c2cd4a (LOC106561196)


Basic Information

Item Value
gene id c2cd4a
gene name LOC106561196
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 72833292 ~ 72877678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570993.2
CAGTCAGTCGCTTACAGAGGAGCTGGTCTTAACAAGAGAGATTCTGAGCCTGCTACTTAGAGACTTTTACTACTACAATCGTTATCTATCTCACAAGCCGGTCTGTAAGGACACAGTGTTGGATTTACTGACATCTCATTTACACAAGTTACCAAGCCCTATCAGAGAACTCATGTGGGTGGTGGAGAAGATCCGTGTGTCCGTGGAGAGAACCAACCTGCCTCTCCCCTCAACGGAATACAGCTTCAGGATCGGAGATATGTTTGGAGAGAAAGCTGAGAAACACAAGAGACTTTCCCTGTGTCCTAATATTATCACCCCAGACACTATCCCAGAGTTTTGCATCCCTCCTAAGATCCCATCGTTCCAGGAGCCGAAAGGTACAGAGCAGAGCCGCCAGGCCCCCATCATCAGAGTGTCCCTGTGTGAATCTGAGAGGGGGAGCCCTAAGAGGGAGGCCCCAACACGAAAGCTTATCAGCCCACACATCATCCAGGTAGAGAATGTGGATGAGAGCCCTTATGACTGTAGTGATGAGGAGACCACCAACGCAGACCCTCAAAGCCAGGCAGCACTCTCCTTGCCCCACAtggccaaagcccagacttgctATGGTTTCTGTACCCTGCTGGAGAGCCCCCACACCAGGAGGAAGGAGTCCCTGTTCCACAATGACCCTGGCTCCTGTGGCATACCGCTGCTGCTCCCCAGGAGCAGGTCCAACACTTGCCCCAGagtctccccctctacctccccttcctcctccccttcctccttcagTCTTCACACCCTGACCTCCAGACTCTCGCCCAGAGGTTATACACTCAACAGACAGGGCACACTGGACAGTGACACAACCTCCTCAGCTGAGTCCTCCCCTTTCAGCTCCCCAATGCTGAGCAGGTCCCCACCGAAGTCTTCCCTCTTCAAAACACTGAGTCATGAAAGGCTTCTTTCCAGAAACATCAGGAAGACTGTGGTGTCCAGAAACAACTCCCTGTCAACAGACGAGGGCAGCTCCACAGACAATAGTCCCAATTTCATGAGGAGGGCGTCAGATGGGCTGGTAGAAGGCCTTCCACCAAGCTTCGGTCTGGCTCCTCCTACCATCTTCCCCATAGACTTGGTTCTGCACAGGGAAAGGGTGATGAGGGAGAGCATGGTTCCTATAGGGAAGGACGGCACCCTGCGCCTCTCTGCAGAGTACTGTCCTGATAACCAGAGGCTGCGGGTGCGGCTCATCAGTGCTGAGGGACTATACACACACTCGGTGGACCCCAAGAGTATCAACTGCAGTGTCAGCCTTTCCCTGGTGCCTGGAAAGGTCCAGAAGCAGCGTAGCACAGTCATCAGGAAGAGTCGTAACCCTATCTTCAATGAGGACTTCTTCTTTGATGCCATCTCAGAGGAGGACCTCTGCCAACGCTCTCTGAGATTTAAAATTGTCAATAAAATGTCCACTATGAAAAGAGACTACATTCTGGGGGACGTTGAACTTCCGCTCACAAGCATTATCACTTTATAACTTAAATAAtttgtcttatttatttaaattgtatttattatcaCTTTTATACTGTGAGCAGAGATTTTATACTGTATCTAATAAATCCTTTATTAAAAATAT
>XM_036954980.1
TAGCTCTGGGCTGTGAAGAATACATTACAGAGAAGCAAAGAAATTACCAAGCCCTATCAGAGAACTCATGTGGGTGGTGGAGAAGATCCGTGTGTCCGTGGAGAGAACCAACCTGCCTCTCCCCTCAACGGAATACAGCTTCAGGATCGGAGATATGTTTGGAGAGAAAGCTGAGAAACACAAGAGACTTTCCCTGTGTCCTAATATTATCACCCCAGACACTATCCCAGAGTTTTGCATCCCTCCTAAGATCCCATCGTTCCAGGAGCCGAAAGGTACAGAGCAGAGCCGCCAGGCCCCCATCATCAGAGTGTCCCTGTGTGAATCTGAGAGGGGGAGCCCTAAGAGGGAGGCCCCAACACGAAAGCTTATCAGCCCACACATCATCCAGGTAGAGAATGTGGATGAGAGCCCTTATGACTGTAGTGATGAGGAGACCACCAACGCAGACCCTCAAAGCCAGGCAGCACTCTCCTTGCCCCACAtggccaaagcccagacttgctATGGTTTCTGTACCCTGCTGGAGAGCCCCCACACCAGGAGGAAGGAGTCCCTGTTCCACAATGACCCTGGCTCCTGTGGCATACCGCTGCTGCTCCCCAGGAGCAGGTCCAACACTTGCCCCAGagtctccccctctacctccccttcctcctccccttcctccttcagTCTTCACACCCTGACCTCCAGACTCTCGCCCAGAGGTTATACACTCAACAGACAGGGCACACTGGACAGTGACACAACCTCCTCAGCTGAGTCCTCCCCTTTCAGCTCCCCAATGCTGAGCAGGTCCCCACCGAAGTCTTCCCTCTTCAAAACACTGAGTCATGAAAGGCTTCTTTCCAGAAACATCAGGAAGACTGTGGTGTCCAGAAACAACTCCCTGTCAACAGACGAGGGCAGCTCCACAGACAATAGTCCCAATTTCATGAGGAGGGCGTCAGATGGGCTGGTAGAAGGCCTTCCACCAAGCTTCGGTCTGGCTCCTCCTACCATCTTCCCCATAGACTTGGTTCTGCACAGGGAAAGGGTGATGAGGGAGAGCATGGTTCCTATAGGGAAGGACGGCACCCTGCGCCTCTCTGCAGAGTACTGTCCTGATAACCAGAGGCTGCGGGTGCGGCTCATCAGTGCTGAGGGACTATACACACACTCGGTGGACCCCAAGAGTATCAACTGCAGTGTCAGCCTTTCCCTGGTGCCTGGAAAGGTCCAGAAGCAGCGTAGCACAGTCATCAGGAAGAGTCGTAACCCTATCTTCAATGAGGACTTCTTCTTTGATGCCATCTCAGAGGAGGACCTCTGCCAACGCTCTCTGAGATTTAAAATTGTCAATAAAATGTCCACTATGAAAAGAGACTACATTCTGGGGGACGTTGAACTTCCGCTCACAAGCATTATCACTTTATAACTTAAATAAtttgtcttatttatttaaattgtatttattatcaCTTTTATACTGTGAGCAGAGATTTTATACTGTATCTAATAAATCCTTTATTAAAAATAT
>TU206178
AGCTGTAGCTCTGGGCTGTGAAGAATACATTACAGAGAAGCAAAGAAAgaagaaagccgttacagaatcacccaccacaacaggaccaagcggcgtggtgacaggcagcggcagcaggagcagcgcaaggaggaatggacatgggatgatgtgttggagggcaagggttgctacacttgggaggagatcctggcgggaaaggattgcctcccatgggaacaggtggaggcagctaggagagcagaggcagccggagagaggagccggcgatacgagggaacacggctggcaaggaagcccgagagtcagccc
>TU206204
TCTTAACAAGAGAGATTCTGAGCCTGCTACTTAGAGACTTTTACTACTACAATCGTTATCTATCTCACAAGCCGGTCTGTAAGGACACAGTGTTGGATTTACTGACATCTCATTTACACAAGTTACCAAGCCCTATCAGAGAACTCATGTGGGTGGTGGAGAAGATCCGTGTGTCCGTGGAGAGAACCAACCTGCCTCTCCCCTCAACGGAATACAGCTTCAGGATCGGAGATATGTTTGGAGAGAAAGCTGAGAAACACAAGAGACTTTCCCTGTGTCCTAATATTATCACCCCAGACACTATCCCAGAGTTTTGCATCCCTCCTAAGATCCCATCGTTCCAGGAGCCGAAAGGTACAGAGCAGAGCCGCCAGGCCCCCATCATCAGAGTGTCCCTGTGTGAATCTGAGAGGGGGAGCCCTAAGAGGGAGGCCCCAACACGAAAGCTTATCAGCCCACACATCATCCAGGTAGAGAATGTGGATGAGAGCCCTTATGACTGTAGTGATGAGGAGACCACCAACGCAGACCCTCAAAGCCAGGCAGCACTCTCCTTGCCCCACAtggccaaagcccagacttgctATGGTTTCTGTACCCTGCTGGAGAGCCCCCACACCAGGAGGAAGGAGTCCCTGTTCCACAATGACCCTGGCTCCTGTGGCATACCGCTGCTGCTCCCCAGGAGCAGGTCCAACACTTGCCCCAGagtctccccctctacctccccttcctcctccccttcctccttcagTCTTCACACCCTGACCTCCAGACTCTCGCCCAGAGGTTATACACTCAACAGACAGGGCACACTGGACAGTGACA

Function

NR:

description
C2 calcium-dependent domain-containing protein 4C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570993.2 False 1627 mRNA 0.50 2 72871971 72873771
XM_036954980.1 False 1522 mRNA 0.51 2 72871971 72877673
TU206178 False 312 lncRNA 0.58 2 72833292 72877678
TU206204 True 828 TUCP 0.53 2 72872744 72873745

Neighbor

gene id symbol gene type direction distance location
LOC118937294 NA coding downstream 96322 72774064 ~ 72775649 (-)
roraa LOC106561150 coding downstream 127459 72456866 ~ 72744512 (-)
LOC118941485 NA coding downstream 562000 72300332 ~ 72309971 (-)
LOC110495618 LOC106561149 coding downstream 696524 72106006 ~ 72175447 (-)
LOC100135856 LOC100135856 coding downstream 781188 72070481 ~ 72090783 (-)
LOC110495704 nrg4 coding upstream 198347 73076020 ~ 73078379 (-)
etfa LOC100194695 coding upstream 268548 73146221 ~ 73157311 (-)
scaper LOC106561156 coding upstream 299048 73176721 ~ 73292819 (-)
LOC100653450 LOC106561160 coding upstream 446502 73324175 ~ 73328878 (-)
kti12 kti12 coding upstream 487893 73365566 ~ 73373678 (-)
G181545 NA non-coding downstream 107568 72764193 ~ 72764403 (-)
G181544 NA non-coding downstream 108294 72763470 ~ 72763677 (-)
G181529 NA non-coding downstream 114265 72757448 ~ 72757706 (-)
G181520 NA non-coding downstream 119482 72752264 ~ 72752489 (-)
G181515 NA non-coding downstream 122106 72749634 ~ 72749865 (-)
G182443 NA non-coding upstream 48052 72925725 ~ 72928284 (-)
G182487 NA non-coding upstream 109491 72987164 ~ 72989040 (-)
G182506 NA non-coding upstream 124423 73002096 ~ 73089478 (-)
G182508 NA non-coding upstream 126226 73003899 ~ 73004346 (-)
G182494 NA non-coding upstream 133805 73011478 ~ 73066724 (-)
G180716 NA other downstream 760308 72110968 ~ 72111663 (-)
G179754 NA other downstream 1396992 71474372 ~ 71474979 (-)
LOC110495479 mctp2 other downstream 1729787 71134265 ~ 71164057 (-)
G179310 mef2a other downstream 1801767 70998045 ~ 71070204 (-)
ttc23 ttc23 other downstream 1927210 70926632 ~ 70945359 (-)
G182708 NA other upstream 467277 73344950 ~ 73345847 (-)
G182882 NA other upstream 798539 73676212 ~ 73676423 (-)
G183096 NA other upstream 1115405 73993078 ~ 73993545 (-)

Expression


Co-expression Network