malt3 (LOC106561168)


Basic Information

Item Value
gene id malt3
gene name LOC106561168
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73436134 ~ 73454862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571375.2
tccattGCGGCCAATTTCATATTTTGGAAGACCGCAGTATCGGTCCAACTCCATGTCGTCTCTGTACCACGTCAGTTCTGGGGCTGGGTTTCCTGTGGACATCACATGGAGATGGCAGCACAGTGCAGGAATGACCAGAACCAACTATACTTGAGGTTTAGAAGCTCCTATTCCACACTGAAGTAATGAAAAACATGATCAGAGACCTTGTCATTGTGCAGCATCCTGTTTCTGTGAGTGTACCACTGAACTATCAGGTGAATCTGAGTGTgagagcagaggggacaggtaTCCTGAACTACCAGTGGTTCAAATCTGATGAAGAGGAGgtatttggTGCAACCAGAGCAGATCTGACTGTCACAGCCCAGAGGTCTCAGCTCTACATTTGCAGAGTGAATGACCAGTTCTGCAACTGTGTGTTCAGTGAATGGGTCAAAGTAAAGGTCCCGGACATTGCTAAACCAGGTCTCCCAGTAGCCTGGCGAGGGGAGCTCCATATTGCTGTACACCCTGCACCCCAGACTGTCAGACAGGGGCAGAGACTCACCCTCAGCTGCTCTGCCTTTGGCATTCCCATCCCACACTACCAGTGGTACAGAAATGGACATCCTCTGCTGGGCAAAACCACTAACACATTGCAGATACATAATGCAGAGGCAGACGATAGAGGAACATATCTCTGCTCTGTGTCCAATGTTGAAGAAGAAAGATGGACAGAGCCAGCTGATGTTGATATAGAGCCATCTAATCAACTCAAAGTCACAGCTCCAAAACTCACAGCGACTGACAAAGTGGCCCTGCTTATTGGTAACCTCAACTACTCCCACCACCCGGACCTGATGGCCCCCACTATGGATGTCCATGAGCTGGCCAACTTGCTGCAGCAGCTGGGCTTCAGAGTGGTGTCTCTTCTGGACCTCACCAGGGAGGAGATGCTGGCAGCCATTGACAAGTTCATTCTTCTGCTTGACAGGGGCGTGTATGCCCTGTTCTACTATGCTGGTCATGGGTACGAACGTTCAGGGAGGAACTACCTGGTGGCCATAGACGCTCCACAGCCCTACCGTCCAGAGAACTGTGTCTGTGTACAGAGGATCATGCGCATGATGCAGGAGAGACGGACtgcattgagtgtggtcttactAGACACCTGCAGAACATGGTACAACCAAGATTGCATAGCTTCTGAAATCAGGCCCTTGGTACCCATGGGAAACACAGTGTATGGATATGCCACATGTGAAGATGCAGAAGCGTATGAGGTGCAGGACGGAGGGAAGAGCACTGGGATCTTCACCAAGTACCTGAACAAGCACATTCTGCAGCCGGAAAAGGTCACTCACGTCCTGGAGCAGGTCTCTGAGGATCTAGGCAGAGACCCTCTGGTCACAGGGAAGCAGGCGGTGGAGATCAAACACACGCTGAAGGAGCCTCGCTCCCTTACAGATCCGGTCAGGACCACCGGCCACACTGGGGAGCTACGGCTGAGAGATGCCTGCTGGAGACAAGCCAACGAGCTACCATGTCAGAAGCTGCTTATTTTCCCCTGTGGAGTTGAGGTGGAGGTCAGCTTCTCTGCCTTGTTCTCTAACGTCATGGTTGCCTTCGGCACAGTGAAAACTATTGGCCCCAGGACCCAGGACTGCACTGTTACTCTGAGGAGCACACCTGCAATGGAGGATATCTTCTCTAGTCCTGGCAGGTCAGGTGAAATGGACTCTCTCTTGCTAAACAACTTGGTTGCTGAAAACCCTGACTGTAGCCTCAGACTTTGTGGCCTTCAAAAGCTCCAGGGATCCTTAGTGATAAAGGTGGACCTACACTATACCCACACGGGCAGCAAGCTGCGGCTGCAAGAGAGCAAACAGCTAGACATAGGAAAACCTTTGGTAGCATCCTGTGATCAGTACAGGGGACAGCAAGCATTGGTGACCCAGAGACAAGAAGGTGCCCCTTCCCAGAGTATGGGCCACGTTTCACACAGCAAGCAGTCCCCACGTCAAACACTGGGACAGCCAGGTCGCCCCTTCACCAGGAAGGCAGAGTGTGCTGCCAAAGTCCCTACAGCAAGGAGCAACGAACCAGAGGAGAATGATGAGACTGAGCCTCAAGACTTTACCTTCTGATTTCCGCTCTCCACGTCTTTGGAAAAAGGatagtttagtagtagtagtgactagTGTAGTCAATAGGATATTTGCTGTTTAGGCTTAAAGCAATGTACATAATTAAATCAGCATGATACATTCTATTTCTCTGGTTAGGCTACATTTCATCAGTTTAATGAtggttatgaggtgtgtgtgtcagtgtgtgtatacatgtggcATGTGAGTTTGAGGAGATTATCTCCTGGATTATGTTCCTCTCTATCTAGCACTATTCGGTTTTTAGTTCTCAGCATGATACCCAAGCAATATTTATTCTTAAATGATCACAGTATGAAAAAAGCTGACTTTTCTACATGCTTgtgaataataacaataataatacacATTTCAGCTCTTATGTACCTGTATGTAACTATTAAAATGAATGAAATACCA
>XM_021571366.2
TTGTTCCGGGAAAAAAGGAtgtccttttatttttttttattgagatAAAGTTTTGAGGATTCTCGATTAGTTAAATTCTCGACTGTAGTTTGTTTGAGGCAGTCGAATGAATGCTCTTACAGTGTGGCATTTACATGGTGTTTGGTCGCAGTTCAGGCAGCACAGTGCAGGAATGACCAGAACCAACTATACTTGAGGTTTAGAAGCTCCTATTCCACACTGAAGTAATGAAAAACATGATCAGAGACCTTGTCATTGTGCAGCATCCTGTTTCTGTGAGTGTACCACTGAACTATCAGGTGAATCTGAGTGTgagagcagaggggacaggtaTCCTGAACTACCAGTGGTTCAAATCTGATGAAGAGGAGgtatttggTGCAACCAGAGCAGATCTGACTGTCACAGCCCAGAGGTCTCAGCTCTACATTTGCAGAGTGAATGACCAGTTCTGCAACTGTGTGTTCAGTGAATGGGTCAAAGTAAAGGTCCCGGACATTGCTAAACCAGGTCTCCCAGTAGCCTGGCGAGGGGAGCTCCATATTGCTGTACACCCTGCACCCCAGACTGTCAGACAGGGGCAGAGACTCACCCTCAGCTGCTCTGCCTTTGGCATTCCCATCCCACACTACCAGTGGTACAGAAATGGACATCCTCTGCTGGGCAAAACCACTAACACATTGCAGATACATAATGCAGAGGCAGACGATAGAGGAACATATCTCTGCTCTGTGTCCAATGTTGAAGAAGAAAGATGGACAGAGCCAGCTGATGTTGATATAGAGCCATCTAATCAACTCAAAGTCACAGCTCCAAAACTCACAGCGACTGACAAAGTGGCCCTGCTTATTGGTAACCTCAACTACTCCCACCACCCGGACCTGATGGCCCCCACTATGGATGTCCATGAGCTGGCCAACTTGCTGCAGCAGCTGGGCTTCAGAGTGGTGTCTCTTCTGGACCTCACCAGGGAGGAGATGCTGGCAGCCATTGACAAGTTCATTCTTCTGCTTGACAGGGGCGTGTATGCCCTGTTCTACTATGCTGGTCATGGGTACGAACGTTCAGGGAGGAACTACCTGGTGGCCATAGACGCTCCACAGCCCTACCGTCCAGAGAACTGTGTCTGTGTACAGAGGATCATGCGCATGATGCAGGAGAGACGGACtgcattgagtgtggtcttactAGACACCTGCAGAACATGGTACAACCAAGATTGCATAGCTTCTGAAATCAGGCCCTTGGTACCCATGGGAAACACAGTGTATGGATATGCCACATGTGAAGATGCAGAAGCGTATGAGGTGCAGGACGGAGGGAAGAGCACTGGGATCTTCACCAAGTACCTGAACAAGCACATTCTGCAGCCGGAAAAGGTCACTCACGTCCTGGAGCAGGTCTCTGAGGATCTAGGCAGAGACCCTCTGGTCACAGGGAAGCAGGCGGTGGAGATCAAACACACGCTGAAGGAGCCTCGCTCCCTTACAGATCCGGTCAGGACCACCGGCCACACTGGGGAGCTACGGCTGAGAGATGCCTGCTGGAGACAAGCCAACGAGCTACCATGTCAGAAGCTGCTTATTTTCCCCTGTGGAGTTGAGGTGGAGGTCAGCTTCTCTGCCTTGTTCTCTAACGTCATGGTTGCCTTCGGCACAGTGAAAACTATTGGCCCCAGGACCCAGGACTGCACTGTTACTCTGAGGAGCACACCTGCAATGGAGGATATCTTCTCTAGTCCTGGCAGGTCAGGTGAAATGGACTCTCTCTTGCTAAACAACTTGGTTGCTGAAAACCCTGACTGTAGCCTCAGACTTTGTGGCCTTCAAAAGCTCCAGGGATCCTTAGTGATAAAGGTGGACCTACACTATACCCACACGGGCAGCAAGCTGCGGCTGCAAGAGAGCAAACAGCTAGACATAGGAAAACCTTTGGTAGCATCCTGTGATCAGTACAGGGGACAGCAAGCATTGGTGACCCAGAGACAAGAAGGTGCCCCTTCCCAGAGTATGGGCCACGTTTCACACAGCAAGCAGTCCCCACGTCAAACACTGGGACAGCCAGGTCGCCCCTTCACCAGGAAGGCAGAGTGTGCTGCCAAAGTCCCTACAGCAAGGAGCAACGAACCAGAGGAGAATGATGAGACTGAGCCTCAAGACTTTACCTTCTGATTTCCGCTCTCCACGTCTTTGGAAAAAGGatagtttagtagtagtagtgactagTGTAGTCAATAGGATATTTGCTGTTTAGGCTTAAAGCAATGTACATAATTAAATCAGCATGATACATTCTATTTCTCTGGTTAGGCTACATTTCATCAGTTTAATGAtggttatgaggtgtgtgtgtcagtgtgtgtatacatgtggcATGTGAGTTTGAGGAGATTATCTCCTGGATTATGTTCCTCTCTATCTAGCACTATTCGGTTTTTAGTTCTCAGCATGATACCCAAGCAATATTTATTCTTAAATGATCACAGTATGAAAAAAGCTGACTTTTCTACATGCTTgtgaataataacaataataatacacATTTCAGCTCTTATGTACCTGTATGTAACTATTAAAATGAATGAAATACCA

Function

NR:

description
mucosa-associated lymphoid tissue lymphoma translocation protein 1-like

GO: NA

KEGG:

id description
K07369 MALT1; mucosa-associated lymphoid tissue lymphoma translocation protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571375.2 False 2549 mRNA 0.49 15 73436134 73454862
XM_021571366.2 True 2591 mRNA 0.48 15 73441465 73454862

Neighbor

gene id symbol gene type direction distance location
slc28a1 LOC106561167 coding upstream 17296 73409052 ~ 73418838 (+)
LOC110495840 LOC106561167 coding upstream 30347 73400259 ~ 73405787 (+)
LOC110495809 LOC106561197 coding upstream 73604 73361309 ~ 73362530 (+)
si:dkey-24l11.2 LOC106561161 coding upstream 74965 73351800 ~ 73361169 (+)
LOC110495782 LOC106561158 coding upstream 119184 73299580 ~ 73316950 (+)
trnah-gug-2 NA coding downstream 570 73455432 ~ 73455503 (+)
LOC110501876 LOC106561170 coding downstream 1807 73456669 ~ 73580075 (+)
LOC110495913 ankrd34c coding downstream 278533 73733395 ~ 73737729 (+)
idh2 LOC100194640 coding downstream 302110 73756972 ~ 73768531 (+)
LOC110495946 LOC106561177 coding downstream 428689 73883551 ~ 73984737 (+)
G182020 NA non-coding upstream 21413 73413662 ~ 73414721 (+)
G181859 NA non-coding upstream 28797 73136787 ~ 73407337 (+)
G181965 NA non-coding upstream 69151 73365579 ~ 73366983 (+)
G181994 NA non-coding upstream 96062 73339463 ~ 73340072 (+)
G181989 LOC107750509 non-coding upstream 107273 73327462 ~ 73328861 (+)
G182124 NA non-coding downstream 118743 73573605 ~ 73573921 (+)
G182037 NA non-coding downstream 132242 73587104 ~ 73587665 (+)
G182154 LOC108230026 non-coding downstream 180765 73635627 ~ 73636093 (+)
G182155 LOC106573487 non-coding downstream 181688 73636550 ~ 73636988 (+)
G182209 NA non-coding downstream 251470 73706332 ~ 73766435 (+)
G181995 NA other upstream 93857 73341380 ~ 73342277 (+)
LOC110533853 LOC106561194 other upstream 1182407 72250884 ~ 72253809 (+)
LOC110495604 LOC106573778 other upstream 1370939 72059717 ~ 72065199 (+)
igf1ra igf1r other upstream 2628230 70794530 ~ 70905277 (+)
G177812 NA other upstream 3322694 70107286 ~ 70113440 (+)
G182139 LOC106561173 other downstream 152030 73606892 ~ 73610237 (+)
G182144 NA other downstream 167674 73622536 ~ 73624518 (+)
G183361 NA other downstream 1074787 74529649 ~ 74535026 (+)
LOC110496107 LOC106561202 other downstream 1256719 74660359 ~ 74732682 (+)

Expression


Co-expression Network