LOC110495840 (LOC106561167)


Basic Information

Item Value
gene id LOC110495840
gene name LOC106561167
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73400259 ~ 73405787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110495840
TGTTTCTATATCACAGGCTATGTGGCATACTTCATCACAGCATGCATAGTAGACTTTGAGAGGGCCATTGCCCTTGTGGTCCTCACCAGTTTGGCAGTTGTCTCCAAAGCCTATGACCTTGTGAAGACATACCATGGAGATAGCATAACCAAATGTTTCATACCAGctcaaagatgcttcaacaattTCCCGGGATGGATAATAGGAGTTTTCGTTGTGGTGCTGGTCCTGCTAGTGACTTGGCTCGTTGTGGGCACAAGCAAGCGACCAGAGCAGCTTATCTCATTTGGAGGGGTCTACTTGTTCATTCTAGTCATTTTCATCTTCTCAGCCCACAGGACAGAGGTGGCATGGAGGTCAGTTTTTTGGGGTCTTGGTTTACAATTCTGTATCGGACTGTTTGTCATAAGGACAGAGCCAGGACTCACAGCCTTCCAATGGCTTGGAGAGCAAGTGCAGATATTCTTGAACTACACAAAACACGGGTCATCATTTGTTTTTGGACCACTAGTATCCGACATCTTCGCATTTCAGGCTTTGCCCATTGTGATATTCTTCAGCAGTGTGATGTCAGTTCTTTATTTCCTTGGAATAATGCAATGGCTCATCATTAAGATCGCATGGGTAATGCAGATAACGATGGGAACCTCACCCACTGAGACCTTGAGTGTTGCAGGCAACATATTTGTTGGACAGACTGAAGCGCCATTGCAGATTCGCCCCTATTTGATGGACATGACCAAATCTGAAGTGCATGCTGTCATGGTTGGAGGCTTTGTTACCATTGCAGGAAGTGTGATGGGTGCATTCATCTCATTTGGGATTGATGCATCCTCTATGATATCTGCCTCTGTAATGGCTGCCCCATGTGCCTTGGCAATCTCCAAGCTGTCCTATCCGGAGACAGAAGAGAGCAAATTTACATCAGAGGGAAAATATCAAAGTGGCTTGTGgTGATGAACAGAACATTTTGGAAGCAGCTAGCAGTGGAGCATCTACATCAATAGGCCTTGATAGCATTCCTTGCGATACTGGCATTCATCTATGCATCTCTTGGCTGGCTGGGAGGCCTGGTGGGATTTCCCTCTATCACATTTGAGGTATGCTCCAGGCAGCTCCACATACCTTAATCCCATTTCACATTCAAAGATCCTTCTGTCTTGACTTGACATCCATGACTAACCCAGTACTTTGTGATGAGTGATGGACATGCTttggcattttttttatttaacagcGTGTGATGCATGGCTGAATAATTGTGAACATCACAAAATAAGATAAGATAATTATTTCATTGTGCCTTGGTAAAATGTCCAAATCATCGAAATGTGTAAAATAATTCAGATTAGAATATCTGGGGTTCgttccttgttccttgtcaatcattggctcattggtgaaattagcattatgacaATAGCTTTAATGAAATCATTCAAAAtactttattaatgcaattgcagacagaagttgacaagtGGTGCATATTACGCATGTTCCTGAGTAAGTTCTGCAAAATAGAAAAGGTCCCAAGTTATTTTATTAAATCCGAAGTCCATCCCTAGTGATGTCACTGCATACGTCGTTACATTCTACTCATCAGACCAAGCTCATGCATACACAGCTATATAAACTTGCAAGAGAGATACGATAGTTCCAGTGTTTTCTAAGGCCTAGGCAGTGCAGAGTTTTGTCTCAGTCCCACATGTCTCAAAATGTTTCTTTATAAGATatctatacctacagtatatctatcctaccctgcctttctaaggtcttcgaaagccaagtcaacaaacagattaccgaccatttcaaatc

Function

NR:

description
sodium/nucleoside cotransporter 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110495840 True 1824 mRNA 0.42 9 73400259 73405787

Neighbor

gene id symbol gene type direction distance location
LOC110495809 LOC106561197 coding upstream 37729 73361309 ~ 73362530 (+)
si:dkey-24l11.2 LOC106561161 coding upstream 39090 73351800 ~ 73361169 (+)
LOC110495782 LOC106561158 coding upstream 83309 73299580 ~ 73316950 (+)
isl2a LOC106561155 coding upstream 231056 73163759 ~ 73169203 (+)
tmem266 LOC106561154 coding upstream 254136 73084289 ~ 73146123 (+)
slc28a1 LOC106561167 coding downstream 3265 73409052 ~ 73418838 (+)
malt3 LOC106561168 coding downstream 30347 73436134 ~ 73454862 (+)
trnah-gug-2 NA coding downstream 49645 73455432 ~ 73455503 (+)
LOC110501876 LOC106561170 coding downstream 50882 73456669 ~ 73580075 (+)
LOC110495913 ankrd34c coding downstream 327608 73733395 ~ 73737729 (+)
G181965 NA non-coding upstream 33276 73365579 ~ 73366983 (+)
G181994 NA non-coding upstream 60187 73339463 ~ 73340072 (+)
G181989 LOC107750509 non-coding upstream 71398 73327462 ~ 73328861 (+)
G181948 NA non-coding upstream 103576 73269027 ~ 73296683 (+)
G181930 LOC106561156 non-coding upstream 127227 73244895 ~ 73273032 (+)
G182020 NA non-coding downstream 7875 73413662 ~ 73414721 (+)
G182124 NA non-coding downstream 167818 73573605 ~ 73573921 (+)
G182037 NA non-coding downstream 181317 73587104 ~ 73587665 (+)
G182154 LOC108230026 non-coding downstream 229840 73635627 ~ 73636093 (+)
G182155 LOC106573487 non-coding downstream 230763 73636550 ~ 73636988 (+)
G181995 NA other upstream 57982 73341380 ~ 73342277 (+)
LOC110533853 LOC106561194 other upstream 1146532 72250884 ~ 72253809 (+)
LOC110495604 LOC106573778 other upstream 1335064 72059717 ~ 72065199 (+)
igf1ra igf1r other upstream 2592355 70794530 ~ 70905277 (+)
G177812 NA other upstream 3286819 70107286 ~ 70113440 (+)
G182139 LOC106561173 other downstream 201105 73606892 ~ 73610237 (+)
G182144 NA other downstream 216749 73622536 ~ 73624518 (+)
G183361 NA other downstream 1123862 74529649 ~ 74535026 (+)
LOC110496107 LOC106561202 other downstream 1305794 74660359 ~ 74732682 (+)

Expression


Co-expression Network