGGATTCTCACacaagTCTAAGAGTCATTGGCTGGGTCCTGATTACACCAAAGAAGGGCCGATCAGTAACGACATCCGACGCACAAACGTCCCGGACATCCGCGTGGCGTATCGATACGAGACCATGTGTGAAGAGCTGCACCTCATCATACAGGCCGTCCGGACGCAAGAACTGGACAGCATCGAGGAGGAGACGCTGTGCTTCACATCCGCCCAATCAATACGCTAG
>TCONS_00040898
CATGTCGGAAGGCAGCGCATCTCCAGCGCAGCCCAGGGGCAAAGCCAAAACAGGCAAAAGAGGCAGTTTCCACAGCCGCACCAGCCCGGATGTAAATAAATCTCTCAGTCGTCGGCCATCTTGGAAATTCCCCCAAGCTGCGATTGGTCGTCAGGAGCTGCTGGCCAGGAGCCTGACGGACAGTGACATGCGCTGCGCTCCGTATGAGTTTCCTGAAGAAAGCCCCATCGAGCAACTGGAGGAGAAACGCCACCGTCTGGAGCGGCAGATCAGTCAAGATGtcaaGCTTGAGCCCGAGATTCTGGTGCGAGCCAAACAAGACTTCATGAAAGTAGATAGCACAGCCGACCTGGAGTATCTGAAGGACAGTCAGGAGGATACAGTCGACTATCCTTTTATCGAGCGAGAGACGGTGACGGAGAGAGAGTTTCAGCGGGTGTCCATCTCAGGAGAAGAAAAGTGTGGGGTTCCGTTCACAGACCTGGTGGACGCCGCCAAGTGTGTGGTGAAGGCTCTGTTCATCAGAGAGAAGTACATGAGTCTGTCCCTGCAGAACTTCAGCAGAACCACCGCTCGATGCCTGCGCGAGCTCAACGAGAGGCCGCTGGACACCAACATCTACGAGGAGCTACACGAGAGCCCCGTCGACTCCGATGTGTCCGTTCACCCACCGGTGTCCAAAACACACCCGTACGAGGAGCAGAACCTGCCGTCTGATCTAGGATACAGCTGCGCGATGGTGGACGGAGTTTTCCACGTCTACACCACACAAAACCCTAAGGACAAcACTGAGCTGGACCTGCCGTATCCGGACCTGCAGGAATACATCGCAGACATGAACGTGATGATGGCGCTCATCATCAACGGCCCCGTGAAGTCGTTCTGCTATCGACGGCTCCAGTATCTGAGCTCCAAATTTCAGATGCACGTCCTGCTGAACGAGATGAAGGAGCTGGCGGCGCAGAAGAAGGTGCCGCACCGAGACTTCTACAACATCCGCAAGGtggacacacacattcacgccTCGTCCTGCATGAACCAGAAGCATCTGCTGCGCTTCATCAAACGCGCCATGAAGAAATACCCGGACGAGATCGTGCACATAGAGAACGGCAGAGGACAGACGCTGATGGACGTGTTCGAGAACATGAACCTGACGGCGTACGACCTGAGCGTCGACACACTCGACATGCACGCGGACAGAAACACCTTCCACCGTTTCGACAAGTTTAACTCCAAATACAACCCCATCGGCGAGTCGATCCTCCGAGAGATCTTCATCAAGACCGACAACCACATACACGGGAAATACTTCGGACACATCGTCAAGGAAGTGATGTCAGACCTGGAGGAGAGTAAATATCAGAACGCTGAGCTGCGTCTGTCGGTGTACGGCAGGTCTATGGACGAGTGGGATAAACTCGCAAAGTGGGCCGTCACACACTCGGTGTATTCAGACAACGTGCGCTGGCTCGTGCAGATCCCACGACTCttTGATGTTTACCGCACAAAGAAGCAGCTGAGTAACTTTCAGCAGATGCTGGAGAACATCTTCCTGCCGCTGTTTGAGGTCACCATCAATCCCAGCAGCCACCCGCAGCTACACCTCTTTTTGCAGCACGTGGTGGGTTTCGACAGCGTTGACGATGAGTCCAAACCGGAGCATCACATCTTCAACCTGGACAGTCCGTCTCCGGCGCGCTGGTGTGACGACGATAACCCGCCGTACTCGTACTATCTCTACTACATGTATGCTAACATGACCGTCCTCAACCACCTGCGCAGGAGGCGGGGCTTCCATACCTTCGTTCTGCGACCTCACTGCGGGGAGGCGGGGCCTATTCATCACCTCGTGTCTGGATTCATGCTGTCAGAAAACATCTCACACGGACTGCTGCTCAGGAAGgctCCGGTGCTGCAGTATCTGTACTATCTGGCTCAGGTGGGAATCGCCATGTCTCCTCTCAGCAACAACAGTCTGTTCCTGAGTTATCATCGTAACCCGCTGCCCGAATATCTATCCCGCGGCCTGATGGTGTCGCTGTCCACCGATGACCCGCTGCAGTTCCACTTCACTAAGGAGTACAGTATCGCCACTCAGGTCTGGAAGCTGAGCTCCTGTGACATGTGTGAACTGGCCAGAAACAGTGTGTTAATGAGCGGATTCTCACacaagTCTAAGAGTCATTGGCTGGGTCCTGATTACACCAAAGAAGGGCCGATCAGTAACGACATCCGACGCACAAACGTCCCGGACATCCGCGTGGCGTATCGATACGAGACCATGTGTGAAGAGCTGCACCTCATCATACAGGCCGTCCGGACGCAAGAACTGGACAGCATCGAGGAGGAGACGCTGTGCTTCACATCCGCCCAATCAATACGCTAG

Function

symbol description
ampd2a Predicted to enable AMP deaminase activity. Predicted to be involved in AMP metabolic process and IMP biosynthetic process. Predicted to act upstream of or within IMP salvage. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 63 and pontocerebellar hypoplasia type 9. Orthologous to human AMPD2 (adenosine monophosphate deaminase 2).

GO:

id name namespace
GO:0046033 AMP metabolic process biological_process
GO:0006188 IMP biosynthetic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0032264 IMP salvage biological_process
GO:0005829 cytosol cellular_component
GO:0003876 AMP deaminase activity molecular_function
GO:0019239 deaminase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-4 Predicted to enable AMP deaminase activity. Predicted to be involved in AMP metabolic process and IMP biosynthetic process. Predicted to act upstream of or within IMP salvage. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 63 and pontocerebellar hypoplasia type 9. Orthologous to human AMPD2 (adenosine monophosphate deaminase 2).

Ensembl:

ensembl_id ENSDARG00000104491

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040897 False 2310 mRNA 0.54 18 1205787 1237003
TCONS_00040898 True 2389 mRNA 0.55 18 1205787 1245226

Neighbor

gene id symbol gene type direction distance location
XLOC_020687 NA coding downstream 23308 1182084 ~ 1182479 (-)
XLOC_020686 NA coding downstream 37496 1156430 ~ 1168291 (-)
XLOC_020685 si:ch1073-15f12.3 coding downstream 126014 1073413 ~ 1079773 (-)
XLOC_020684 NA coding downstream 182256 1018345 ~ 1023531 (-)
XLOC_020683 cacna1sa coding downstream 237303 912450 ~ 968484 (-)
XLOC_020690 NA coding upstream 15724 1260950 ~ 1269440 (-)
XLOC_020691 NA coding upstream 21765 1266991 ~ 1290856 (-)
XLOC_020692 NA coding upstream 70502 1315728 ~ 1316773 (-)
XLOC_020693 BX322657.4 coding upstream 75765 1320991 ~ 1359856 (-)
XLOC_020694 NA coding upstream 118114 1363340 ~ 1365341 (-)
XLOC_020676 NA non-coding downstream 444901 739300 ~ 760886 (-)
XLOC_020675 NA non-coding downstream 470543 733244 ~ 735244 (-)
XLOC_020695 NA non-coding upstream 195452 1440678 ~ 1457344 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00013993 NA coding CM030125.1 CM030125.1 48939062 ~ 48956865 (+)