LOC110495989 (LOC106573469)


Basic Information

Item Value
gene id LOC110495989
gene name LOC106573469
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74069964 ~ 74110824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571589.2
ACAGAGAATGTCGCCAATTTACCTCAGTTGTAGACATGGCAGCGCTGAGACAGGAGCATCGGTATGGGCTCTCCTGTGCAAAAATCAACAAAAACGTTCAAAATAAAACTCTGTATCACGTCAAGCTAACTGATACCGCCATTCGAACGCTTGAAGCCTACCAAAATCTTAAGGGATCCTTACCAAATCAGCCAGCAATTTGCTTCAAGGGGAGCCAGGGGTACATCAAGATCCCCGCCCCGTCCCCAGATGCCTCGGACGCACTACGGGTCTTCTCCTTCTACCTGTCCAGTGATAGCAAGGACAAACCTCAGGCCAGCTTCGACTGCACACACCAGTATGTCTCAAGGGAGGGCAGGGAGCACCTGGAGGGCCAGGGCAGTATTCAGGACAAGATCACTGTGTGTGCCACTGATGACTCGTACCAGATGACCCGGGAGCGCATGTCTCAGGTGGAGAAGGACATCATGAGCAGGTCGGCCATCGAGATCAAGCCAGGCTCCACTCGTGGTAAATGTGTGAAGATCCAGAGGAAGCAGGGCCTGTCGTCAAGCAtggacagcagcagcaacaagcaCTCCCCCAGCAACAAGAGGAGCGGGGCCCCCAGCCCAGTGGCCCTCCGGCCCCTAAGAGACCGCATCATCCACGTCTTGGCCTTGAAGGCCTACAGGAAGCCTGAGCTGCTGCTGtggctggagagggagagggccagTCCTAAGGACAAGGCTGATCTGGGAGCAGTACTGGACGATGTTGCTAAACTGAATCCCAAAGACCACAGCTTTACTCTGAAGGATGAGTTCTACAGTCATGTCCAGAAGGATTGGCCCGGTTACCTAGAGGAAGAGAAGCAGCTCATCCATAGGCTCCTGGCCAGGAAACTGCAGCCACTGAGCAGCAGTAGCCAGTTGAAGAGTTTCCAGTCAAACCATTCATTCCACAAAACCCCTGGGGATTCTCCGTCACAACTCAGCCCGGTCAAAACTCCCTCTGTGAAACGCCCATTTCCCTCTGAGCTATCTGATTGTCAGACCCCCAAGAAGCAAAGACTATTAGACCACAGTTTACCCCTGCAGTCCCTTTCCAATGGACACCTTGGTCCCATTGGAGCCCGTAGCTCATCTGGTCCAGGCAACACCAGTGTACAGACCAAAACAGAGTTTGAGAGAACCAACAATCACATCCAGGGAAGCCCTAATGGTCTCTACACACGGCACAAACTGGATGGTTCCTCCAGCATTCCCAAGCTGGAGAGGACCGAGCCGGTCCCAGCAGTACCAAGCCCCAAGGCCCCACAAACAGAGCCCTCCATCTGCACTGACCAGCAGCTAGCCAACGGCCAGCACAAAAAGAAGAAGTCCAAGAAGCACAAAGACAAGGAACGGGAGCACTTAAAACAAGACTGGATAGAGAACAGTCCCGACCTGAAGCAGAACCAGGAACATTTCAATGACCATGAGGGGGCTAAAACACCTGTCACTCGTACTTCACCGGAAGAGCTGCCTGACTATTTCATGGAaaatggaaagagagcctgtgGCACAACTTCCACGTTGGACGTTAACAAGGCGACACGCCATCTTAACTTAACCACATTTACTGGTTTGGTTGAACCTCCCCTGATAGTTTTTTATTCCTCTAATCAAGATCATTATGTAGGGATCTAGTTTAAGGTGTTTATTTTACACCTGCTACGTGGCATAAAACATGCAGGGATGGTTTAGATTATTATATGGAAACTATATTtaatctccaatgtttattgaaaacgtAAATAAATGTCAACAATGAGCAGTTGTTTTCTCTCAAATACTGTATATTCTGTATATTTCTGGCTGtactttggacactgtgttaacaaacctccagacgagcttcaatgccttacaactctccttccgtggcctccaactgctcttaaatgcatg
>XM_021571578.2
AGAGAATGTCGCCAATTTACCTCAGTTGTAGACATGGCAGCGCTGAGACAGGAGCATCGGTATGGGCTCTCCTGTGCAAAAATCAACAAAAACGTTCAAAATAAAACTCTGTATCACGTCAAGCTAACTGATACCGCCATTCGAACGCTTGAAGCCTACCAAAATCTTAAGGGATCCTTACCAAATCAGCCAGCAATTTGCTTCAAGGGGAGCCAGGGGTACATCAAGATCCCCGCCCCGTCCCCAGATGCCTCGGACGCACTACGGGTCTTCTCCTTCTACCTGTCCAGTGATAGCAAGGACAAACCTCAGGCCAGCTTCGACTGCACACACCAGTATGTCTCAAGGGAGGGCAGGGAGCACCTGGAGGGCCAGGGCAGTATTCAGGACAAGATCACTGTGTGTGCCACTGATGACTCGTACCAGATGACCCGGGAGCGCATGTCTCAGGTGGAGAAGGACATCATGAGCAGGTCGGCCATCGAGATCAAGCCAGGCTCCACTCGTGGTAAATGTGTGAAGATCCAGAGGAAGCAGGGCCTGTCGTCAAGCAtggacagcagcagcaacaagcaCTCCCCCAGCAACAAGAGGAGCGGGGCCCCCAGCCCAGTGGCCCTCCGGCCCCTAAGAGACCGCATCATCCACGTCTTGGCCTTGAAGGCCTACAGGAAGCCTGAGCTGCTGCTGtggctggagagggagagggccagTCCTAAGGACAAGGCTGATCTGGGAGCAGTACTGGACGATGTTGCTAAACTGAATCCCAAAGACCACAGCTTTACTCTGAAGGATGAGTTCTACAGTCATGTCCAGAAGGATTGGCCCGGTTACCTAGAGGAAGAGAAGCAGCTCATCCATAGGCTCCTGGCCAGGAAACTGCAGCCACTGAGCAGCAGTAGCCAGTTGAAGAGTTTCCAGTCAAACCATTCATTCCACAAAACCCCTGGGGATTCTCCGTCACAACTCAGCCCGGTCAAAACTCCCTCTGTGAAACGCCCATTTCCCTCTGAGCTATCTGATTGTCAGACCCCCAAGAAGCAAAGACTATTAGACCACAGTTTACCCCTGCAGTCCCTTTCCAATGGACACCTTGGTCCCATTGGAGCCCGTAGCTCATCTGGTCCAGGCAACACCAGTGTACAGACCAAAACAGAGTTTGAGAGAACCAACAATCACATCCAGGGAAGCCCTAATGGTCTCTACACACGGCACAAACTGGATGGTTCCTCCAGCATTCCCAAGCTGGAGAGGACCGAGCCGGTCCCAGCAGTACCAAGCCCCAAGGCCCCACAAACAGAGCCCTCCATCTGCACTGACCAGCAGCTAGCCAACGGCCAGCACAAAAAGAAGAAGTCCAAGAAGCACAAAGACAAGGAACGGGAGCACTTAAAACAAGACTGGATAGAGAACAGTCCCGACCTGAAGCAGAACCAGGAACATTTCAATGACCATGAGGGGGCTAAAACACCTGTCACTCGTACTTCACCGGAAGAGCTGCCTGACTATTTCATAAAGTACAACATCATCACAGCCTCAGAGCAACGGCAACAGTACAAGGAGGATTTCTGTGCAGAGTATGATGAGTACAGGGCCCTGCATCACCGGATCGGTACAATCACAGAGATGTTTGTTCAGCTGAGCTCAAAGATCAACACTCTCTCCCCCGGTACACAGGAATACAAGCTCATGGAGGACCAAATCCTGCAGAAATACAGAAAATATAAGAAAAAGTTTCCTGGTTACCGGGAAGAGAAGAAGCGATGCGAGTATCTGCATCAGAAACTGTCTCACATCAAAGGTCTGATCCTGGACTATGACCGTATCCAGGCCCCTTCATAGTGACTGGCCTGCACCCTGCTGCCACAGGGTGCTATTTTATCAACGGACCAAAAGACTGACCAGCCGAGCCTGGGTCTGGAGTGTTTAATCACATATGAATCACACATTCACTTTATTCCTCCAAGTGttgatggaagagaggagagaggttctCTTATATGAAGTGGGCCAAGACCAGCGACTCGTGATCAAATGAATCATTTTTTGAGGACGAGTGTTGTTGTAATGGCTGGCAATTTAAGCCAAATTCCTTTTTCTACCCATAATGTTAATGTACGTGAACTCTCCTGCCCAATGCTTTTAACGTTTGGTCTATTGCCATGACTACACAGAAAGACTTAGTTTGATGGTACAATCATAAGGACAGATGAGAATAAATGCTCTTCACACCCAGTCTTCTATCCATGCTATATTTAAGTACCCAGTACAATTTGCGGTTTGTTGTTTCACTGAATGTATAGATGTAAAATAGTGATATAAGATCTTGATTTCTATAGAGAGGGTTGTAATCACTGGATTAAGATTAGGGGACGCTGGAAGATATGCAATGTTATGTGGAAATATCTCAGACCTCTATGAACAAGAAGTGAACTGTTTGAGTTGATAATTTCTCTATTTGTTAAAGTTGATgatacagtacatgtcattaatcaGACATGCCAGTCAAATCGCCTCTGACCCACATTTCACGTTCAGTCTGTAGTTCCTGTTTACAGTAATTGAGCCATTCTGCTTCATCAAATATGGGCCATGGGATTGGAAACAACTGCCCCCTCAATGCTGAAGAAAATGTTTATGAATCTTGATATTTGTATGATATAGTAAAATGCCATCTTAGTCATACAGTATACTCCCATGTTTCTGTTTAAACCACTACATTACTGAAAGAACACTAATCTGAATAAGAACTGCAATCAAACGCCAAAGTAATATTTTTGGATTGTTATGGCATTCTATTACCTTCTTATCCTTCTGGATAAATTATTCTCATTGTTTGAGCCAGTATTCTCTGACCTTTTGATGATAGTAATACAGTTCATACAATATTAATGAATATTTTATTACCTTGATCAATAGTCCAATACATTTGTGAGACTGAGTGGAATGCCAGAGCATTTAACAGTACTTCCAAAAGCCATTTTTATATTACAAAGCTTGTGCCTGTGTGATGTATTCTATCAGCCCAGCAAGAAACAGGATTGCTTCCGTGCAGTGATGAAATTCAATATTTTGAAGCTTTTGGTGTCTTTGGATTTCAACCTGGTTTAGGTTCGATAGATCAGAGATGAATCATAGTTCAAAGATGAGATTTGTGTGAACTTCTTCACTCTTGCTGTTGAAACTGCTCTGTAGGaaaatgctgtggtaaccattgGTAACATTGTATTTCTTAATGTTGCTGTAGCAGTCTACTAGATTTCACCTCAGCAAGATGGGACAGTTTATTTTCAGTTTGAATCAGTGAATGTTCCATTACAACATTGGGCTACTGGGTGTGTTTGTCTACAGTAGATGCATTTACACAAACTGGACCACATTAACTGAACCTCTCTGGGTGTACCTGTCGTCATCACTTGGGATTTCATACAGTTCACTTTGATTATCTGTGGCTTGAAGACATATATTTTTTCAAATACAGTGACTACTCGTAAGCAGTAATGAAATCAACGTGAGTGTCTGTGTACACTATCTTGCTACTTAATTGCTGTCTTAAATGTAAAGGGAAGATAGTTCATTTTGCCTTAACACACCATTAACACATTTTCATGTCTCTGATATTGACTTTCTGAAACGTAATGTAATCTCTCTTTTTTTAATCTGCTCAATTTAATATAATGTTTTAGGATCATGTATTTTAGTTCACATTTTTGGGGGTTGAAGGAAATGCATAATTTATGTTAATATATAATGCTTTCAATACTGCGTCTTATATGTCTGCACGTCTTTTTACATTGTTGATCTATTCCTCTACCATGTGAGTTGGGGCTCGATTCAATCAGATCTGCTTTAGCGAACATCCGCATAGCGTTTGTTTTGACGGTCTGTGAGTTGGGGCTCGATTCAATCAGATCTGCTTTAGCGAACATCCGCATAGCGTTTGTTTTGACGGTCTGTGAGTTGGGGCTCGATTCAATCAGATCTGCTTTAGCGAACATCCGCATAGCGTTTGTTTTGACGGTCTGTGAGTTGGGGCTCGATTCAATCAGATCTGCTTTAGCGAACATCCGCATAGCGTTTGTTTTGACGGTCTGTGAGTTGGGGCTCGATTCAATCAGATCTGCTTTAGCGAACATCCGCATAGCGTTTGTTTTGACGGTCTGTGAGTTGGGGCTCGATTCAATCAGATCTGCTTTAGCGAACATCCGCATATCGTTTGTTTTGACGGTCTATGAGGTGGAgctgttagagctgtcaaatccacaagtggctcccTGCATTATAGATAAAGCCAACATTGCATTTGACTACACGGAGTCGCATTAACAGAAATCTCATGCCGTCTTGTTTACACGATGGAACAGTGTAACGTGTAATGTAATCTGCACCTTGATTATGATGATAGAAACCCTCATTATTTAGTTTAACGATTTTTCAAGTTGAGCGTCATTATTCCTGTATAACCTACACTTTCTCCTTCTGAACATCTAACGCGAGTGGGGCGGTTGTGGCTTTGTGACAATGGTTGCAAGAGCAGCCACAACATCTGTCTGAGAGGGCCACAACATCTGTCTGCTGTCACCGCTTAACGCTTGATccgattgaatctaggccttaatTATTTTGTGTTTGTGATAGGTTAATTTCTGTTCGTTTCCCTCATGAGTGCTCTGTGGATAACTGTTTGATAATCATGAATGGAGTATAGAAAATGAATTGTGACTATGTTAAGGGCCTTTTTTTTCATCCATTACCATTCTTCACCACTGTTTCAGAGCTCCGTATAGAAACATGTCTGAAAGGTCTCTCAGAAGTGCTTGACTGGGCTAGATTCATCCCTGACATGTACACATAGTGGAAGTTTTCTGTCACAGTTTgggttctttttttattgttgAATTCTAAATGTAATAAATTAAATATATGCTACTGACTGTGGTATTCTGGAAAGCACATGACCAGATATGAGACTAGTACAGACcactgtctctgtgtgcagtATTGGACTGAGCCATATTCATCTGAATAAGTGCTAATTGTGATATACGCAGGAGTTAGCGAGGTGCCTTCTAATAGGAAAATCTGAGTCACATTGGCTTTAACATAATGTTATCTTTCATAATTGATTTGATTGCATGATTCAGGTGAAACAAAATATATGTACTCAAATTATTGGTCCCTAAATTTTATTTTTCATGTGTAGGACTACAGCTTTGTGGCTAAAGGTCCTTGAAAACTGTTAAGACATCCACAATGTGCTCTTGAAATGCAAAATGCCATTTAATGTGCATATTGCTTACAAATCAAACAACTCTagaatatttttttgtttattgtctCGCTGTTGCTGGTGCATTTACTTTGTTGATATTGGTAAATTAAATGTCTCAATAGAAATGTGAAATAAAATCTCTTGTCTAGTATAAATCACTACAGATTGTCGACTTTTGAGAACAAATTTGTGTAactattcttttttttttgcttccTTCTTTGCCCAATTTCCTCAATCTATTCAAGACAGACAAGAAGCCTCTACTTGACGAAAggtaaatgtaatatatatatatatatatatatatatatatatatatatatttgcaattGTCTGTGAGGGATGCTTTATCACCAACTTTTCCTCTAGAAAAATACTACAAAATGTATTAATGTctctgaaaaaaaaaataaagctCTTTTCATCAATAA

Function

NR:

description
RNA polymerase II elongation factor ELL2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571589.2 False 1931 mRNA 0.50 10 74069964 74104249
XM_021571578.2 True 5709 mRNA 0.42 12 74069966 74110824

Neighbor

gene id symbol gene type direction distance location
LOC110495967 LOC106573468 coding upstream 59405 73999269 ~ 74010559 (+)
LOC110495946 LOC106561177 coding upstream 85227 73883551 ~ 73984737 (+)
idh2 LOC100194640 coding upstream 301433 73756972 ~ 73768531 (+)
LOC110495913 ankrd34c coding upstream 332235 73733395 ~ 73737729 (+)
LOC110501876 LOC106561170 coding upstream 491784 73456669 ~ 73580075 (+)
LOC110495996 LOC106561183 coding downstream 15399 74126223 ~ 74139502 (+)
LOC110496029 LOC106561185 coding downstream 67659 74178483 ~ 74198686 (+)
LOC110496053 LOC106561188 coding downstream 99639 74210463 ~ 74221530 (+)
LOC110496089 LOC105018423 coding downstream 408952 74519776 ~ 74529599 (+)
LOC110496107 LOC106561202 coding downstream 549535 74660359 ~ 74732682 (+)
G183119 LOC106561179 non-coding upstream 35883 74018173 ~ 74034081 (+)
G183117 NA non-coding upstream 53604 74016014 ~ 74016360 (+)
G183108 NA non-coding upstream 54167 74015591 ~ 74015797 (+)
G183101 NA non-coding upstream 72738 73996704 ~ 73997226 (+)
G183100 NA non-coding upstream 74021 73995682 ~ 73995943 (+)
G183168 NA non-coding downstream 30523 74141347 ~ 74141645 (+)
G183175 NA non-coding downstream 44422 74155246 ~ 74155558 (+)
G183176 NA non-coding downstream 45020 74155844 ~ 74156345 (+)
G183177 LOC106561186 non-coding downstream 45798 74156622 ~ 74226257 (+)
G183182 NA non-coding downstream 62811 74173635 ~ 74177682 (+)
G182144 NA other upstream 445446 73622536 ~ 73624518 (+)
G182139 LOC106561173 other upstream 459727 73606892 ~ 73610237 (+)
G181995 NA other upstream 727687 73341380 ~ 73342277 (+)
LOC110533853 LOC106561194 other upstream 1816237 72250884 ~ 72253809 (+)
G183361 NA other downstream 418825 74529649 ~ 74535026 (+)
LOC110496116 LOC106561204 other downstream 775274 74828267 ~ 74890826 (+)
LOC110496136 LOC106561223 other downstream 926428 74991655 ~ 75145608 (+)
LOC110496459 LOC106561246 other downstream 2056833 76167573 ~ 76181555 (+)

Expression


Co-expression Network