si:dkey-24l11.2 (LOC106561161)


Basic Information

Item Value
gene id si:dkey-24l11.2
gene name LOC106561161
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73351800 ~ 73361169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571245.2
GGAAGGAAAAACAACGTCAGCCATTGGACTTTGGCTGCAGCTACTGTATCTACTGAATGCAACAAAGTAACATCAGCTTTACGGAAACAAACGTATAGCAAATAGCTACATGGAACGTTCACCTGTAAACAGCGTTGAGGTATCACCAGAGAGCAATGgggattctgtctctctgtgtcacaaTGAGGAAGAGAACAGGAATCAACCAGCACATGGTGGCCCTCAAGTCCAGCTGTGTCGTTTCTACTCACAGGGACGGCACTGTAACTTTGGGAGGAAGTGCCGCTTCCTCCATCAAAGAGGAGATTACACCACCCTCACCCAGGGGAAGGTAGATAACTGGACAAAGCAAAGGTCAGAACAGGAGAACCAAAGAGGGACAGGCCCTCACAGCCACCCTGGAATCACACTGCAGAATCCAGTGGTTGACAGCCATGGAGATGTAGGCCACAGGCTGCCCTCCAAACCAAGGGCTGCTCCAACCAGAGTTGAGAGGGCCAACAATCGCCGGCCCTGTCGCTATTTTCTGTCTGGGTGCTGCACCATGGAAGATAGATGTCACTACTGGCACCCACCACAGTTTCCCCTAGTTGACGACCAGCCTGTAGGAGACGGAGGCAGGCCCAGGGTGCCCCATGCCCCCCCTCCCAGTGCCCTTCAGGTGGTCAAACTGAGTGACCTGACTGACAATATCACCAAACAGCTACGGGACACTGAGATCAAGCAGCTGATAAAGCGTTTTCCTAAAGAACAGCTTATTGTGCAGGAACGGAGCGACGGCCAAGTCACCTTCTACCGAGCCACAGTACAGCCCACTGATCCAGACTGGCCTTTTGACTTGAAAGACGTTGACATAATGGTGAGCTTTCCGGAAAAGTACCCACAAGAGGTATTTACATTAGATATACCACTGGACCAGGACTTGCCATCAGTTATGGGAAGgTATGTTGAACAAGCCTCACTGGAATGGCTACAGGCTAAACATGCCACCAATCAGCTGATGGGTAAGGTGGAGCTGCTCTTCCGACCCTTCCTTCGCTGGTTGGATCGCAGCATGGAAAGACTGTTCACTGAGGGAGCCAGGCAGCTGAAAAAAGACATGGAGATAGCAAAGGCCGGAATTCAGTTTGTGCCATACCAGCAGCTCCAGGCAACCGTGTGCAAAGAGCCTGCCGCTGATGACATGCCTGACCCTGTCCTCCACACTGCAACTgatgaggagagcagaggaggagaagatgaggagTGGAAAAAACTATTGTACCCTGGctgtgatgataatgatgatgatgatggtggtgttaGTGATGAAGAGGACCAGGGGAAGGTGGAGAATATTAAGCTCAGTGAGCCCCGCAGAGGAACAGAGGTGAAGCTGCTGGGCCTGAGGCTGGGAGAGGGCACGGCGACCGTGGTCGCCACGCAGGTCACTGTGTGTCTGCAGTGCAGCAGGTGTAAGGTGACAGCAGACCTGACTCTAAATGGCAGGAACCCCTGCACGGCCCAGTGTGAGAAGTGTAACGCAGGGATCAGTGCTGCTTTCAGACCCAGCATGCTGCACCACTACAGTGACGTCCTGGGCTATCTGGACCTGGGCACTGCTGCTCCTGTGGACCTGGTCCTGCAGGACTGTGATTTGGTCATTGTCTGCCTCAACTGCTCCAAAGAGGGACCTGTGAAGAACCTTTTGTATGGCCAGAGCAAGGAGTTCAACTGTCAGCACTGTCACAGCAAACTCAGCATCCTGGTTGACAGCACACGATTCCAGTACATTCCGCCACGCAAAGAGAAAACCGGGCACAGTGACTCTTCACTGACCTATCGGCGTAACATAAGGGACCCTGCCATACAGATGGGGAAACCACTACCTGAGAAGGGATCCTGCAAACACTACAAACAGAGTCATCGCTGGCTCAGGTTCTCATGCTGTGGCCGGGCCTACCCCTGTGACGTGTGTCATGACGAGGACCAGGACCACCCCATGGAGCTGGCCACCAGGATGATCTGTGGTCACTGCTGTAAAGAGCAGCCATACAGCAATGGGAAGCCCTGTGTCAGCTGTGGAGGCATGATGACGAGAGGAGCCTACACCAGTCACTGGGAGGGAGGACTGGGCTGCAGGAGCAAAGTCAAAATGAGCAGAAATGATAAACACAAGTATGCCAACACAAACAAAACAATTTCACGGAAAGCAGCCAGCGAAAATAAATAATCAGAGACAACATGTTAACGTTATGGCAGTGGTTGATCAGGCCTGCTCTGTGTGATTCAAGAGCAACCCTTCTATCAATGCCTTATTGATTTCTAATAAATCAACTATTGTAATGTTATCCAGCTGATGTGATTGGTGAGAAGTGTTAACATTGTTTTGAGGATTGAGCCCCGGTCCTGGAGTAGCACTCAGCCTTGTTGCCCTGGTGGGAACATGCAGCAGAACACTCTCCGGCACAGTACAAGTAACCCTGGTGCTTGTGTTCATTGTAATCACAGACACTCCCATTAAGTTTCTTATCTCTGTAACAGCCTCCCCAAGTGCCTTGTAAAATCAATGCAATGCCCTACATTTACAGTAGACTCTTTAGTGTTGCCACTTTTCCAATTCTCTCACAACTTAACCCACTCATCAATTAAGGATGAGtgctatcccactgggcacaatcGTCAGTTCAACgtttagttttgatttacatttggttgagttgtcaactaatgagGATTCAATgtaaaatcaacaaaaaatgtcacagTGTAATTGGATTTaggtatttaaaaaatacaaaattccctcacgttgactttttgcaaatccgatcagttttccacgttgatctACGAGATCGGTGTTCCTAAACCGGGACAGTTGTTGCTCAATATTCGATAGTGTGACTAGAGTGACGTTGTAAACAacagggacatagacatgtcttctggccagaaagcttaaattcttgttaatctaacggcagtgtccaatttacagaagctattacaacaataaaaataccatgctattgtttgaggatcgtgcacaacaacaaaacatcatggcaactggtttgatatattcacctctgaaggtaaataatgtacttacattcagtaatcttgctctgatttgtcatcctgagggttcCAGAGATGGTGTAGTTTTGTTTGAAAAAAAggtattcaaatgtaggaactggctCCACCCCACACTGCTTCCATCTTGTGGACAACATCTAAATTACACCTAAAATCCTATccttgcttttcaaagatggaacaaaaaacatttttgaaaacacttgttttttttgtttgtattatcttttaccagatctaatgtgttatattctcctacattcatttcacatttccacaaacgtcaaagggtttcctttcaaatggtatcaataatttGCATATTCGTTCTactggcagttagatttgggcatgtcatttttggtgaaaattgaaaaaaagggtccgaaCCTTTTTAATGTCATCACATCATtatttttgttgaaatgacgtggaaacaattatgattcaaccagtttttaccCAGTGGGATGTTCTGTTTCTCAGAACTGTGTTTTGTGTCTTTTAGGTGGGCAGGCTAGACAAAATCTTGGTAGTTTGACCATGGCATCTGGATAGAATAGCTGTGACAGGTTTGCTCCCTTGACCGTAATTAAGTAGCTCCACAAACCGATTATTAGGTAAGATTACATCAGGTTATGCTAAATAATGATTAAGTAAGATTACATGCGATTGGAATCTATGACTAAATAAACTCACTAATCTTCTAAAATAATTTAAGAGCACATGGCCAATGAACAGATGGAAAATAACAGATTTCATGGACTTAACTAATGCTATTGAGAATCAAAATGATGATTGACCATTTTTATATGAATAGGTCACCATGGTTGTCTCAAATTGAAATACAAATATGTAAGAAGTGAATGTTGTGGATATTATCAATTTAATAAATTCTACTAATTAA

Function

NR:

description
uncharacterized protein LOC110495803

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571245.2 True 3991 mRNA 0.45 12 73351800 73361169

Neighbor

gene id symbol gene type direction distance location
LOC110495782 LOC106561158 coding upstream 34850 73299580 ~ 73316950 (+)
isl2a LOC106561155 coding upstream 182597 73163759 ~ 73169203 (+)
tmem266 LOC106561154 coding upstream 205677 73084289 ~ 73146123 (+)
lactb LOC106561153 coding upstream 276531 73072417 ~ 73075269 (+)
LOC110495666 LOC106573503 coding upstream 282202 73056128 ~ 73069598 (+)
LOC110495809 LOC106561197 coding downstream 140 73361309 ~ 73362530 (+)
LOC110495840 LOC106561167 coding downstream 39090 73400259 ~ 73405787 (+)
slc28a1 LOC106561167 coding downstream 47883 73409052 ~ 73418838 (+)
malt3 LOC106561168 coding downstream 74965 73436134 ~ 73454862 (+)
trnah-gug-2 NA coding downstream 94263 73455432 ~ 73455503 (+)
G181994 NA non-coding upstream 11728 73339463 ~ 73340072 (+)
G181989 LOC107750509 non-coding upstream 22939 73327462 ~ 73328861 (+)
G181948 NA non-coding upstream 55117 73269027 ~ 73296683 (+)
G181930 LOC106561156 non-coding upstream 78768 73244895 ~ 73273032 (+)
G181887 NA non-coding upstream 157435 73193347 ~ 73194365 (+)
G181965 NA non-coding downstream 4410 73365579 ~ 73366983 (+)
G182020 NA non-coding downstream 52493 73413662 ~ 73414721 (+)
G182124 NA non-coding downstream 212436 73573605 ~ 73573921 (+)
G182037 NA non-coding downstream 225935 73587104 ~ 73587665 (+)
G182154 LOC108230026 non-coding downstream 274458 73635627 ~ 73636093 (+)
G181995 NA other upstream 9523 73341380 ~ 73342277 (+)
LOC110533853 LOC106561194 other upstream 1098073 72250884 ~ 72253809 (+)
LOC110495604 LOC106573778 other upstream 1286605 72059717 ~ 72065199 (+)
igf1ra igf1r other upstream 2543896 70794530 ~ 70905277 (+)
G177812 NA other upstream 3238360 70107286 ~ 70113440 (+)
LOC110501876 LOC106561170 other downstream 215596 73456669 ~ 73580075 (+)
G182139 LOC106561173 other downstream 245723 73606892 ~ 73610237 (+)
G182144 NA other downstream 261367 73622536 ~ 73624518 (+)
G183361 NA other downstream 1168480 74529649 ~ 74535026 (+)
LOC110496107 LOC106561202 other downstream 1350412 74660359 ~ 74732682 (+)

Expression


Co-expression Network