LOC110495782 (LOC106561158)


Basic Information

Item Value
gene id LOC110495782
gene name LOC106561158
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73299580 ~ 73316950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571221.2
cacattaaaataaaataagcatTTTGACTTTGCTGAGGTGGATGGCACACCAGGCCTTAACCTAACCAAGTTTCTCACATTTACACACCCATCTGAAGTGGATCACATGACTGTGAGACATTTCTACACAGAACAAGCTGTTTACGTGTGTATTTAGATGAGCAAGGATGCAGAATGAAACGTTTGATGCGGTTAATATTTTCCTGTTCATTTTTCTTTTAGGTTTTTGCCCATGAAAATGTGTTGAGTGAATATGATACAGCTAAAGATGAGCTCCAGTCTAAGTGAATTTATTGGAGATGTTCGAACTAATGGGAGTGGATTTCATCAGTAATGTGGGATATGAGGCTCTCATCCAGAGACTCTGTGAGGGTCGACGGATGTGCAAAGATATGGAGGAGCTCTTGAAGATGAGGGCATCTGCTGAAGAGAGATATGGCAAAGAGTTGGTGATGATTGCACGCAAGGCAGGGGGACTCTGTGAGATCAACACTTTGAAAGCATCCCTTGACCAACTCAAAGTCCAAATTGAGAACATTGGGAACCTACACATACAACTGTCTGGGGTGTTAAAGGAAGAGGTCAAGAGGATGGAACAGTTCAGGGAGCGACAGAAAGAGCAGAGAAAAAAGTTTGAAGGCATCATGGACAAGGTTCAGAAGATAAAGGTGTCTTTATACAAGAAAACAATGGAGTCTAAGAGAACTTATGACCAGAGGTGCAGAGAAGCGGATGAGGCCGAGCAAGTTGCTGAGAGGATGATCAGTGTAGCTACCACCACACCCAAGCAGGCTGAGAGGGTGCACAACAAGTCTAAGCAGTGCAGGGAGGCAGCAGCAGAGGCAGAAAAACAATACATGTCAAATATTGATCAGCTAGACAAGATTCGTCAAGAATGGGAAACTACACACGAGAGTACTTGTGAGGTCTTTCAGCAGCAGGAGGGAGATCGTATCAACATCCTGAGGAATGCCATCTGGGTCCACTCTAACCAATTCTCAATGCAATGTGTCAAAGATGATGAGTGTTATGAAGAAGTGAGGAAAACTCTAGAACTGTGTGACATCACGGCAGACAATGACTGCTTTGTTGAGATGAAAAGCACTGGCTCAAGTCCACCAGCTCCCATTGTGTTTGAGAACTATTATGAGAGAGAGCCCTCGACAGACAGCAATGGCAGTGCCTGCTTTGTAGGAGGAGTTATGAAGAGGTTTTCAAACCTTCTGCAAGGGAACTCATCGACTGGCTCTAAAACAAACGTCAATGACAGTTCACAGCCACTAGCACCACCTACTGCCAACACATCAGATGGAGTGTACGCCTCCATTCCTGGATTTCAGCAAGTGCAGCCAACCatctcagaaagcagagaggagtACCAGGCTCTGTATGACTATGCTGCTCAGGGTGAGGACGAGCTGTCCATGTTTGCAGGGGAGACGGTTGTGGTCATTGAACAAGATATGGATGGCTGGTGGACTGTGGAGAGAAACGGCATTTCAGGACTGGTCCCTGGGTCCTATCTGGCCAAAGAATGAACTATCCTTGGCACAAGTAaggacctgagccctaggaccatgcctcaggactacctggcctgatgactccttgctgtccccagtccaccctgtcatgctgctgctccagtttcaactgttctgcctgcggctatgggacCCAGACCTGTTCACTGCACGGGCTACCTTgttccggacctgctgttttggactctctctctactgcacctgctgtctctaactctgaatgatcggctatgaaaagccaactgacatttactcctgaggtgctgacctgttgcactctcggcaaccactgtgattattattatctgactctgctggtcatctatgaacatcttggccatgttctgttataatctccacctggcacagccagaagaggagtggccacccctcagagcctggttcctctctaggtttcttcctaggttctggcctttctagggagtttttactagccatcgtgcttctacatctgcgttgcttgctgtttggggttttaggctgggtttctgtacagcactttgtggcattggctgatgtaaaaagggctttctaaatacatttgattgattgaatgttCTTACAACATTCCCATGAAGCATGTCTAGAACATATCTTaaattctgagaacatggtaaccacaTTCTGGGTAAGTTCACATACgggaacattcctatgaaaacaTTAGTTAATGGTCTGCTGAGACTCTTAAGGGAATGTTCtccaaagttgtgggaacgtTTTTTGTTAGCTGGGCTGTTACATTAAATTAAGTGCCCCTCTGGCGGTGAGGTCGCCAATGTGATAAGGGAGTATAAGCCAATTTGGTTTCAACAGTATGTTGTTATTTCCTTTGAGATTTTGTCTTTGAAATTTGTATTAAGAATAATGGTAGTAGTAATAATTTGTCATACAGTAAATAGTTTGTCCTCTCTCGGGGTTATGGCGAATGTGACCATAGATGGTTTCTAGATGCATGGAAGGGTTAATTCGACCGAGAACAGTGTGAGCCTCACCCCCTCTAACCTGCTGAATTAATGGCGACAATGGCATTAACTATGGCCCTGTCCTTCACCACTTCTACCTGAGTCCGAGCCAGCAACCTGTACACAGCATCTAGTCGAAGCTATCAACTGCCTTTTCTCTCAGGAGGGCAGCATGAGTCCACGTGGAGTGTGTATGGAGAGATCCCGTCCAAACTTCTCTCCTGCTGCTGGTGTACTAGTTGGAAAATGGACAAGACTTAATGCACCGTAAAGGATAGTGGTGGCGGCTAAAGGTGAGAGATTTGTCTGCTTGGGAAAAATCTGATTATTCCCAGATATTGGAATCGGGACATTATCAagggccatccactttgaacatGTGCCATTGAGAAGACAAACTGGAACACTATTTGAAGAAGAAAATGAAGAAACACCAGAAGAATGAGTGCCGGGAAGGATGGGGGTGGTCAAGTGTGCCTGTAATTGATTTATGCTTGTCCAAAAAGTTTTATTTGGGGTAACAGGTTGATTCTGGAGGTCTGCACACTGCAAAATGTATAGTAATTTATACAAaaaatgcattgagatactgacTTGTCATTAACACAGGGACAAATGGGGGCCGTGATGAGAAAATGTAATGCTAGAAATATAAGATGAATATAATGTATGTCAATGTTAGTAGTACATGCTGTATATTTATTTCCCTGTCTGTAAATGTACATTCTGCCAGTGTGTACTAAGTTGAGGGTCTTAAATTCAAGTGATAGACTCAACGCGACGCAGTAGGGACTGTTATTTTAAATTTGGTTTGGATAATTTATCAATAGTTCTAGTCACTCTCTTAGGAACATGAAGGAAGAAGACAAAGTCAAAAATCCAGAATCCATAAATGAAATTGTGTAATCAAGCATATGTAACTGTATGAAATGAAGGTCTTAAGTTAAAACATTCTACTGCAATGGTTTTACAAGTAAGGGGTATGGAATAAGGATCAGTTACTAGTTGTAGTGTACAACTCAGAATGAAGGGTTTGAAAGTGTCTGTGGTTTTTCTGCGTTAATTTTGTTTACTTATAATGATGTATTTTGATAGTTTAAGCAATAACCAAATGaataaaatgtaataataattatCACAGAGTGATAAGA
>XM_021571214.2
CAAACTAGTGAACCAAGCCCTGTGTTCCAGCTGGGGGTTTCCTGTGTGTACATCTTCACTGGCTTTGACAACCATCAGTGCTTTCTTTACTGAATTCACTCGCAGAGTATATTATATTTGGTCTATTGCTGAGATGACTTTACAATTCAAAGATGTATTTTGGGGAGTGGATTTCATCAGTAATGTGGGATATGAGGCTCTCATCCAGAGACTCTGTGAGGGTCGACGGATGTGCAAAGATATGGAGGAGCTCTTGAAGATGAGGGCATCTGCTGAAGAGAGATATGGCAAAGAGTTGGTGATGATTGCACGCAAGGCAGGGGGACTCTGTGAGATCAACACTTTGAAAGCATCCCTTGACCAACTCAAAGTCCAAATTGAGAACATTGGGAACCTACACATACAACTGTCTGGGGTGTTAAAGGAAGAGGTCAAGAGGATGGAACAGTTCAGGGAGCGACAGAAAGAGCAGAGAAAAAAGTTTGAAGGCATCATGGACAAGGTTCAGAAGATAAAGGTGTCTTTATACAAGAAAACAATGGAGTCTAAGAGAACTTATGACCAGAGGTGCAGAGAAGCGGATGAGGCCGAGCAAGTTGCTGAGAGGATGATCAGTGTAGCTACCACCACACCCAAGCAGGCTGAGAGGGTGCACAACAAGTCTAAGCAGTGCAGGGAGGCAGCAGCAGAGGCAGAAAAACAATACATGTCAAATATTGATCAGCTAGACAAGATTCGTCAAGAATGGGAAACTACACACGAGAGTACTTGTGAGGTCTTTCAGCAGCAGGAGGGAGATCGTATCAACATCCTGAGGAATGCCATCTGGGTCCACTCTAACCAATTCTCAATGCAATGTGTCAAAGATGATGAGTGTTATGAAGAAGTGAGGAAAACTCTAGAACTGTGTGACATCACGGCAGACAATGACTGCTTTGTTGAGATGAAAAGCACTGGCTCAAGTCCACCAGCTCCCATTGTGTTTGAGAACTATTATGAGAGAGAGCCCTCGACAGACAGCAATGGCAGTGCCTGCTTTGTAGGAGGAGTTATGAAGAGGTTTTCAAACCTTCTGCAAGGGAACTCATCGACTGGCTCTAAAACAAACGTCAATGACAGTTCACAGCCACTAGCACCACCTACTGCCAACACATCAGATGGAGTGTACGCCTCCATTCCTGGATTTCAGCAAGTGCAGCCAACCatctcagaaagcagagaggagtACCAGGCTCTGTATGACTATGCTGCTCAGGGTGAGGACGAGCTGTCCATGTTTGCAGGGGAGACGGTTGTGGTCATTGAACAAGATATGGATGGCTGGTGGACTGTGGAGAGAAACGGCATTTCAGGACTGGTCCCTGGGTCCTATCTGGCCAAAGAATGAACTATCCTTGGCACAAGTAaggacctgagccctaggaccatgcctcaggactacctggcctgatgactccttgctgtccccagtccaccctgtcatgctgctgctccagtttcaactgttctgcctgcggctatgggacCCAGACCTGTTCACTGCACGGGCTACCTTgttccggacctgctgttttggactctctctctactgcacctgctgtctctaactctgaatgatcggctatgaaaagccaactgacatttactcctgaggtgctgacctgttgcactctcggcaaccactgtgattattattatctgactctgctggtcatctatgaacatcttggccatgttctgttataatctccacctggcacagccagaagaggagtggccacccctcagagcctggttcctctctaggtttcttcctaggttctggcctttctagggagtttttactagccatcgtgcttctacatctgcgttgcttgctgtttggggttttaggctgggtttctgtacagcactttgtggcattggctgatgtaaaaagggctttctaaatacatttgattgattgaatgttCTTACAACATTCCCATGAAGCATGTCTAGAACATATCTTaaattctgagaacatggtaaccacaTTCTGGGTAAGTTCACATACgggaacattcctatgaaaacaTTAGTTAATGGTCTGCTGAGACTCTTAAGGGAATGTTCtccaaagttgtgggaacgtTTTTTGTTAGCTGGGCTGTTACATTAAATTAAGTGCCCCTCTGGCGGTGAGGTCGCCAATGTGATAAGGGAGTATAAGCCAATTTGGTTTCAACAGTATGTTGTTATTTCCTTTGAGATTTTGTCTTTGAAATTTGTATTAAGAATAATGGTAGTAGTAATAATTTGTCATACAGTAAATAGTTTGTCCTCTCTCGGGGTTATGGCGAATGTGACCATAGATGGTTTCTAGATGCATGGAAGGGTTAATTCGACCGAGAACAGTGTGAGCCTCACCCCCTCTAACCTGCTGAATTAATGGCGACAATGGCATTAACTATGGCCCTGTCCTTCACCACTTCTACCTGAGTCCGAGCCAGCAACCTGTACACAGCATCTAGTCGAAGCTATCAACTGCCTTTTCTCTCAGGAGGGCAGCATGAGTCCACGTGGAGTGTGTATGGAGAGATCCCGTCCAAACTTCTCTCCTGCTGCTGGTGTACTAGTTGGAAAATGGACAAGACTTAATGCACCGTAAAGGATAGTGGTGGCGGCTAAAGGTGAGAGATTTGTCTGCTTGGGAAAAATCTGATTATTCCCAGATATTGGAATCGGGACATTATCAagggccatccactttgaacatGTGCCATTGAGAAGACAAACTGGAACACTATTTGAAGAAGAAAATGAAGAAACACCAGAAGAATGAGTGCCGGGAAGGATGGGGGTGGTCAAGTGTGCCTGTAATTGATTTATGCTTGTCCAAAAAGTTTTATTTGGGGTAACAGGTTGATTCTGGAGGTCTGCACACTGCAAAATGTATAGTAATTTATACAAaaaatgcattgagatactgacTTGTCATTAACACAGGGACAAATGGGGGCCGTGATGAGAAAATGTAATGCTAGAAATATAAGATGAATATAATGTATGTCAATGTTAGTAGTACATGCTGTATATTTATTTCCCTGTCTGTAAATGTACATTCTGCCAGTGTGTACTAAGTTGAGGGTCTTAAATTCAAGTGATAGACTCAACGCGACGCAGTAGGGACTGTTATTTTAAATTTGGTTTGGATAATTTATCAATAGTTCTAGTCACTCTCTTAGGAACATGAAGGAAGAAGACAAAGTCAAAAATCCAGAATCCATAAATGAAATTGTGTAATCAAGCATATGTAACTGTATGAAATGAAGGTCTTAAGTTAAAACATTCTACTGCAATGGTTTTACAAGTAAGGGGTATGGAATAAGGATCAGTTACTAGTTGTAGTGTACAACTCAGAATGAAGGGTTTGAAAGTGTCTGTGGTTTTTCTGCGTTAATTTTGTTTACTTATAATGATGTATTTTGATAGTTTAAGCAATAACCAAATGaataaaatgtaataataattatCACAGAGTGATAAGA

Function

NR:

description
proline-serine-threonine phosphatase-interacting protein 1-like isoform X1

GO: NA

KEGG:

id description
K12804 PSTPIP1; proline-serine-threonine phosphatase interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571221.2 False 3681 mRNA 0.43 16 73299580 73316950
XM_021571214.2 True 3530 mRNA 0.44 16 73300171 73316950

Neighbor

gene id symbol gene type direction distance location
isl2a LOC106561155 coding upstream 130377 73163759 ~ 73169203 (+)
tmem266 LOC106561154 coding upstream 153457 73084289 ~ 73146123 (+)
lactb LOC106561153 coding upstream 224311 73072417 ~ 73075269 (+)
LOC110495666 LOC106573503 coding upstream 229982 73056128 ~ 73069598 (+)
tln2b LOC106561152 coding upstream 269355 72888317 ~ 73030225 (+)
si:dkey-24l11.2 LOC106561161 coding downstream 34850 73351800 ~ 73361169 (+)
LOC110495809 LOC106561197 coding downstream 44359 73361309 ~ 73362530 (+)
LOC110495840 LOC106561167 coding downstream 83309 73400259 ~ 73405787 (+)
slc28a1 LOC106561167 coding downstream 92102 73409052 ~ 73418838 (+)
malt3 LOC106561168 coding downstream 119184 73436134 ~ 73454862 (+)
G181948 NA non-coding upstream 2897 73269027 ~ 73296683 (+)
G181930 LOC106561156 non-coding upstream 26548 73244895 ~ 73273032 (+)
G181887 NA non-coding upstream 105215 73193347 ~ 73194365 (+)
G181841 NA non-coding upstream 141727 73111501 ~ 73157853 (+)
G181854 NA non-coding upstream 166982 73132159 ~ 73132598 (+)
G181989 LOC107750509 non-coding downstream 10512 73327462 ~ 73328861 (+)
G181994 NA non-coding downstream 22513 73339463 ~ 73340072 (+)
G181965 NA non-coding downstream 48629 73365579 ~ 73366983 (+)
G182020 NA non-coding downstream 96712 73413662 ~ 73414721 (+)
G182124 NA non-coding downstream 256655 73573605 ~ 73573921 (+)
LOC110533853 LOC106561194 other upstream 1045853 72250884 ~ 72253809 (+)
LOC110495604 LOC106573778 other upstream 1234385 72059717 ~ 72065199 (+)
igf1ra igf1r other upstream 2491676 70794530 ~ 70905277 (+)
G177812 NA other upstream 3186140 70107286 ~ 70113440 (+)
G177067 NA other upstream 3842147 69456558 ~ 69457433 (+)
G181995 NA other downstream 24430 73341380 ~ 73342277 (+)
LOC110501876 LOC106561170 other downstream 259815 73456669 ~ 73580075 (+)
G182139 LOC106561173 other downstream 289942 73606892 ~ 73610237 (+)
G182144 NA other downstream 305586 73622536 ~ 73624518 (+)
G183361 NA other downstream 1212699 74529649 ~ 74535026 (+)

Expression


Co-expression Network