LOC110496007 (LOC106561184)


Basic Information

Item Value
gene id LOC110496007
gene name LOC106561184
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74122283 ~ 74126209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955467.1
CTAACTGTGGCTTTCAAATGAACACTAACGCTACTGGAGAACATCACGGGAGTCTTTATGGGTTTGGATGCTGCAGGGAAAACTACTATCTTGTACAAACTGAAGCTGGGAGAAATAGTGACCACCATTCCAACTATcgGCTTTAACGTGGAGACGGTGGAGTATAAGAACATCTGCTTCACAGTATGGGATGTGGGTGGTCAGGACAAGATCAGACCCCTCTGGAGACACTACTTCCAGAACACACAGGGTCTGATCTTTGTAGTAGACagcaacgacagagagagagtggccgAGTCTGCAGAGGAGCTCTCTAAAATGctccagGAGGATGAGTTGAGAGAAGCGGTGTTGCTGGTGTTTGCTAACAAGCAGGACCTTCCCAATGCTATGGCCGTCAGCGACCTTACAGACAAACTGGGACTGCAGAGCCTCCGCAGCAGAGTGTGGCACGTGCAGGCGACCTGTGCGACCCAGGGCACAGGACTGTATGAAGGACTGGACTGGCTTTCCAACGAGCTGTCCAAGCAATAACACCGGACATCACacaagagaaaaggagagggagaaccACAGACTGACACCTTCAATCAAGACAAGTTTGGTCTTGAATAACTTGTGCCCCTAGAATGGACAGGACTTGTGGACAATGCAATCAATACATATAGGAACATCTTATTTTACTACTATTTTTACTTCGCTTTCTTTGACCATTATCCCTTTATATACTCTAATCTTCACTTTTTCCCCCACCTCATATCTTGCAGTAGATAAACTGATGCTTTCAGTTGCATGTTTAGCAAATGGCTGCTCTGAGACACCATGGAGACGCCCCTTCCTCTGTAAAGTGTTCTGCTGGGTTGACGTTACCCCCAACCACTGATCCTGGGTCAGACCTTTAAATCTGCCTATGGTTAAGTATCAGGATTGAGGGTGttgtaatctgatcctagatctgtggttaagggAAACTTCTACTGCAACCTGTTCAGCTACACTAGACCTCATGGACATTTTCACTGAAACAACCCTGGTCCTATACCTCTCACCCCTGTGACTTCACTCCCATGCGATATCACCTATGTAAGGGACTGAAGCTTCTAGAATGAGATGAAGAATAAAATGACAATGAAGTCATAAATCTCCAGATGTTTGAGGAAGTCTTTCTGCACTGGGAGCCAAATGGAACTCCTACCAGTGAATGGAACACAATGGAACCACTGGAAACAGTTTGCTCCTGGTACTACTGGTTTTCGCCATCTCTTTGTAGGGTTGCTTTGCCCTGGGCTCGCCACATAAAAAAAGAGATGCTTGACTaatgtcttttttttctttttttaaatgggcCACAATTATGTAATAACCCATTTCCTTATGTGCTACGATGTAAGCTGTGGGAAGCTGAAATTAGTAGGTAGAAGTTGCCACTAAACATTGAAACAGGTGTTTGATACTTTTCCATCCGCCTAATGATTCAGGCTAGGATGGTTAATCTGATCCAGGATCTGTGTATAGTGTAACTTCTACCACAAATGAGCTGAAACCACTTACATTTTTTTGTCTAGTCTAGTGAGAATGTGCACCTCCTAAACAAGACTGTGGCCCTGTTCTAATACTTAGGTGCTTTCTTCCCTCTCGGCCATCTTTGAAGTTATTACATATCTGAAGTATTGGCTTTAAATAATGGTGTCAATGAAGGAAGGAAAGGGAAGAAGGCTGAAGGATGTGTTTTCTAAGCATTGGAACCAGGCCAATATTGGTGTTGTATTGTTCAGTGGCATGCTTTGGCTCAGCAGTGCTTGCTTGTGGCTGGGCACACTCTTATGATATTTGATGGCTGTTGTTGTGTGCTTAATCTGACCCTCCCCCACACACCCCTGCTGTATCTCCCTGAGCTGTGCATACATTCCAACTGACGGATGCTTCTTGAAACTGCATAAAGCTGCCACAACTTTTGAATGATGTGATAACTAATTGTTTTACAAAACATGTATAAATAAATTCACCTGTTAAATTGTCTTTTTCTGAGAATTTAACTTTAAATTGA
>XM_021571622.2
ATGACGTCGGGAGTTCCACGTTGGCCCGGACGTGGCAGCATCAGAGGACAGAAACGATTCTTGCTTGGGAGTCACAAACAGAAAGATTCAGACCATTTGTCTCAAAAACGACAAGAATTTAGAAAAGTTTCTGTAATAATTTGAGACATTCACGCACAACATGGGGCTCCTAATCTCGTCAGTTTTTACCAGACTGTTCGGCAAGAAACAGATGAGAATACTTATGGTGGGTTTGGATGCTGCAGGGAAAACTACTATCTTGTACAAACTGAAGCTGGGAGAAATAGTGACCACCATTCCAACTATcgGCTTTAACGTGGAGACGGTGGAGTATAAGAACATCTGCTTCACAGTATGGGATGTGGGTGGTCAGGACAAGATCAGACCCCTCTGGAGACACTACTTCCAGAACACACAGGGTCTGATCTTTGTAGTAGACagcaacgacagagagagagtggccgAGTCTGCAGAGGAGCTCTCTAAAATGctccagGAGGATGAGTTGAGAGAAGCGGTGTTGCTGGTGTTTGCTAACAAGCAGGACCTTCCCAATGCTATGGCCGTCAGCGACCTTACAGACAAACTGGGACTGCAGAGCCTCCGCAGCAGAGTGTGGCACGTGCAGGCGACCTGTGCGACCCAGGGCACAGGACTGTATGAAGGACTGGACTGGCTTTCCAACGAGCTGTCCAAGCAATAACACCGGACATCACacaagagaaaaggagagggagaaccACAGACTGACACCTTCAATCAAGACAAGTTTGGTCTTGAATAACTTGTGCCCCTAGAATGGACAGGACTTGTGGACAATGCAATCAATACATATAGGAACATCTTATTTTACTACTATTTTTACTTCGCTTTCTTTGACCATTATCCCTTTATATACTCTAATCTTCACTTTTTCCCCCACCTCATATCTTGCAGTAGATAAACTGATGCTTTCAGTTGCATGTTTAGCAAATGGCTGCTCTGAGACACCATGGAGACGCCCCTTCCTCTGTAAAGTGTTCTGCTGGGTTGACGTTACCCCCAACCACTGATCCTGGGTCAGACCTTTAAATCTGCCTATGGTTAAGTATCAGGATTGAGGGTGttgtaatctgatcctagatctgtggttaagggAAACTTCTACTGCAACCTGTTCAGCTACACTAGACCTCATGGACATTTTCACTGAAACAACCCTGGTCCTATACCTCTCACCCCTGTGACTTCACTCCCATGCGATATCACCTATGTAAGGGACTGAAGCTTCTAGAATGAGATGAAGAATAAAATGACAATGAAGTCATAAATCTCCAGATGTTTGAGGAAGTCTTTCTGCACTGGGAGCCAAATGGAACTCCTACCAGTGAATGGAACACAATGGAACCACTGGAAACAGTTTGCTCCTGGTACTACTGGTTTTCGCCATCTCTTTGTAGGGTTGCTTTGCCCTGGGCTCGCCACATAAAAAAAGAGATGCTTGACTaatgtcttttttttctttttttaaatgggcCACAATTATGTAATAACCCATTTCCTTATGTGCTACGATGTAAGCTGTGGGAAGCTGAAATTAGTAGGTAGAAGTTGCCACTAAACATTGAAACAGGTGTTTGATACTTTTCCATCCGCCTAATGATTCAGGCTAGGATGGTTAATCTGATCCAGGATCTGTGTATAGTGTAACTTCTACCACAAATGAGCTGAAACCACTTACATTTTTTTGTCTAGTCTAGTGAGAATGTGCACCTCCTAAACAAGACTGTGGCCCTGTTCTAATACTTAGGTGCTTTCTTCCCTCTCGGCCATCTTTGAAGTTATTACATATCTGAAGTATTGGCTTTAAATAATGGTGTCAATGAAGGAAGGAAAGGGAAGAAGGCTGAAGGATGTGTTTTCTAAGCATTGGAACCAGGCCAATATTGGTGTTGTATTGTTCAGTGGCATGCTTTGGCTCAGCAGTGCTTGCTTGTGGCTGGGCACACTCTTATGATATTTGATGGCTGTTGTTGTGTGCTTAATCTGACCCTCCCCCACACACCCCTGCTGTATCTCCCTGAGCTGTGCATACATTCCAACTGACGGATGCTTCTTGAAACTGCATAAAGCTGCCACAACTTTTGAATGATGTGATAACTAATTGTTTTACAAAACATGTATAAATAAATTCACCTGTTAAATTGTCTTTTTCTGAGAATTTAACTTTAAATTGA

Function

NR:

description
PREDICTED: ADP-ribosylation factor 4-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07939 ARF4; ADP-ribosylation factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955467.1 False 2047 mRNA 0.44 6 74122283 74125960
XM_021571622.2 True 2216 mRNA 0.44 6 74122283 74126209

Neighbor

gene id symbol gene type direction distance location
LOC110501884 NA coding downstream 9436 74111978 ~ 74112847 (-)
LOC110495986 LOC106561179 coding downstream 55173 74018519 ~ 74067110 (-)
LOC110495977 NA coding downstream 107870 74010498 ~ 74014413 (-)
LOC110495933 zn710 coding downstream 346835 73768584 ~ 73775448 (-)
si:ch211-107o10.3 LOC106561176 coding downstream 372325 73739182 ~ 73749958 (-)
LOC110496015 LOC106561186 coding upstream 30864 74157073 ~ 74167350 (-)
LOC110501892 LOC106561189 coding upstream 115028 74241237 ~ 74433222 (-)
LOC110496063 LOC106561200 coding upstream 326323 74452532 ~ 74473316 (-)
LOC118937295 NA coding upstream 375205 74501414 ~ 74508105 (-)
LOC110496093 LOC106561201 coding upstream 407076 74533285 ~ 74594426 (-)
LOC118941541 NA non-coding downstream 2015 74119058 ~ 74140876 (-)
G183544 NA non-coding downstream 102187 74019259 ~ 74020096 (-)
G183098 NA non-coding downstream 127282 73994721 ~ 73995001 (-)
G183092 NA non-coding downstream 130608 73991340 ~ 73991675 (-)
G183602 NA non-coding upstream 14828 74141037 ~ 74143053 (-)
G183631 NA non-coding upstream 18376 74144585 ~ 74144786 (-)
G183672 LOC106561185 non-coding upstream 70663 74196872 ~ 74198670 (-)
G183601 LOC106561188 non-coding upstream 89108 74215317 ~ 74221649 (-)
G183538 NA other downstream 11492 74106883 ~ 74110791 (-)
G183096 NA other downstream 128738 73993078 ~ 73993545 (-)
G182882 NA other downstream 445860 73676212 ~ 73676423 (-)
G182708 NA other downstream 776436 73344950 ~ 73345847 (-)
LOC110495704 nrg4 other downstream 1043904 73076020 ~ 73078379 (-)
G184006 LOC106561202 other upstream 604663 74730872 ~ 74732637 (-)
LOC110496186 LOC106561212 other upstream 1480018 75595366 ~ 75607735 (-)
G186002 NA other upstream 1751150 75877359 ~ 75878060 (-)
tnni1c LOC106561253 other upstream 1858950 75985156 ~ 75989573 (-)
adm2b adm2 other upstream 1966961 76093170 ~ 76099909 (-)

Expression


Co-expression Network