XLOC_002069


Basic Information

Item Value
gene id XLOC_002069
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20643335 ~ 20645459 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005872
TGCGacccatgatgctttgcaagTTCTTCACAtgttttcagctagaataaaggtGATCCTGTTGCTCTGTTAAGTCAAGTGTGTTCATTAAACTATTACAGGCCCCGAATAACTAAATCCACTCCAGCCAAAAGTACAAGTTAAAGTACAATTTGAAACGCAGTAGCCACGTGCAGATGTGGATAACAAGATCTAAATTGAGTCTAGATGTACCTCCGCTTGTGTGGACGAGATACAGGCTAAATTCATCCGGACTGTTCTCGATCTTGAACTTGTTCAGTAACACCCGCATCACCTGTGATGTCGTCATACAGCTGTTGACGCGCACATTCGTCACAGAGCCGACCGCTGGAGTAAAAACCGCCGTCTATTTGACAAATAACATCGTCAGCAAAAGTGGGCAAATGTTTACCAAAGTGTAAACGATTTTACAAAACGCCTGCCTTGTGGTTATAAAAGTGTCCGTTGAAGGAGCACCGGTGTCTTTGGACTCTCCTGATTCCGAGTCGTCGTCCGCCGATTTTCCTGCCACTGACATCACTTCTGGTTCTGTTGAGCCGATCAGAAAGAGTCGACTCATGATGTCCTTCTCCTGACAAAAACAAATTTACGAGGAGTCAGAGGAACAGTTGGCAATGAATAAACACTGCTGAGGTTTTGGGAGAAGTGGAGGAAAGTATTGACCTGCCTCCTGCTTCTCTTCACTGGAGTCTCTCGACCGCTCTTCTGCTGCGGTGACCTCAATGGAAACTGGCGGCTGATGTGTTTCGTTACTTCTACAAGTGGTGTCACTAAGGGGCGTGGCCTGCCA
>TCONS_00005873
CTGCCACTGACATCACTTCTGGTTCTGTTGAGCCGATCAGAAAGAGTCGACTCATGATGTCCTTCTCCTGACAAAAACAAATTTACGAGGAGTCAGAGGAACAGTTGGCAATGAATAAACACTGCTGAGGTTTTGGGAGAAGTGGAGGAAAGTATTGACCTGCCTCCTGCTTCTCTTCACTGGAGTCTCTCGACCGCTCTTCTGCTGCGGTGACCTCAATGGAAACTGGCGGCTGATGTGTTTCGTTACTTCTACAAGTGGAGACACACGGAAGAATGAAGTAATGAAGTTTATCTGCGACCAGAAGAAAAACTCATGACTTCAAGCCTCATAATCGCAAAATAACCTCAGGCAAGATTcccacacacagaaacacacactcaaactcgacaaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005872 False 811 lncRNA 0.46 2 20643335 20644918
TCONS_00005873 True 394 lncRNA 0.46 2 20643860 20645459

Neighbor

gene id symbol gene type direction distance location
XLOC_002068 prnpb coding upstream 10556 20628698 ~ 20632779 (+)
XLOC_002067 letm2 coding upstream 16540 20589969 ~ 20626795 (+)
XLOC_002066 NA coding upstream 141157 20501776 ~ 20502178 (+)
XLOC_002065 NA coding upstream 190705 20448467 ~ 20452630 (+)
XLOC_002064 r3hcc1 coding upstream 241174 20392083 ~ 20402161 (+)
XLOC_002070 NA coding downstream 19557 20665016 ~ 20667861 (+)
XLOC_002071 BX548043.1 coding downstream 38577 20684036 ~ 20684150 (+)
XLOC_002072 NA coding downstream 86155 20731614 ~ 20738676 (+)
XLOC_002073 NA coding downstream 458462 21103921 ~ 21106710 (+)
XLOC_002074 NA coding downstream 534025 21179484 ~ 21208200 (+)
XLOC_002063 NA non-coding upstream 262022 20377088 ~ 20381313 (+)
XLOC_002058 CABZ01059623.1 non-coding upstream 917741 19602334 ~ 19725594 (+)
XLOC_002056 CABZ01059627.3 non-coding upstream 1053602 19583289 ~ 19589733 (+)

Expression


Co-expression Network