si:ch211-107o10.3 (LOC106561176)


Basic Information

Item Value
gene id si:ch211-107o10.3
gene name LOC106561176
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73739182 ~ 73749958 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571454.2
TTGACCTTCCAGTACTTCCTGATTGCACATTACGTCACATTGATAAACAGTTTTATTTCGACAAAGTTGATATGTATGAGATTGATATATATCAGTTGAATTAACTAGAGCTTCTCCTGGTTCTTTTCGCTGAATAGCAATATTGAAGAGAGGTTACTTCTACAGTCAGTAGCACTTAAAGAACTGATAACATGCAGAACTACGGTAAAgcaataaatactttttttggacAATATCAGACGGGGATTGCTCTTATCACAGTCacagGAGTGGGGCTCTTTGCTCTGCGTAAATGGCTGGCTGGAGGGGTGTGTACGAGCAAAGCCCGGCTGGACGGGAAGACTGTCCTTATCACCGGAGCCAACACTGGGATTGGGAAAGAGACTGCAGTTGACATGGCTAGCAGGGGGGCGAGGGTTATTCTGGCCTGCAGGGACATGACAAGAGCCAATCAAGCTGCAGAGGGCATCAGGAGGAGGAGTGGCAATGGGAATGTGATTGTCAAAAAGTTGGACTTGGCATCCCTACAGTCAGTGCGACAACTAGCCAAAGAGATCCTGGAAAGTGAAGAGAGACTGGACATCCTTATTAATAATGCAGGTATCATGAGCTGTCCAAAATGGCAGACTGAAGATGGCTTTGAGATGCAGTTTGGCACCAACCACTTAGGCCACTTTTTATTGACAAATTGCCTTTTGAATCTCCTTAAGAAATCAGTTCCAAGCCGTATTGTCAACGTCTCCAGTTTAGCTCATGAAAAAGGCAAGATCTATTTTGATGACATAAACTTAGATAAAGATTACAGTCCATGGAAAAGCTACCGGCAAAGTAAGCTAGCTAATGTGCTCTTTACTCGGGAGCTGGCAACACGACTACAAGGAACTGGAGTAACTACTTACAGCCTCCATCCTGGAGTCATCCGGACTGAGCTTGGCCGGCACTTCTGGCCCACCATGCCCCTGTGGAAAAGAGCCATCTACAAGACTCTTAGTTTTTGGCTCAAGTCCCCTAGAGAGGGAGCCCAGACCACCATCCACTGTGCCGTAGAAGAAAGCCTGGCAGATGTCAGTGGACTCTACTACAGTGACTGCGCCCCAAAAACTGTGGCCCCTCAGGGCCAGGATGATGCAGCTGCCAAGAAACTGTGGGACCTGAGTGCCTCCATGGTTGGTCTGGCATGATGGACCTGGTTACCACTAGGACTGGCCTAGCCTTTAGAAtgttgacatacagttgaagtcagaggtttacatacacttaggttggagtcattaaaacctatttctcaaccactcc

Function

NR:

description
PREDICTED: retinol dehydrogenase 12-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571454.2 True 1296 mRNA 0.47 7 73739182 73749958

Neighbor

gene id symbol gene type direction distance location
rasgrf1 LOC106561174 coding downstream 93046 73610274 ~ 73646136 (-)
ctsh LOC106561173 coding downstream 129065 73606889 ~ 73610117 (-)
blm blm coding downstream 133309 73579896 ~ 73605873 (-)
alpk3a LOC106561166 coding downstream 298387 73418615 ~ 73440795 (-)
znf592 znf592 coding downstream 353585 73378175 ~ 73385597 (-)
LOC110495933 zn710 coding upstream 18626 73768584 ~ 73775448 (-)
LOC110495977 NA coding upstream 260544 74010498 ~ 74014413 (-)
LOC110495986 LOC106561179 coding upstream 268561 74018519 ~ 74067110 (-)
LOC110501884 NA coding upstream 362020 74111978 ~ 74112847 (-)
LOC118941541 NA coding upstream 369108 74119058 ~ 74140876 (-)
G182903 NA non-coding downstream 35090 73703765 ~ 73704092 (-)
G182883 NA non-coding downstream 61636 73677279 ~ 73677546 (-)
G182881 NA non-coding downstream 63578 73675379 ~ 73675604 (-)
G182876 NA non-coding downstream 69992 73668955 ~ 73669190 (-)
G182841 NA non-coding downstream 107446 73600852 ~ 73631736 (-)
G183084 LOC106561177 non-coding upstream 231370 73981328 ~ 73987065 (-)
G183092 NA non-coding upstream 241382 73991340 ~ 73991675 (-)
G183098 NA non-coding upstream 244763 73994721 ~ 73995001 (-)
G183544 NA non-coding upstream 269301 74019259 ~ 74020096 (-)
G182882 NA other downstream 62759 73676212 ~ 73676423 (-)
G182708 NA other downstream 393335 73344950 ~ 73345847 (-)
LOC110495704 nrg4 other downstream 660803 73076020 ~ 73078379 (-)
G182494 NA other downstream 672458 73011478 ~ 73066724 (-)
c2cd4a LOC106561196 other downstream 865437 72833292 ~ 72877678 (-)
G183096 NA other upstream 243120 73993078 ~ 73993545 (-)
G183538 NA other upstream 356925 74106883 ~ 74110791 (-)
G184006 LOC106561202 other upstream 980914 74730872 ~ 74732637 (-)
LOC110496186 LOC106561212 other upstream 1856269 75595366 ~ 75607735 (-)
G186002 NA other upstream 2127401 75877359 ~ 75878060 (-)

Expression


Co-expression Network