LOC110495913 (ankrd34c)


Basic Information

Item Value
gene id LOC110495913
gene name ankrd34c
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73733395 ~ 73737729 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571436.2
TATTGGACTGATCTATTGCGTTTCCATAACAAAAGCGACCAACATGATGCGCTATGGTGCAAGAGCTCTTAACCTAAACTAGGACAGTATTTGAGAACCTCCGATTAAATTCAGGGACTATAACGAAGAACCATTTGGAAACTTTTATTTTCATTATGTTTCAGGGTAGGTAATGACAAAACATTGGGTGCACCTTTGAATATGACAAGCCTGGATCAGGGCTGCAGGTTGTGACTGCCTTTCACCACTGAGGGAGGGCGCTATCTGTGGTTGTCTTGGAGATGATGGCAGACATACTGGAGCTGCGGACAGACGGGAATTCGCTTCTGAAAGCGGTATGGCTCCGACGCCTGCGGCTCACCAGGCTCCTGCTTGAGGGGGGTGCCTATATTAATGAGAGCAACGAGCGAGGAGAGACACCGCTCATGGTGGCCTGCATGTCCAAACACAGCGACCCGCAGAGTGTCAGCAAGGCAAAGCTGGTCAAGTATCTGCTGGATAATAAGGCTGACCCTAACATCCAGGACAAAGCAGGCCGGACAGCCCTGATGCACGCCTGTAGCCAGAGGGCGGGGCATGAGGTGGTGTCCCACCTGTTGACCAATGGGGCTGACCCAAGTCTTGAAGACAGGAGCGGGGCTTCTGCTTTGGTCTATGCAGTCAATGTCGATGATAAGGAGACCCTAAAGGTTCTCCTAGATGCATGTAAGGCCAAGGGCAAAGAAGTAATCATTATCACCACAGACAAGTCACCCTCTGGCACCAAAACCACCAAGCAGTACCTTAATGTCCCCCCTTCCCCAGAGCTAGAGGATAGGTGCTCCCCTGCATTCTGCACCACTCCCTCTGACATTGAGCTCAACACCTCCCCCTCACCTAACTCAGCCGAGCAGCACAACACTATCTTCAGTTTCCAGACAAAGTTGAAAACATCATCCAGCACAGCAGCAAAGCTTCCCAATGGGCCAACCTCTCCCACACGGCGACCAGCCAACCCCAAGCGTGCTCGTTTACCCCAGCTGAAGCGTCTGCAGTCAGAGCCGTGGGGGCTGATCGCTCCCTCCGTCCTGGCTGCAGCTGCGGCCCACGAGGAGTGTAAGAGAGCCACCTCTGAGGAGGTCGTCACAGGCGTCAATGGACTTGCTCTGTCCAAGAGATCGACTATGTCTCGACAAAACAGTGTGGATGGCAAGGATGTGTTGTTCCCACAAATGTCATCCTCATTGTCTGTCCCTCTAACTTCCAAATCGGCCTATGAGAGGTCTCTGTGTCAGCACCAGCCCCTGGCCCGGCGTAGCACCGTCCCTGCAGACCaggacagtagcagcaacagtgtGCCAGCTAGCTTGAGAGACCCGGTCTACAGGAGACGGCTGGGCACTGACCACTATGACTCAGACTCCCAGCTGTACTCAGACTCTGGCATGCTGGACTCTCCTAAGGTTCCTCTAGAGAGGAGGAAACTCAACACGTCTCCATTAGCCATGCTGACCAGCTCCAGGGAGTCCCTAGACAGCAATGCCAGCACGTCATCACCTAGCACAGCACGTCGCCGCGCACCAGGCCTCTTGGAGAGGCGAGGCTCGGGGACTCTGCTGCTGGACTACATTTCCCATACCCGGCCTGGCCATCTACCCCCACTGAACGTCAACCCCAACCCTCCTATCCCAGACATCGGAGCCAGCAGCAAGCCCTCATCCCCTCTTGCCTCAGGTTTCATATCAGTAGCTCCAGTAGCACCAAACTCACCAAAGAGAGGCCAGCTCAAGTCAAAAAAAAAACTTGTAAGGAGGCACTCTATGCAAGTGGAGCAAATGAAGCAGCTCTCTGCTTTTGAGGAGCTGTAGTGGACTCATTGTTTGTAGATGTAGCAATGTTAATATAAAATAAGGCTAACATTTCTAAAGGAAATTTTGTTGATTGGAATTTCAACTTTTCCTCTTAGAAAACCAGTGGAACATGGATATAACTTGCTTACCAGTATAAAGTTGTAAATGTTATGGATGCTCTTAGAATATTAGCACCACCTATTAAACGTTACAGGTTAGACACTAGCAACATCTAAAGCATGGCTCTCCTAACCgtgttcctgaagagctaccctcctgtaggattTCGCTAAACTGATTCCGTGTATCAactagctaattattagaatcaggtgcgctaaATTAGAGTTAGAGCAAaaaggacggtagctctccaggaacagggttggctgagagatttttttaaaagtatttgaAAATCATACAAATTATTTGATCATAAGTTTATGAAAAATAATCCTCGTCGGCACCTCAAATCCTTTAGATGTGCAATCCTaagaacacatacagtaggaggtACGTGTGTAGCCAACAAGTCATCTGGTTGTATAGAATGTTGTTATTAGTGCAACAGGCCTCTTGTTGTAGCTTTAGTATTAAATTGAGGTTGATTGTTTTGTAGCAAACTTGTACACAGTGCCTTCCAGACAAATTATCGGAAAAGAGGGTGGATCAAAAAGTAATTTATCGTTCATAATGCAACCACAAGATGTTTTGTTTTAGTGCCGTTGGTGTAAAGCCCAATATGAAAGGCTCAGAGTATAAACAAACCATGTATGACTTATATGCCTTAGCTAAATACAATTTAAGAGATTACGTAAATCAGCACTTTATTATGGTAGGTTTTAAATTACCCAAGAGAAAAATGTACGTTGTTTCTCTAAATGTTTTGTAGATATAGCACATGTATGTTCATGCATCAGTTCCATGACAAGACAACATAATGTGTATACTACAAACGTACGTAAATACAGGCTTAGTGAACCTTGTTCCCCTAGAATAGAATTTACACTTATGGCAAAGTAAAAGTTCATACAGCTTCCATGTAACTTAACTATGAGACATTCATTCTGTTTAAAAGGCTCACGTTAACATATTTCGATGCATAGTATTTTTGTATGTAGTTTGCTGTGTATTCTAAATAAATGTCTCTAAAGCAAA
>TU206778
CGTTTCCATAACAAAAGCGACCAACATGATGCGCTATGGTGCAAGAGCTCTTAACCTAAACTAGGACAGTATTTGAGAACCTCCGATTAAATTCAGGGACTATAACGAAGAACCATTTGGAAACTTTTATTTTCATTATGTTTCAGGGTAGGTAATGACAAAACATTGGGTGCACCTTTGAATATGACAAGCCTGGATCAGGGAGATCGAAGCTTACAGAAGATACATGTGACAAGATTAGGCCCCTAGAAAAAGAAAAGGAAAgtcgcacactctaggagctcagatgcaataattgtaTAACCAACGTTCCTGACAGCCAAGccgtcttcatcagggtatataTAAAGGTTAGGCTCCGATTTATAACGAAGTTATATTTTTTTCATTGCTACAATCAGTTTCATGTTTTGACAATAACGCTACCTAGATAGGTCTAAAGTTTCGTCCATAATTGACATACCTGTCCATGTCTTCAAATGTGATTTTTACTGAACAC

Function

symbol description
ankrd34c Orthologous to human ANKRD34C (ankyrin repeat domain 34C).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571436.2 False 2990 mRNA 0.46 2 73733395 73737729
TU206778 True 499 lncRNA 0.38 2 73733413 73734816

Neighbor

gene id symbol gene type direction distance location
LOC110501876 LOC106561170 coding upstream 155215 73456669 ~ 73580075 (+)
trnah-gug-2 NA coding upstream 277892 73455432 ~ 73455503 (+)
malt3 LOC106561168 coding upstream 278533 73436134 ~ 73454862 (+)
slc28a1 LOC106561167 coding upstream 314557 73409052 ~ 73418838 (+)
LOC110495840 LOC106561167 coding upstream 327608 73400259 ~ 73405787 (+)
idh2 LOC100194640 coding downstream 19243 73756972 ~ 73768531 (+)
LOC110495946 LOC106561177 coding downstream 145822 73883551 ~ 73984737 (+)
LOC110495967 LOC106573468 coding downstream 261540 73999269 ~ 74010559 (+)
LOC110495989 LOC106573469 coding downstream 332235 74069964 ~ 74110824 (+)
LOC110495996 LOC106561183 coding downstream 388494 74126223 ~ 74139502 (+)
G182155 LOC106573487 non-coding upstream 96407 73636550 ~ 73636988 (+)
G182154 LOC108230026 non-coding upstream 97302 73635627 ~ 73636093 (+)
G182037 NA non-coding upstream 145730 73587104 ~ 73587665 (+)
G182124 NA non-coding upstream 159474 73573605 ~ 73573921 (+)
G182020 NA non-coding upstream 318674 73413662 ~ 73414721 (+)
G183089 NA non-coding downstream 252808 73990537 ~ 73991061 (+)
G183091 NA non-coding downstream 253636 73991365 ~ 73991640 (+)
G183099 NA non-coding downstream 257426 73995155 ~ 73995604 (+)
G183100 NA non-coding downstream 257953 73995682 ~ 73995943 (+)
G182144 NA other upstream 108877 73622536 ~ 73624518 (+)
G182139 LOC106561173 other upstream 123158 73606892 ~ 73610237 (+)
G181995 NA other upstream 391118 73341380 ~ 73342277 (+)
LOC110533853 LOC106561194 other upstream 1479668 72250884 ~ 72253809 (+)
G183361 NA other downstream 791920 74529649 ~ 74535026 (+)
LOC110496107 LOC106561202 other downstream 973852 74660359 ~ 74732682 (+)
LOC110496116 LOC106561204 other downstream 1148369 74828267 ~ 74890826 (+)
LOC110496136 LOC106561223 other downstream 1299523 74991655 ~ 75145608 (+)
LOC110496459 LOC106561246 other downstream 2429928 76167573 ~ 76181555 (+)

Expression


Co-expression Network