LOC110495666 (LOC106573503)


Basic Information

Item Value
gene id LOC110495666
gene name LOC106573503
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73056128 ~ 73069598 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571018.2
GAGCAGCGAATCACCGAGTAGATCCATAAAGAAAGATAGGGCAAGGGGAAGGGACCCCGAGATGCCGTCTCCAAAAAAGTATTGGATGTCTGAAAGAATTTAGTCCCCTCCCCTTCTCGACAGTACATATTTGAAAAGGCACATTCAAGAAGAGCTTGCACTCCAGCGCAACGTTCAGTGAAGCACAGACGCACAGTCTCTCTCCTCGGGTCTCTTTCGAAACATTTGGTGGAGCCAAACAAAAAATAAGCAGCCATGGATGCCATCAAGAAGAAGATGCAGATGCTCAAGCTCGACAAGGAGAATGCCTTGGACAGAGCTGAGGGAGCCGAGGGAGACAAGAAGGCAGCAGAGGACAAGAGCAAACAGCTCGAGGATGACTTGGTAGCTCTGCAAAAGAAACTGAAGGGAACAGAGGATGAGTTGGACAAGTACTCCGAGTCTCTTAAGGATGCCCAGGAGAAACTTGAGGTGGCTGAGAAGACAGCCACGGACgCTGAGGCCGATGTCGCTTCCCTTAACAGACGTATCCAGCTAGTTGAGGAGGAGTTGGATCGTGCTCAGGAGCGTCTGGCAACTGCCCTGACCAAGCTGGAGGAGGCTGAGAAGGCGGCTGATGAGTCCGAGAGAGGCATGAAGGTCATTGAGAACAGGGCCTCCAAGGATGAGGAGAAGATGGAGCTGCAGGATATCCAGCTGAAGGAGGCCAAGCACATCGCTGAGGAGGCTGACCGCAAATATGAGGAGGTTGCCCGTAAGCTGGTCATCATTGAGAGTGATCTGGAACGTACAGAAGAGCGCGCCGAGCTTTCAGAAGGCAAATGCTCTGAGCTTGAGGAAGAGTTGAAAACTGTGACCAACAACCTGAAGTCACTGGAGGCCCAGGCTGAGAAGTACTCACAGAAGGAGGACAAGTACGAGGAGGAGATCAAGGTCCTCACTGACAAGCTGAAGGAGGCTGAGACTCGTGCTGAGTTCGCTGAGAGATCAGTAGCCAAACTTGAGAAGACCATCGACGACTTGGAAGATGAGTTGTATGCCCAGAAACTGAAGTACAAGGCCATCAGCGAGGAGCTGGACAACGCCCTCAACGACATGACTTCCATATAAATTGTTTACACCTCATCAAAGACGCCTCCCGCCAGCTGAGCAGCATCGCTCTGCTCTCTCCCGGCCTTTCTTCCATTTCCCAACCCTTCTGTCCATGCTTTCCTTTACTCCCCATGTTCTCATCCTGTCAGTGTTGTATCCCATCTCTTGTATAGAACCTCTGAATCTTTCTGTGTTGTATACAAATAAACCTTCTTCCTTCTATGTAA
>XM_021571037.2
GAGCAGCGAATCACCGAGTAGATCCATAAAGAAAGATAGGGCAAGGGGAAGGGACCCCGAGATGCCGTCTCCAAAAAAGTATTGGATGTCTGAAAGAATTTAGTCCCCTCCCCTTCTCGACAGTACATATTTGAAAAGGCACATTCAAGAAGAGCTTGCACTCCAGCGCAACGTTCAGTGAAGCACAGACGCACAGTCTCTCTCCTCGGGTCTCTTTCGAAACATTTGGTGGAGCCAAACAAAAAATAAGCAGCCATGGATGCCATCAAGAAGAAGATGCAGATGCTCAAGCTCGACAAGGAGAATGCCTTGGACAGAGCTGAGGGAGCCGAGGGAGACAAGAAGGCAGCAGAGGACAAGAGCAAACAGCTCGAGGATGACTTGGTAGCTCTGCAAAAGAAACTGAAGGGAACAGAGGATGAGTTGGACAAGTACTCCGAGTCTCTTAAGGATGCCCAGGAGAAACTTGAGGTGGCTGAGAAGACAGCCACGGACgCTGAGGCCGATGTCGCTTCCCTTAACAGACGTATCCAGCTAGTTGAGGAGGAGTTGGATCGTGCTCAGGAGCGTCTGGCAACTGCCCTGACCAAGCTGGAGGAGGCTGAGAAGGCGGCTGATGAGTCCGAGAGAGGCATGAAGGTCATTGAGAACAGGGCCTCCAAGGATGAGGAGAAGATGGAGCTGCAGGATATCCAGCTGAAGGAGGCCAAGCACATCGCTGAGGAGGCTGACCGCAAATATGAGGAGGTTGCCCGTAAGCTGGTCATCATTGAGAGTGATCTGGAACGTACAGAAGAGCGCGCCGAGCTTTCAGAAGGCAAATGCTCTGAGCTTGAGGAAGAGTTGAAAACTGTGACCAACAACCTGAAGTCACTGGAGGCCCAGGCTGAGAAGTACTCACAGAAGGAGGACAAGTACGAGGAGGAGATCAAGGTCCTCACTGACAAGCTGAAGGAGGCTGAGACTCGTGCTGAGTTCGCTGAGAGATCAGTAGCCAAACTTGAGAAGACCATCGACGACTTGGAAGAGAAACTGGCACATGCTAAAGAAGAGAACCTCGATATGCACCAGATGCTGGACCAGACTCTAATGGAACTAAATAACATGTGAAAGCCTGGTTTACACACTGGTTTGGGCTTTCTGTATTTTTACCTCGCATGCCATGAATCCTCCTTCCATTCCATGCCCATGTTGAGGAACACAAACCGATGCTTTTCCTTTTGCACCATCCTGCTTTCAGTGGAACTCAACAAGGAAGGTACAACATTTCCTTAATGAAACCCAAAATGAGAAACACTTCTATTTTTGCCAGCTGATTTTTAATAATGATGTCAGCATTTTGTAATCATTGAGTTTAGTTTATTTTTGACAAGTTATCAGGTGAAATTGTGTGCCATTTGCTACGAAGGTTATTTTTATCTGCATTTGATAGATTGAAGGGGATGAATCTGGCACATACCCATTTCACACTGGTTATGCAAATACCTTACATTTCAATCAAAGACAAAGTGGAAAAATGTTGCACTTAATTCAACTTCAACGTACGTACAGAATTAGTGTAGGAGAAcacatgattttagtttttgaaGACTTCTGTATTTGTTAAAGTTTCCTCAAGTAAGTATACATTGGACAAGCCTGTCCACATGCATATTGGTGCTGTGTTAGGGGGTTGTTCCACCAATTTGGTGCCTTTTTGAGAAGTGTTTCTTGATTTCACCTAATTTAAACATTCTGTCATCAAGAGCACATTCATGTTCAacgttttcccatctcaagacggggaaaaaatactatagtaagtCCCAAATAAAGTAACGGTTGTtcagactgtaacagggttgttcagactgtaacagggttgGCGACATAATCTTAAATCatccataaatccccttgtgacataGGGAATAGAAGTTTGTGCAACAGGGAGTGGTAATTGAAGCCTGTATCTATGGGTAACAGAGTTGACGTGTTATGCTCGACCCACTCTGTTTTCCGATTTGACTATTAGATAAATTTATCAAAAGAAACATTGTTTTCGAAAGGAATAGTTTCAAAGAAACAATGATGGGGAAACTGTAAAGACATTTTAGGGTTAAATAGGGTCAAATCTTCCTAGAGgattttggcactttagcaagtatttattctataaaaaaaatctgacttattgaattctccatgtttATATTAAATGGCACTTTGAATATAACATGCTTTTCAAATTCagtattggtgcacaatttctactttaTATCAGAGGGATGCAAAAAGCACTTCGTGGAACAACCCTAGGACATTTTAGGAAAGGCcaaaaattaatttaaaaaaaaaaaatgttttgcctaTATCAAACCGTGGCTAGAAAGAGATCAACTTATACTTCTGGAGTgtatttgtttttcttttcatcCTTAAACTCTTTACAAAATCTCTATGGAAACATTCTTGCTAAATGCATTCCTGTTTTTGTTTAAACCATGGTTCAAAACAACAATTTTGTATTGTCTAGAAATATGATTTGAATCATGTGGGTCTGCCTCACTTGTTTTACTATTGTTTTATTAAATTAGATGTTTTAAATGTATATCTTCtgacatgtaaaaaaaataaatagtgAATATAAATAAAA
>XM_021571054.2
TGAAAAGGCACATTCAAGAAGAGCTTGCACTCCAGCGCAACGTTCAGTGAAGCACAGACGCACAGTCTCTCTCCTCGGGTCTCTTTCGAAACATTTGGTGGAGCCAAACAAAAAATAAGCAGCCATGGATGCCATCAAGAAGAAGATGCAGATGCTCAAGCTCGACAAGGAGAATGCCTTGGACAGAGCTGAGGGAGCCGAGGGAGACAAGAAGGCAGCAGAGGACAAGAGCAAACAGttagaggatgaaaTAAGTGAGTTGGAAAAGAAATTACGGATCACCGAAGATGAACGTGATAAAGTGCTTGATGAGTTCCAAGCCGCCGAGGAAAAGTTTCTGAACGCCGAGGAGGTGGCCACCAAGgCTGAGGCCGATGTCGCTTCCCTTAACAGACGTATCCAGCTAGTTGAGGAGGAGTTGGATCGTGCTCAGGAGCGTCTGGCAACTGCCCTGACCAAGCTGGAGGAGGCTGAGAAGGCGGCTGATGAGTCCGAGAGAGGCATGAAGGTCATTGAGAACAGGGCCTCCAAGGATGAGGAGAAGATGGAGCTGCAGGATATCCAGCTGAAGGAGGCCAAGCACATCGCTGAGGAGGCTGACCGCAAATATGAGGAGGTTGCCCGTAAGCTGGTCATCATTGAGAGTGATCTGGAACGTACAGAAGAGCGCGCCGAGCTTTCAGAAGGCAAATGCTCTGAGCTTGAGGAAGAGTTGAAAACTGTGACCAACAACCTGAAGTCACTGGAGGCCCAGGCTGAGAAGTACTCACAGAAGGAGGACAAGTACGAGGAGGAGATCAAGGTCCTCACTGACAAGCTGAAGGAGGCTGAGACTCGTGCTGAGTTCGCTGAGAGATCAGTAGCCAAACTTGAGAAGACCATCGACGACTTGGAAGATGAGTTGTATGCCCAGAAACTGAAGTACAAGGCCATCAGCGAGGAGCTGGACAACGCCCTCAACGACATGACTTCCATGTAA
>XM_021571046.2
TGAAAAGGCACATTCAAGAAGAGCTTGCACTCCAGCGCAACGTTCAGTGAAGCACAGACGCACAGTCTCTCTCCTCGGGTCTCTTTCGAAACATTTGGTGGAGCCAAACAAAAAATAAGCAGCCATGGATGCCATCAAGAAGAAGATGCAGATGCTCAAGCTCGACAAGGAGAATGCCTTGGACAGAGCTGAGGGAGCCGAGGGAGACAAGAAGGCAGCAGAGGACAAGAGCAAACAGttagaggatgaaaTAAGTGAGTTGGAAAAGAAATTACGGATCACCGAAGATGAACGTGATAAAGTGCTTGATGAGTTCCAAGCCGCCGAGGAAAAGTTTCTGAACGCCGAGGAGGTGGCCACCAAGgCTGAGGCCGATGTCGCTTCCCTTAACAGACGTATCCAGCTAGTTGAGGAGGAGTTGGATCGTGCTCAGGAGCGTCTGGCAACTGCCCTGACCAAGCTGGAGGAGGCTGAGAAGGCGGCTGATGAGTCCGAGAGAGGCATGAAGGTCATTGAGAACAGGGCCTCCAAGGATGAGGAGAAGATGGAGCTGCAGGATATCCAGCTGAAGGAGGCCAAGCACATCGCTGAGGAGGCTGACCGCAAATATGAGGAGGTTGCCCGTAAGCTGGTCATCATTGAGAGTGATCTGGAACGTACAGAAGAGCGCGCCGAGCTTTCAGAAGGCAAATGCTCTGAGCTTGAGGAAGAGTTGAAAACTGTGACCAACAACCTGAAGTCACTGGAGGCCCAGGCTGAGAAGTACTCACAGAAGGAGGACAAGTACGAGGAGGAGATCAAGGTCCTCACTGACAAGCTGAAGGAGGCTGAGACTCGTGCTGAGTTCGCTGAGAGATCAGTAGCCAAACTTGAGAAGACCATCGACGACTTGGAAGATGAGTTGTATGCCCAGAAACTGAAGTACAAGGCCATCAGCGAGGAGCTGGACAACGCCCTCAACGACATGACTTCCATATAAATTGTTTACACCTCATCAAAGACGCCTCCCGCCAGCTGAGCAGCATCGCTCTGCTCTCTCCCGGCCTTTCTTCCATTTCCCAACCCTTCTGTCCATGCTTTCCTTTACTCCCCATGTTCTCATCCTGTCAGTGTTGTATCCCATCTCTTGTATAGAACCTCTGAATCTTTCTGTGTTGTATACAAATAAACCTTCTTCCTTCTATGTAA
>XM_021571063.2
TGAAAAGGCACATTCAAGAAGAGCTTGCACTCCAGCGCAACGTTCAGTGAAGCACAGACGCACAGTCTCTCTCCTCGGGTCTCTTTCGAAACATTTGGTGGAGCCAAACAAAAAATAAGCAGCCATGGATGCCATCAAGAAGAAGATGCAGATGCTCAAGCTCGACAAGGAGAATGCCTTGGACAGAGCTGAGGGAGCCGAGGGAGACAAGAAGGCAGCAGAGGACAAGAGCAAACAGttagaggatgaaaTAAGTGAGTTGGAAAAGAAATTACGGATCACCGAAGATGAACGTGATAAAGTGCTTGATGAGTTCCAAGCCGCCGAGGAAAAGTTTCTGAACGCCGAGGAGGTGGCCACCAAGgCTGAGGCCGATGTCGCTTCCCTTAACAGACGTATCCAGCTAGTTGAGGAGGAGTTGGATCGTGCTCAGGAGCGTCTGGCAACTGCCCTGACCAAGCTGGAGGAGGCTGAGAAGGCGGCTGATGAGTCCGAGAGAGGCATGAAGGTCATTGAGAACAGGGCCTCCAAGGATGAGGAGAAGATGGAGCTGCAGGATATCCAGCTGAAGGAGGCCAAGCACATCGCTGAGGAGGCTGACCGCAAATATGAGGAGGTTGCCCGTAAGCTGGTCATCATTGAGAGTGATCTGGAACGTACAGAAGAGCGCGCCGAGCTTTCAGAAGGCAAATGCTCTGAGCTTGAGGAAGAGTTGAAAACTGTGACCAACAACCTGAAGTCACTGGAGGCCCAGGCTGAGAAGTACTCACAGAAGGAGGACAAGTACGAGGAGGAGATCAAGGTCCTCACTGACAAGCTGAAGGAGGCTGAGACTCGTGCTGAGTTCGCTGAGAGATCAGTAGCCAAACTTGAGAAGACCATCGACGACTTGGAAGAGAAACTGGCACATGCTAAAGAAGAGAACCTCGATATGCACCAGATGCTGGACCAGACTCTAATGGAACTAAATAACATGTGAAAGCCTGGTTTACACACTGGTTTGGGCTTTCTGTATTTTTACCTCGCATGCCATGAATCCTCCTTCCATTCCATGCCCATGTTGAGGAACACAAACCGATGCTTTTCCTTTTGCACCATCCTGCTTTCAGTGGAACTCAACAAGGAAGGTACAACATTTCCTTAATGAAACCCAAAATGAGAAACACTTCTATTTTTGCCAGCTGATTTTTAATAATGATGTCAGCATTTTGTAATCATTGAGTTTAGTTTATTTTTGACAAGTTATCAGGTGAAATTGTGTGCCATTTGCTACGAAGGTTATTTTTATCTGCATTTGATAGATTGAAGGGGATGAATCTGGCACATACCCATTTCACACTGGTTATGCAAATACCTTACATTTCAATCAAAGACAAAGTGGAAAAATGTTGCACTTAATTCAACTTCAACGTACGTACAGAATTAGTGTAGGAGAAcacatgattttagtttttgaaGACTTCTGTATTTGTTAAAGTTTCCTCAAGTAAGTATACATTGGACAAGCCTGTCCACATGCATATTGGTGCTGTGTTAGGGGGTTGTTCCACCAATTTGGTGCCTTTTTGAGAAGTGTTTCTTGATTTCACCTAATTTAAACATTCTGTCATCAAGAGCACATTCATGTTCAacgttttcccatctcaagacggggaaaaaatactatagtaagtCCCAAATAAAGTAACGGTTGTtcagactgtaacagggttgttcagactgtaacagggttgGCGACATAATCTTAAATCatccataaatccccttgtgacataGGGAATAGAAGTTTGTGCAACAGGGAGTGGTAATTGAAGCCTGTATCTATGGGTAACAGAGTTGACGTGTTATGCTCGACCCACTCTGTTTTCCGATTTGACTATTAGATAAATTTATCAAAAGAAACATTGTTTTCGAAAGGAATAGTTTCAAAGAAACAATGATGGGGAAACTGTAAAGACATTTTAGGGTTAAATAGGGTCAAATCTTCCTAGAGgattttggcactttagcaagtatttattctataaaaaaaatctgacttattgaattctccatgtttATATTAAATGGCACTTTGAATATAACATGCTTTTCAAATTCagtattggtgcacaatttctactttaTATCAGAGGGATGCAAAAAGCACTTCGTGGAACAACCCTAGGACATTTTAGGAAAGGCcaaaaattaatttaaaaaaaaaaaatgttttgcctaTATCAAACCGTGGCTAGAAAGAGATCAACTTATACTTCTGGAGTgtatttgtttttcttttcatcCTTAAACTCTTTACAAAATCTCTATGGAAACATTCTTGCTAAATGCATTCCTGTTTTTGTTTAAACCATGGTTCAAAACAACAATTTTGTATTGTCTAGAAATATGATTTGAATCATGTGGGTCTGCCTCACTTGTTTTACTATTGTTTTATTAAATTAGATGTTTTAAATGTATATCTTCtgacatgtaaaaaaaataaatagtgAATATAAATAAAA

Function

NR:

description
tropomyosin alpha-1 chain-like isoform X6

GO: NA

KEGG:

id description
K10373 TPM1; tropomyosin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571018.2 False 1319 mRNA 0.51 10 73056128 73066027
XM_021571037.2 False 2635 mRNA 0.41 9 73056128 73069598
XM_021571054.2 False 979 mRNA 0.52 9 73056259 73064636
XM_021571046.2 False 1188 mRNA 0.51 10 73056259 73066027
XM_021571063.2 True 2504 mRNA 0.41 9 73056259 73069598

Neighbor

gene id symbol gene type direction distance location
tln2b LOC106561152 coding upstream 25903 72888317 ~ 73030225 (+)
LOC110495632 LOC106561195 coding upstream 712772 72336802 ~ 72343356 (+)
LOC110533853 LOC106561194 coding upstream 802319 72250884 ~ 72253809 (+)
LOC110495604 LOC106573778 coding upstream 990929 72059717 ~ 72065199 (+)
LOC110495562 LOC106561144 coding upstream 1047865 71995694 ~ 72008263 (+)
lactb LOC106561153 coding downstream 2819 73072417 ~ 73075269 (+)
tmem266 LOC106561154 coding downstream 14691 73084289 ~ 73146123 (+)
isl2a LOC106561155 coding downstream 94161 73163759 ~ 73169203 (+)
LOC110495782 LOC106561158 coding downstream 229982 73299580 ~ 73316950 (+)
si:dkey-24l11.2 LOC106561161 coding downstream 282202 73351800 ~ 73361169 (+)
G181706 NA non-coding upstream 120696 72887273 ~ 72935432 (+)
G181601 NA non-coding upstream 248953 72806900 ~ 72807175 (+)
G181600 NA non-coding upstream 249428 72806371 ~ 72806700 (+)
G181040 NA non-coding upstream 592916 72456880 ~ 72463212 (+)
G181013 NA non-coding upstream 614246 72433857 ~ 72441882 (+)
G181833 NA non-coding downstream 24355 73093953 ~ 73095214 (+)
G181841 NA non-coding downstream 41903 73111501 ~ 73157853 (+)
G181854 NA non-coding downstream 62561 73132159 ~ 73132598 (+)
G181859 NA non-coding downstream 67189 73136787 ~ 73407337 (+)
G181887 NA non-coding downstream 123749 73193347 ~ 73194365 (+)
igf1ra igf1r other upstream 2248224 70794530 ~ 70905277 (+)
G177812 NA other upstream 2942688 70107286 ~ 70113440 (+)
G177067 NA other upstream 3598695 69456558 ~ 69457433 (+)
G181995 NA other downstream 271782 73341380 ~ 73342277 (+)
LOC110501876 LOC106561170 other downstream 507167 73456669 ~ 73580075 (+)
G182139 LOC106561173 other downstream 537294 73606892 ~ 73610237 (+)
G182144 NA other downstream 552938 73622536 ~ 73624518 (+)
G183361 NA other downstream 1460051 74529649 ~ 74535026 (+)

Expression


Co-expression Network