LOC110495809 (LOC106561197)



Basic Information


Item Value
gene id LOC110495809
gene name LOC106561197
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73361309 ~ 73362530 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021571258.2
CCAGTGGGAGGACAGTGTTGCAGGCACGAACTTGGAACTGGTCAGTGCCGAAAGGTTTGTGTGTGTTCCGGAAGATTAACAAAATCCACCAGAAAAGGACTTATTGTTGAAATTGTATGtaacaaaaaaattacaaaaaaacagCTGTCTCATTGATGTGAGAGCCAAGTCCTTAGCTCAGCACTATATAAAGGGAGAATGTCTTCTCTCTGCACATTACAGCCACAGGCATCCAGAGTAACCAGGATGTTGAACATTAGCAAGATTCAGCTGCCTTTGCAGCTTCCtaccttctccagatcctctGATAGGCTTCTTCAGCCTCTATGGGACTATTTCCTTTTCAACCACTactttctcatctcctctcccttcttccctgtCATACTCTGCTTCTCCAGTTACTTCTTCTCCAGTCTCCCCTTTGCTGTACTAGACCTCCTGGGAGACATGGTCCCCTCCATTCACCACTACAAGATCCAGCAAGAGAGACGTCCAACCATGGGGATGATGGCAAAGAGCTTCGGAAGGGCTGTTTATAACCACTTGATCTTTGTTCTGCCTGCTGTGCTGACTCAGACCTGCTTTATGCCTTCAGTGGCGCTGCCTTCCAGTGCTCCAACTGTGGTAGAGGTTCTCATTGATGGACTTGCTGCCCTTCTTCTTTTTGACACCCAGTATTATATGTGGCACTTTGTGCACCACAAGCATCCACAACTGTATCGGTGGGTCCATGCCATCCACCACGAATACATGGCACCCTTTTCCTGGAACACCCAGCAACTCAGCATTCCAGAACTGATAACAGTGGGATTCTGGAGCAACCTGGACCCCATCCTGCTGAAATGCCACCCTTTTACTACCTGGTGCGTCACCATCATCAGTATCTGGATGTCAGTGGAGGACCACATAGGCTATGACCTGCCATGGGGTCTCAACCACCTGGTACCATTTGGTCTGTTAGGAGGAGCACCAGCTCATGACATGCACCACCAGAAGCCCAACAGTAACTATGCACCTTTCTTCAGCCACTGGGACAGGCTATTTGGCACTGCCATCCTGCCAGGGAAAATAACTGAGAAGAAAGTTATGTATTCACTGTAAATGGGACCATTCAGTATAATTTTGATTACCCTCATGCTTCCATGTTAATTAgaataaatgtatttgtttttattagTAATTTACCGACATCAATTGTATTAAAATGTACTAAACGTTA

Function


NR:

description
cholesterol 25-hydroxylase-like protein 1, member 1

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K10223 CH25H; cholesterol 25-hydroxylase

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021571258.2 True 1222 mRNA 0.46 1 73361309 73362530
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Neighbor


gene id symbol gene type direction distance location
si:dkey-24l11.2 LOC106561161 coding upstream 140 73351800 ~ 73361169 (+)
LOC110495782 LOC106561158 coding upstream 44359 73299580 ~ 73316950 (+)
isl2a LOC106561155 coding upstream 192106 73163759 ~ 73169203 (+)
tmem266 LOC106561154 coding upstream 215186 73084289 ~ 73146123 (+)
lactb LOC106561153 coding upstream 286040 73072417 ~ 73075269 (+)
LOC110495840 LOC106561167 coding downstream 37729 73400259 ~ 73405787 (+)
slc28a1 LOC106561167 coding downstream 46522 73409052 ~ 73418838 (+)
malt3 LOC106561168 coding downstream 73604 73436134 ~ 73454862 (+)
trnah-gug-2 NA coding downstream 92902 73455432 ~ 73455503 (+)
LOC110501876 LOC106561170 coding downstream 94139 73456669 ~ 73580075 (+)
G181994 NA non-coding upstream 21237 73339463 ~ 73340072 (+)
G181989 LOC107750509 non-coding upstream 32448 73327462 ~ 73328861 (+)
G181948 NA non-coding upstream 64626 73269027 ~ 73296683 (+)
G181930 LOC106561156 non-coding upstream 88277 73244895 ~ 73273032 (+)
G181887 NA non-coding upstream 166944 73193347 ~ 73194365 (+)
G181965 NA non-coding downstream 3049 73365579 ~ 73366983 (+)
G182020 NA non-coding downstream 51132 73413662 ~ 73414721 (+)
G182124 NA non-coding downstream 211075 73573605 ~ 73573921 (+)
G182037 NA non-coding downstream 224574 73587104 ~ 73587665 (+)
G182154 LOC108230026 non-coding downstream 273097 73635627 ~ 73636093 (+)
G181995 NA other upstream 19032 73341380 ~ 73342277 (+)
LOC110533853 LOC106561194 other upstream 1107582 72250884 ~ 72253809 (+)
LOC110495604 LOC106573778 other upstream 1296114 72059717 ~ 72065199 (+)
igf1ra igf1r other upstream 2553405 70794530 ~ 70905277 (+)
G177812 NA other upstream 3247869 70107286 ~ 70113440 (+)
G182139 LOC106561173 other downstream 244362 73606892 ~ 73610237 (+)
G182144 NA other downstream 260006 73622536 ~ 73624518 (+)
G183361 NA other downstream 1167119 74529649 ~ 74535026 (+)
LOC110496107 LOC106561202 other downstream 1349051 74660359 ~ 74732682 (+)

Expression


LOC110495809(LOC106561197) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110495809(LOC106561197) Expression in each Bioproject

Bar chart with 21 bars.
LOC110495809(LOC106561197) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network