etfa (LOC100194695)


Basic Information

Item Value
gene id etfa
gene name LOC100194695
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73146221 ~ 73157311 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571138.2
AACGGAAGTGATTTTAGTCCATCCCACAGTTTTGTCTCGCGAGAACATTCTACAGCTGTCAGAGTTCGTTCGAAGTAAAGTAAAGTAGCATTTGGCAACATCGAATAGCAGGGTCCAAGATGCTTAGAGCTGTCAACAAAACACATTTCAAACAGTTGTCTGGTCTCCTCCAGAGGTTTCAAAGCACCTTGGTGGTGGCAGAACACAACAATGACAAGCTGACTCCCATTACGCTGAATGCTATCACTGCAGCCAAGAAACTGGGAGGAGATGTGTCCTGTTTGGTTGCTGGAACAGACTGTACAAAGGTTGCACAGGAAATCAGCAAAGTCCTGGGTGTGAAGACAGTTTTGATTGCTCAAAATGATGCTTACAAAGGATCTCTGCCAGAAGCGTTGACTCCACTTATCCTGGCAACCCAGAAGCAGTTCAACTTCACCCATATTTGTGCTGGAGCATCTGCCTTTGGGAAAAACCTGCTGCCCAGACTGGCTGCCAAGTTGGATGTTGCTCCTATTTCAGACATCATCGAGATCAAATCCCCTGACACCTTTGTCAGAACCATCTATGCTGGAAATGCTCTCAGCACTGTCAAGTCTAATGACAATGTCAAGGTTTTCACTGTCAGAGGGACCTCCTTTGAGCCCGCTGAGGTGGAGGGAGGCAGTGCTACATCAGAGGAAGTTGCTGCGTCCACTCCTGATGGGATGTCCGAGTGGCTGGAAGCGTCCTTGACCAAGAGTGACCGTCCAGAGCTGACCAGTGCAAAGGTTGTGGTGTCCGGAGGAAGGGGCCTGAAGAGTGGAGACAACTTCAAGCTGCTGTATGACCTTGCTGACCAAATGAATGCCGCAGTTGGTGCTTCCAGAGCTGCTGTGGATGCTGGATATGTCCCCAATGACATGCAGGTTGGACAGACTGGCAAGATCGTGGCCCCCGAGTTGTACATCGCTGTTGGCATCTCTGGAGCTATTCAGCATCTGGCTGGGATGAAGGACAGCAAGACTATTGTGGCCATCAACAAGGACCCAGAGGCTCCCATCTTCCAGGTGGCTGACTATGGTCTGGTGGCTGATCTGTTCAAGGCTGTCCCTGAGATGACTGCAGCATTGAACAAGTGAGCCAAAATTCAGCTCAGCAGCCATACCTTCACTACCTGGGTACCAAGACCACATGGTTACAGCTCTCCTACAATCTCTGCCTTAACATTTCTGGAGCTACTTTTCTGGGAACACTAATAATGTTATCATCCTCCTTCCTAAATGGAAACAGAACAACACTGTTTATAAACCGGACATCTGTTTTTATGGACCTAGCTATGATAATGCCACAAATAATGTTTGTGATATTTTTGTTCCCTGTTAATGCATATTTTGTAATATGTATTTAACGTAGCGTCACAATAAAGGCAATCTTCAGGAAGTCTAAA

Function

NR:

description
electron transfer flavoprotein subunit alpha, mitochondrial-like

GO:

id name namespace
GO:0009887 animal organ morphogenesis biological_process
GO:0070584 mitochondrion morphogenesis biological_process
GO:0031998 regulation of fatty acid beta-oxidation biological_process
GO:0009055 electron transfer activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K03522 fixB, etfA; electron transfer flavoprotein alpha subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571138.2 True 1429 mRNA 0.47 12 73146221 73157311

Neighbor

gene id symbol gene type direction distance location
LOC110495704 nrg4 coding downstream 68112 73076020 ~ 73078379 (-)
c2cd4a LOC106561196 coding downstream 268548 72833292 ~ 72877678 (-)
LOC118937294 NA coding downstream 370572 72774064 ~ 72775649 (-)
roraa LOC106561150 coding downstream 401709 72456866 ~ 72744512 (-)
LOC118941485 NA coding downstream 836250 72300332 ~ 72309971 (-)
scaper LOC106561156 coding upstream 19410 73176721 ~ 73292819 (-)
LOC100653450 LOC106561160 coding upstream 166864 73324175 ~ 73328878 (-)
kti12 kti12 coding upstream 208255 73365566 ~ 73373678 (-)
znf592 znf592 coding upstream 220864 73378175 ~ 73385597 (-)
alpk3a LOC106561166 coding upstream 261304 73418615 ~ 73440795 (-)
G182553 NA non-coding downstream 32341 73107475 ~ 73113880 (-)
G182554 NA non-coding downstream 32776 73107133 ~ 73113445 (-)
G182552 NA non-coding downstream 32880 73107045 ~ 73113341 (-)
G182506 NA non-coding downstream 56743 73002096 ~ 73089478 (-)
G182494 NA non-coding downstream 79497 73011478 ~ 73066724 (-)
G182648 NA non-coding upstream 75891 73233202 ~ 73265698 (-)
G182734 LOC106561167 non-coding upstream 251455 73408766 ~ 73410961 (-)
G182820 NA non-coding upstream 404604 73561915 ~ 73562219 (-)
G182821 NA non-coding upstream 405621 73562932 ~ 73563178 (-)
G182824 NA non-coding upstream 407971 73565282 ~ 73565492 (-)
G180716 NA other downstream 1034558 72110968 ~ 72111663 (-)
G179754 NA other downstream 1671242 71474372 ~ 71474979 (-)
G182708 NA other upstream 187639 73344950 ~ 73345847 (-)
G182882 NA other upstream 518901 73676212 ~ 73676423 (-)
G183096 NA other upstream 835767 73993078 ~ 73993545 (-)
G183538 NA other upstream 949572 74106883 ~ 74110791 (-)
G184006 LOC106561202 other upstream 1573561 74730872 ~ 74732637 (-)

Expression


Co-expression Network