XLOC_020690


Basic Information

Item Value
gene id XLOC_020690
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 1260950 ~ 1269440 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042243
aacaactctcggatcagctttgaagatcgaaactggatcgtgtcaaatcgtcaatatccaaatccagctaactgagtaatccacgtatgaagaacggaccccttgAGACGGTCGTCATGACGGCAGAATATATGCAGGACCAAAACATAGACGAGTCGGTACCGTGTGGGGTAGATGTATGTTTTTAAAGGTTTTCATACGGCCTAATCCTCACTATTTTGACCAAATACATCATGAAATATGTATTTCAGTGTTACAATCTGTTTATGAAGTAAATCTAAAACAATAAGAAAGCTGAAGAGGGGTAAATAATGTCCCCTACCTGATGCTTTACTGTACACACTTAACTGGCGCGAAAATAATCCAGTCTCCTGGGGAAAGACACAAGATGGCGAAagtcatattttaattaataaaaacagtgCCAAACAACCGAGCTAAAGTCTGATATAGCtacagaattcattcattttcttttaggcttagtctctttattaatctgtggtcgccacagcggaatgaaccgccaacttatccagcacgtttttactcagcggatacccttccagccgcaacccatctctgggaaacatcaacacacacacacacacacactcatacaatttagCTGCCCAATTGATGGCggcaaatattaaattatatatttgaatGCAGTGACTGacttaaccctgctgaaaaatccagcttaaac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042243 True 712 lncRNA 0.40 2 1260950 1269440

Neighbor

gene id symbol gene type direction distance location
XLOC_020688 ampd2a coding downstream 15724 1205787 ~ 1245226 (-)
XLOC_020689 CU570769.4 coding downstream 30928 1229906 ~ 1230022 (-)
XLOC_020687 NA coding downstream 78471 1182084 ~ 1182479 (-)
XLOC_020686 NA coding downstream 92659 1156430 ~ 1168291 (-)
XLOC_020685 si:ch1073-15f12.3 coding downstream 181177 1073413 ~ 1079773 (-)
XLOC_020692 NA coding upstream 46288 1315728 ~ 1316773 (-)
XLOC_020693 BX322657.4 coding upstream 51551 1320991 ~ 1359856 (-)
XLOC_020694 NA coding upstream 93900 1363340 ~ 1365341 (-)
XLOC_020695 NA coding upstream 171238 1440678 ~ 1457344 (-)
XLOC_020696 NA coding upstream 180418 1449858 ~ 1453031 (-)
XLOC_020684 NA non-coding downstream 237419 1018345 ~ 1023531 (-)
XLOC_020676 NA non-coding downstream 500064 739300 ~ 760886 (-)
XLOC_020697 NA non-coding upstream 212043 1481483 ~ 1589655 (-)

Expression


Co-expression Network