LOC110495967 (LOC106573468)


Basic Information

Item Value
gene id LOC110495967
gene name LOC106573468
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73999269 ~ 74010559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571532.2
GATTGTATGGCAGTGAATAGAGTTCATAATTAGCGTGGGTAAAGTATTACCACCTCCAATTCTCAACTCTGGTTCGTGTCTTGGCGAAGATTTTGACCGCTGGTGCTGGATAAGGTGGAGATCAAATGGTCCAAGCTGTTGCTAGTCTATCGATCTTATTTTACACAAGGTATTATTTCCCTTGTAACTTTTAAACTCGAAATACGGAGCCATGGACAGACCCAGCCTCGAGAGACTGTTTTCAGCGTGTGACATTAACAGGTCTGGTGTGATTGAATACGAAGACTTTGCGGTTGTTTGTCGAGAACTCAATGTGCCTGACGACGAAATCAAAACTTTATTCAACAAATTCGGTGCTAGTGCAGATGGATGTATCAATTACAGCAAGTTCTCCTCTCGGTTTCAAGAGGTTTCAGCAACGTTGGATTTCGCATCTTTTGGGGCTTCTCCTCAAAGTCAAGGGAGTCCTTGGGACGAGTTCCAGAGCAGGCTTGACGATGCAACAGGTCACCTCTCGGGAAGACTGTGTGATCAATTGGCTGAGCTGTACCAAGCCATTTACTCCACCTCAGAACCTCTCTTGTTGCAACATTATGAGGGACTTGTTGATGCTCTTGTCAGTGAGAGCAAGGAACGCAGACTTGAGAGTGAGCAGGTGGAAACCAGTTTCAGAAGAACAGAGGAGCTCAACACAAGTCAGTTGGCAGAGCTGGAGGAGGACATGCAGCAGCAGCTTTCCCGTGTAGTGGACAGGGTGAGAGAAGAGGAGCTTAAGAAAATGGAGGGAGTCATGGATACACTCCAGAGAAGGCATGATAATGAAGTGGCAGATCTACATACTGCTGTGGACAGGTTGTTGAAGTGCCAAGATGAATCTGAACTCAACAATTCCAGGCAGGATGTTGACAAACTACACCACAAAATATGTGAACTGTCTCTGGAAAATGAGCAGTTACGGACTTCGCTCGTCAAAGCTCAGACAAACATCTCCATTCTGCAGGTAGAGATGGACAAGCTGAAGAACATTTATGCAGACCAGAAACTTCAACATGAGAGAGAAAGTGATGACCTGAAAAAGATGGTTATAGAATACCAGTCCTACTCCAGTCACATTGAAATACTCCAGGTCATGAACAAAAAGCTGTATGACTGCAATGATGACTTGCACTCTGCATTAATCAACGATGTGGCATCAAGTAAGAGGCTATCCCCCGACAATGAAATCGCAGCTCGAAGAATGAAGCCAGTTCGACAAAGCACACTTATAAATTCAGGGGGAGAGAACACAGCTGTGGACTCCAGTAAAAGGACCTACTCCCATGTAGCCAGCTGGGCTGATAGATACCTGGACAGTGGTGTGTCCCTGCCTATGGACGCTGAAAGCTCAGGCAGCGAGTCTGACAGTGACGTCTCGACAGAAACCGTACACCAGAGTTATTCATATGTGCCCTCAGACATTGAGATATCAGACGTGAAATCAGAAGTAAGTCGGGCAACACTGTCTGTATCTCCCAGAAAAACTCTCGCTATTGCTTCGTCCATCCGGAGACGCTTGTCTGCTTTCCCCATAAAGCCAACCGATGCAGACATTGTTGACACTGGTGGCCCTGCTCCCATGTACCGGTTAGTTTTGGCGGGAGATGCAGGATCAGGGAAGTCCAGCTTTCTATTGAGGTTGAGTCTCAATGAGTTCAGGGGAGACATTCAGACGACTTTGGGAGTTGATTTCCAAATCAAGAAGATGTTGGTGGATGGAGAAAAAACTAACCTCCAGATATGGGATACTGCAGGACAAGAGAGGTTCCGCAGTATTGCCAGGTCTTACTTCCGTAAAGCCCATGGAGTCTTACTGCTGTATGATGTCACTTCTGAGAGCAGCTTCCTTAATGTCAGAGAGTGGATGGGAGAGATTCAGGAATCTAGGGATGAGCAACTCCCAATGTGTGTGATTGGGAACAAAGTGGACCTGCGGGAAGATCGACCGGAGGGAAGCTGTGTCAGCACTGTCGACGGGGAAAGGCTGGCTAGAACATACAATGCCCTGTTCTGTGAAACTAGTGCCAAAGCTGGAACTAATGTAGTGGAAGCAGTACTTCACCTGGCAAGAGAAGTTAAGAAAAATGTGCAACTGAGACGGCAATCAGAATCACAGGTGAAGTTGAGTTTAAGTGTTCCAAAGAAAGCTAACTGCTGCAGAGTATAACCATGGAGACTCATCACCAGAGGGAAATGCATCTGACTGGAGTCTAGGGGCTCTATTTTAGCACCACAGCGTAGCTAAATATGTATAACAGACGACTGTAAAGTTAGCTAAATGTATGTCTAGTTCGTATTTGAATCTACATAGTCCGATCTTTAGCAATAGTCAACTCCTGATAAATGTATTAGTTCTGGACTCTCATGAACGTATTATAAATGGGACTGTTGTACATCTCTCAGGAATTGACATTGAAAAGCAATTAAGTTTTAGCTCAGTCTAGAGACTGCTGTGGTTAGAAACATGCAGAAATTAATCACATTTTACATTGGTGCTTTATTTCATGTTTgctaattgtatttttattgattAAAGTTTCTGTACAGGTGTGAA

Function

NR:

description
ras and EF-hand domain-containing protein-like isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K17199 RASEF, RAB45; Ras and EF-hand domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571532.2 True 2590 mRNA 0.45 17 73999269 74010559

Neighbor

gene id symbol gene type direction distance location
LOC110495946 LOC106561177 coding upstream 14532 73883551 ~ 73984737 (+)
idh2 LOC100194640 coding upstream 230738 73756972 ~ 73768531 (+)
LOC110495913 ankrd34c coding upstream 261540 73733395 ~ 73737729 (+)
LOC110501876 LOC106561170 coding upstream 421089 73456669 ~ 73580075 (+)
trnah-gug-2 NA coding upstream 543766 73455432 ~ 73455503 (+)
LOC110495989 LOC106573469 coding downstream 59405 74069964 ~ 74110824 (+)
LOC110495996 LOC106561183 coding downstream 115664 74126223 ~ 74139502 (+)
LOC110496029 LOC106561185 coding downstream 167924 74178483 ~ 74198686 (+)
LOC110496053 LOC106561188 coding downstream 199904 74210463 ~ 74221530 (+)
LOC110496089 LOC105018423 coding downstream 509217 74519776 ~ 74529599 (+)
G183101 NA non-coding upstream 2043 73996704 ~ 73997226 (+)
G183100 NA non-coding upstream 3326 73995682 ~ 73995943 (+)
G183099 NA non-coding upstream 3665 73995155 ~ 73995604 (+)
G183091 NA non-coding upstream 7629 73991365 ~ 73991640 (+)
G183089 NA non-coding upstream 8208 73990537 ~ 73991061 (+)
G183108 NA non-coding downstream 5032 74015591 ~ 74015797 (+)
G183117 NA non-coding downstream 5455 74016014 ~ 74016360 (+)
G183119 LOC106561179 non-coding downstream 7614 74018173 ~ 74034081 (+)
G183152 NA non-coding downstream 50337 74060896 ~ 74129871 (+)
G183168 NA non-coding downstream 130788 74141347 ~ 74141645 (+)
G182144 NA other upstream 374751 73622536 ~ 73624518 (+)
G182139 LOC106561173 other upstream 389032 73606892 ~ 73610237 (+)
G181995 NA other upstream 656992 73341380 ~ 73342277 (+)
LOC110533853 LOC106561194 other upstream 1745542 72250884 ~ 72253809 (+)
G183361 NA other downstream 519090 74529649 ~ 74535026 (+)
LOC110496107 LOC106561202 other downstream 701022 74660359 ~ 74732682 (+)
LOC110496116 LOC106561204 other downstream 875539 74828267 ~ 74890826 (+)
LOC110496136 LOC106561223 other downstream 1026693 74991655 ~ 75145608 (+)
LOC110496459 LOC106561246 other downstream 2157098 76167573 ~ 76181555 (+)

Expression


Co-expression Network