LOC100653450 (LOC106561160)


Basic Information

Item Value
gene id LOC100653450
gene name LOC106561160
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73324175 ~ 73328878 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571234.2
GCTCATCGGGTCACATGACATACAGCTGGTTTATGTGATGCTAGGACTCcggtgtgtgggagagagaatcCACTCCAGTCAGGCATGAATTGTAAACGCAGGAGGACATAGCCAGTTAGTTCACAAATACGTTTTTACTGTAATAGAGAATCCCTATTTTAAACATGGGTCAGTGTGGTATTACCTCATCAAAGACAGTGCTGGTCTTTCTGAACCTCATTTTTTGGGCAGCAGCAGGGATTTTGTGCTATGTTGGAGCCTACGTGTTCATCACCTATGATGACTACGACCACTTCTTTGAGGATGTGTACACCCTTATCCCTGCTGTGACCATAATTGCAGTTGGAGGCCTCCTTTTCATCATCGGTCTTATTGGATGCTGTGCCACAATACGAGAAAGCCGCTGTGGCCTTATAACGTTTGTCATCATTCTCCTGCTGGTGTTTGTGACGGAAGTGGCTGTGGTGGTTCTTGGTTATATTTACAGATCGAAGGTTGAAGATGAGGTCAATCACTCCATCCAGAAGGTGTACAATGAGTACAATGGCACCAATGCAGATGCCTCAAGCCGTGCCATTGACTACGTGCAAAGACAGCTCCATTGTTGTGGAATTCACACTTACTCAGACTGGATGAACACACGCTGGTTTAATGAGTTTCAAAACAACAGTGTACCAGTGAGCTGCTGCAAACCTAATGTCAGCAACTGTACAGGCTCTCTAACCCGTCCTGGAGACCTCTATCCAGAGGGATGTGAAGCCCTTGTTGTGAAGAAACTAAAGGAGATAATGATGTATGTCATCTGGGCTGCACTGACGTTCGCTGCAATTCAGGTATTTGGGATGCTGAGTGCCTGTGTGGTGCTGTGCCGTAGGAGCCGTGACCCTGCCTACGAGCTTCTCATGACAGGGGGAACCTACGCAtaaggaacacacacacctagGTTCATGGCTTTGTCAGTGGGGGATGGTTCACTGGCTTGCCCAAGCTCAGGTCTCCTCTGCTGTAAATTGAAAAGCTCCTCACATGGTGGCTCATACTCCACAATGGTGATGGGTTAAGTAGTGAATAACCTGTTTATTTACATGCTATGTAAGTTGGTATTTTGTTAGACTTTTTTTCAAAAAGCCACAAGCCAAATTCTTAAATGGTGATTAAACAAGGTTTTTTGGTTATTTGTTGCTCTGTGTTATGTGACAAATGATATTTGTTGCGCTTAAGTTTTACCTGTTGTTTGAGGTACACAAGGATGAGGCCTCTGTGAATGATAAACCTACTGTATGGAATATGTGGACTGAATACTTTACTCATATCAGTTTGCAATATGTGTatggttttggaatattttataaatatttgcATTTATCAGGTAGCTGAGTTGAACATTTCCTGTGTGTGAGGTTGCCTTGTGCTACTGCTTTGTTTGGCCCAGACCTCACCCTTCACCAGCACCATTCTGTTTCTGATGAGAAGCAGTTGAACTATAGACGGTATACAAGTCAATGGCACTGCGTCGGCCCACCAGGAATGGGCAGTAACCAAAGTGCAGTCAATTAACTGATTTGCTTTGCAAGAATGTGGGCATTTGATTAATCCACATGCACTGTTACTAAAATGTTCTGTTGTACTTTGTGTGGCGTTGAGCACACTCGTGGTATGTAGGCCTAGttataaaattagatttttaagAAATGTAGTCATGTAGAGAAATAAACCAGAGATGGGGGACTTTAACAAGGAAATAAACTGTATTCCAGCCAGAA

Function

NR:

description
tetraspanin-3

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17293 TSPAN3; tetraspanin-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571234.2 True 1763 mRNA 0.44 7 73324175 73328878

Neighbor

gene id symbol gene type direction distance location
scaper LOC106561156 coding downstream 31356 73176721 ~ 73292819 (-)
etfa LOC100194695 coding downstream 166864 73146221 ~ 73157311 (-)
LOC110495704 nrg4 coding downstream 246066 73076020 ~ 73078379 (-)
c2cd4a LOC106561196 coding downstream 446502 72833292 ~ 72877678 (-)
LOC118937294 NA coding downstream 548526 72774064 ~ 72775649 (-)
kti12 kti12 coding upstream 36688 73365566 ~ 73373678 (-)
znf592 znf592 coding upstream 49297 73378175 ~ 73385597 (-)
alpk3a LOC106561166 coding upstream 89737 73418615 ~ 73440795 (-)
blm blm coding upstream 251018 73579896 ~ 73605873 (-)
ctsh LOC106561173 coding upstream 278011 73606889 ~ 73610117 (-)
G182648 NA non-coding downstream 58477 73233202 ~ 73265698 (-)
G182553 NA non-coding downstream 210295 73107475 ~ 73113880 (-)
G182554 NA non-coding downstream 210730 73107133 ~ 73113445 (-)
G182552 NA non-coding downstream 210834 73107045 ~ 73113341 (-)
G182494 NA non-coding downstream 257451 73011478 ~ 73066724 (-)
G182734 LOC106561167 non-coding upstream 79888 73408766 ~ 73410961 (-)
G182820 NA non-coding upstream 233037 73561915 ~ 73562219 (-)
G182821 NA non-coding upstream 234054 73562932 ~ 73563178 (-)
G182824 NA non-coding upstream 236404 73565282 ~ 73565492 (-)
G182826 NA non-coding upstream 238131 73567009 ~ 73567506 (-)
G180716 NA other downstream 1212512 72110968 ~ 72111663 (-)
G179754 NA other downstream 1849196 71474372 ~ 71474979 (-)
G182708 NA other upstream 16072 73344950 ~ 73345847 (-)
G182882 NA other upstream 347334 73676212 ~ 73676423 (-)
G183096 NA other upstream 664200 73993078 ~ 73993545 (-)
G183538 NA other upstream 778005 74106883 ~ 74110791 (-)
G184006 LOC106561202 other upstream 1401994 74730872 ~ 74732637 (-)

Expression


Co-expression Network