ctsh (LOC106561173)


Basic Information

Item Value
gene id ctsh
gene name LOC106561173
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73606889 ~ 73610117 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571425.2
AATTCGGGAAGTGATCAAGCCTCGTGACTTTCGGTTAGTTCATTCACTGCTCTCACTGTTTGTTGCAGGAAGACAACAGCTTTACCAAACTTTGAAGTATGAAGATCTTGGTTTTGTTGATATTTGCCGTATACTCTGTTACTTCTTTATATCCGTTTTCCGAGGAGGGCGAATATCACTTTAAGTTATGGATGTCACAGTACAACAAGGTGTATGACATGGAGGAGTACTACCACAGACTTCAGATCTTCATTGAGAACAAGAGGAGGATTGACTATCACAATGAAGGAAATCACACGTTCACAATGGGACTGAATCAGTTCTCTGACCTGACGTTTGCTGAATTCAGAAAATCTTTCCTCTTGACTGAGCCCCAGAACTGTTCTGCCACTAAAGGGAGTCATGTGAGCAGCAATGGACCATATCCAGAGTCGGTCGACTGGAGAAAGAAGGGGCACTATGTCACAGCGGTGAAGAACCAGGGGCCCTGTGGTAGCTGCTGGACCTTTTCCACTACAGGCTGTTTGGAGTCAGTCACAGCAATCGCAACAGGGAAACTCCTACAACTGTCAGAGCAGCAACTAGTGGACTGTGCTCAGGCCTTCAACAACCACGGCTGTAATGGcGGGCTCCCCAGTCAAGCATTTGAGTACATCAAGTATAACAAGGGAATCATGACAGAGGAGGACTATCCATACACTGCACATGATGACACTTGCAAATTCAAGACTGAGTTGGCTGCTGCTTTTGTTAAAGATGTAGTCAACATAACAAAGTATGATGAAATGGGTATGCTGGATGCAGTGGCCAGATTCAACCCTGTCAGCCTTGCCTATGAGGTGACCTCTGATTTCATGCATTATGATGGTGGTGTGTACACCAGCATGGAGTGTCACAACACCACAGACACAGTGAATCATGCAGTGCTGGCTGTGGGGTATAGTGAGGAGAAGGGCACACCCTACTGGATAGTGAAGAACTCCTGGGGAAGCAGCTGGGGAATGAAAGGCTATTTCTTCATTGAGCGTGGGAAAAACATGTGTGGACTGGCTGGCTGCTCATCTTATCCCCTTCCTGTGCTGTGAATGTTGAATTCTGCATGCCATGGGGGCAAGAGTAGAAAAAAGGGACATGGAGCCAAAGATTTCATTATCAGTTAAACTTTTAAATCAATGATATGGTTTGATTTTTATGTTTGCTCACCACCTCAGGGAGTATGATTATATACTGGGAGAAACACTCCCCACTGCACATCTACTGTTTTTAATCAGGATTAGATTATTGTGCTGACATGAAGATTGTTAtgattttaataatgtgaaattgtttttttaaactgATTTCATGTTTGTGAATAAAGTTTCTTGATTTCTCTGTCACAA

Function

NR:

description
pro-cathepsin H-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K01366 CTSH; cathepsin H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571425.2 True 1382 mRNA 0.44 12 73606889 73610117

Neighbor

gene id symbol gene type direction distance location
blm blm coding downstream 1016 73579896 ~ 73605873 (-)
alpk3a LOC106561166 coding downstream 166094 73418615 ~ 73440795 (-)
znf592 znf592 coding downstream 221292 73378175 ~ 73385597 (-)
kti12 kti12 coding downstream 233211 73365566 ~ 73373678 (-)
LOC100653450 LOC106561160 coding downstream 278011 73324175 ~ 73328878 (-)
rasgrf1 LOC106561174 coding upstream 157 73610274 ~ 73646136 (-)
si:ch211-107o10.3 LOC106561176 coding upstream 129065 73739182 ~ 73749958 (-)
LOC110495933 zn710 coding upstream 158467 73768584 ~ 73775448 (-)
LOC110495977 NA coding upstream 400385 74010498 ~ 74014413 (-)
LOC110495986 LOC106561179 coding upstream 408402 74018519 ~ 74067110 (-)
G182831 NA non-coding downstream 34853 73571600 ~ 73572036 (-)
G182829 NA non-coding downstream 36466 73570202 ~ 73570423 (-)
G182826 NA non-coding downstream 39383 73567009 ~ 73567506 (-)
G182824 NA non-coding downstream 41397 73565282 ~ 73565492 (-)
G182821 NA non-coding downstream 43711 73562932 ~ 73563178 (-)
G182876 NA non-coding upstream 58838 73668955 ~ 73669190 (-)
G182881 NA non-coding upstream 65262 73675379 ~ 73675604 (-)
G182883 NA non-coding upstream 67162 73677279 ~ 73677546 (-)
G182903 NA non-coding upstream 93648 73703765 ~ 73704092 (-)
G183084 LOC106561177 non-coding upstream 371211 73981328 ~ 73987065 (-)
G182708 NA other downstream 261042 73344950 ~ 73345847 (-)
LOC110495704 nrg4 other downstream 528510 73076020 ~ 73078379 (-)
G182494 NA other downstream 540165 73011478 ~ 73066724 (-)
c2cd4a LOC106561196 other downstream 733144 72833292 ~ 72877678 (-)
G180716 NA other downstream 1495226 72110968 ~ 72111663 (-)
G182882 NA other upstream 66095 73676212 ~ 73676423 (-)
G183096 NA other upstream 382961 73993078 ~ 73993545 (-)
G183538 NA other upstream 496766 74106883 ~ 74110791 (-)
G184006 LOC106561202 other upstream 1120755 74730872 ~ 74732637 (-)
LOC110496186 LOC106561212 other upstream 1996110 75595366 ~ 75607735 (-)

Expression


Co-expression Network