LOC110496015 (LOC106561186)


Basic Information

Item Value
gene id LOC110496015
gene name LOC106561186
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74157073 ~ 74167350 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955486.1
CAATGAGCTGTTTGCATTGTTTGTTGAAATAAATTCTATGCAATCTGATGTAGCTCATGGAATGGATGTTTCTTTTGTATTATATGTTTTGTTGAGTTGATGTTTAAATGGCTGCCGGTCCACAGTTATGGAGCTTTGACTTGAAGGGTTATGGCTGTTCTAGTAAATGTCATTCAATCTCAAACTTACAATAagaaagttctctctctctctatggttgTGACAGACCACTTGTAGCCCCTCTGCTGGCCAGACCTGGTATCTGATACGTGAGTTCAGATCCAGGAAGTGAAATGTTATATGGGTTAGTGGGAGCCACTCCTAAGCCTACTCCTCAGCACAATTGGAAACGAAACTCATCTCTTCAGCTCAGTCTGCTTGCGTTTCAAAATGGCAGAAGCCATGGACTCAATCAGTTGTTCAATCTGTTTGGAGATACTGAAGTATCCAGTGACTATTCCCTGTGGACACAGCTACTGTATGGACTGTATTAAATGCTGTTGGGATCAGAAGCTTGTCTGCAGCTGCCCCCAGTGCAGACAGATCTTCCCTACAAGGCCTGTTCTGAACAAAAACACTGTCATTGCAGAATTGGTGGAAACACTGACAGAAATAAATATGAAGAATATACAGGAGGTGAGACTTAAGGCAGCAGTGGAGGACAGTGAGGGGCTGTCAAAGATGAAGGTTGTTTCACCTCCTGACCCCAATACCAGAGAGGAGTTTTTGAAATATTCCTGCCAGCTCACATTGGACCCCAACACAGCTAATAGATATCTGCGTCTGTCTGAGGGGAACAGGAAGGTGACCAGGAGTGAAAACGCTGAGTCCTATcttcaccatccagacagatttaACTTCTACTGCCAGCTGTTGTGTAAAGAAGCTTTGTCTGGAACCTGCTACTGGGAGGTAGAAAGGAGTGGAAGCAAGTGTAAAGTTGCCGTGTCTTATAAAGGGATCtgcaggagaggagatggagtggATGTTAGCTTTGGACGAAATTATCAGTCCTGGACTTTGGTCTGTGATCCGTCTATCTGCTATTTCAGGCACAATAATATCAATACTGATATCCCTACCCCCTGCTcctccagagtaggagtgtacctgGACCACAAGGCAGGaactctgtccttctacagtgtctctgacaagatgaccctcctccacagagtccagaccacattcactcagcccCTCTACCCTGGATTCTGGGTTGGTCCTGGTTATGGATCATCTGTGAAGATACTGACACCAATATAGTAAATTAACAAAGTTTTATCTACACTCATTGACTTTCAGTGTGTTCATAAGCATCGTAAAATCTTTTTCAGCCTGACACAATAACATAATACCTTCACACTATTCAGAGGATGCAGTCCATTTCAATGAAATGGATTTACTCTGTTAGACATCAGCTTTGCACAAGCTCCATTGACAATGAGTTGTTTGCATTGTTTGGAAAGAAACACATATTTATCTACACTTATTGACTTTCACTGTGTACATATACATCATGCAATCTGTTTCAACCTGACAGACTTAACATTATTTTATGATACAAACTGCTGGTGAATGCACAACATGTGCACTACTGTTAAAATATGAACTGTCCACAGTCTATGTCACTGAAAGGGATTGATTCTAATGTTAGGCATCAGTGTACACAAATTactataccctgttcaaaggcacttaaatattgcccattcaccctctgaatggcacacatacccaatacatgtctcaaggcttaaacatccttatttaatctgtctcctccccttcatctacactgattgaagtggatttgacaAGTGACACCAAAAGGgatcattgctttcacctggattcacctggtctatGCCATGGATAAAGCACTTGCATTTCAAAATGGCAGATGCCATGGACTTGATCAGTTGTTCAATATGTTAGGAGATACTGAAGGATCCGGTGACTATTCCTTCTGGACACAGCTACTGTATGGACTGTATTGAAGGCTACTGGGATCTGGATGTCCAGAAGCTTGTGTGCAgctagcccttgatcatgactctctgttgcattacattacacataaaagTCATTGGACGGTGCCGTTATCTGTAGGGGGAAGAGAGCCATGACGCTCTTTCCGAACATTATCATGAATCATTTGCGGTAcagttttggaagcataaggaccttGTATTTCACATCGGCAATAAATTATTTTCAAAAAACAAAAGATTAAATTGATGCACAATTTTATAGGGTTAGGATTCCCACACGGACAACAGACGGAAGACCAACTGgactacctgtgctaattagctatatGCGTCTTTCGAACACCTGTGTATAAATGGAAGATGGAGGCCACAAACGTGTTGTCCCTGAAAAATACTGTCAGCTACAACTGTGTTAAAACCGATTAAAACAGTATACAGTGAG
>XM_036955490.1
AATGAGCTGTTTGCATTGTTTGTTGAAATAAATTCTATGCAATCTGATGTAGCTCATGGAATGGATGTTTCTTTTGTATTATATGTTTTGTTGAGTTGATGTTTAAATGGCTGCCGGTCCACAGTTATGGAGCTTTGACTTGAAGGGTTATGGCTGTTCTAGTAAATGTCATTCAATCTCAAACTTACAATAagaaagttctctctctctctatggttgTGACAGACCACTTGTAGCCCCTCTGCTGGCCAGACCTGGTATCTGATACGTGAGTTCAGATCCAGGAAGTGAAATGTTATATGGGTTAGTGGGAGCCACTCCTAAGCCTACTCCTCAGCACAATTGGAAACGAAACTCATCTCTTCAGCTCAGTCTGCTTGCGTTTCAAAATGGCAGAAGCCATGGACTCAATCAGTTGTTCAATCTGTTTGGAGATACTGAAGTATCCAGTGACTATTCCCTGTGGACACAGCTACTGTATGGACTGTATTAAATGCTGTTGGGATCAGAAGCTTGTCTGCAGCTGCCCCCAGTGCAGACAGATCTTCCCTACAAGGCCTGTTCTGAACAAAAACACTGTCATTGCAGAATTGGTGGAAACACTGACAGAAATAAATATGAAGAATATACAGGAGGTGAGACTTAAGGCAGCAGTGGAGGACAGTGAGGGGCTGTCAAAGATGAAGGTTGTTTCACCTCCTGAACCCAATACCAGAGAGGAGTTCTTGAAATATTCCTGCCAGCTCACATTGGACCCCAACACAGCTAATAGATATCTGCGTCTGTCTGAGGGGAACAGGAAGGTGACCAGGAGTGAAAACGCTGAGTCCTATcttcaccatccagacagatttaACTTCTACTGCCAGCTGTTGTGTAAAGAAGCTTTGTCTGGAACCTGCTACTGGGAGGTAGAAAGGAGTGGAAGCAAGTGTAAAGTTGCCGTGTCTTATAAAGGGATCtgcaggagaggagatggagtggATGTTAGCTTTGGACGAAATTATCAGTCCTGGACTTTGGTCTGTGATCCGTCTATCTGCTATTTCAGGCACAATAATATCAATACTGATATCCCTACCCCCTGCTCCTCCAGAGTAGGAGTCTACCTGGACCACAAGGCAGGaactctgtccttctacagtgtctctgacaagatgaccctcctccacagagtccagaccacattcactcagcccCTCTACCCTGGATTCTGGGTTGGTCCTGGTTATGGATCATCTGTGAAGATACTGACACCAATATAGTAAATTAACAAAGTTTTATCTACACTCATTGACTTTCAGTGTGTTCATAAGCATCGTAAAATCTTTTTCAGCCTGACACAATAACATAATACCTTTATGAAAACAGTAATACAATCTACAAGTGAGTGCATCTGTGCACTATTCAGAGGATGCAGTCCATTTCAATGAAAGGGATTTAATCTGTTAGACATCAGCTTTGCACAAGCTCCATTGACAATGAGCTGTTTGCATTGTTTGTTGAAATAAATTCTATGCAATCTGATGTAGCTCATGGAATGGATGTTTCTTTTGTATTATATGTTTTGTTGATGTTTAAATGTCTTCCGGTCCACAGTTATGGAGCTTTGACTTGAAGGGTTATGGCTGTTCTAGTAAATGTCATTCAATCTCAAACTTACAATAagaaagttctctctctctctatggttgTGACAGACCACTTGTAGCCCCTCTGCTGGCCAGACCTGGTATCTGATACGTGAGTTCAGATCCAGGAAGTGAAATGTTATATGGGTTAGTGGGAGCCACTCCTAAGCCTACTCCTCAGCACAATTGGAAACGAAACTCATCTCTTCAGCTCAGTCTGCTTGCGTTTCAAAATGGCAGAAGCCATGGACTCAATCAGTTGTTCAATCTGTTTGGAGATACTGAAGGATCCAGTGACTATTCCCTGTGGACACAGCTACTGTATGGACTGTATTAAATGCTGTTGGGATCAGAAGCTTGTCTGCAGCTGCCCCCAGTGCAGACAGATCTTCCCTACAAGGCCTGTTCTGAAAAAAAACACTGTCATTGCAGAATTGGTGGAAACACTGACAGAAATAGATACGAAGAAGATTCAGGTGAAACTTAAGGCAGCAGTGGAGGACAGTGAGGGGCTGTCAAAGATGAAGGTTGTTTCACCTCCTGAACCCAATACCAGAGAGGAGTTCTTGAAATATTCCTGCCAGCTCACATTGGACCCCAACACAGCTAATAGATATCTGCGTCTGTCTGAGGGGAACAGGAAGGTGACCAGGAGTGAAAACGCTGAGTCCTATcttcaccatccagacagatttaACTTCTACTGCCAGCTGTTGTGTAAAGAAGCTTTGTCTGGAACCTGCTACTGGGAGGTAGAAAGGAGTGGAAGCAAGTGTAAAGTTGCCGTGTCTTATAAAGGGATCtgcaggagaggagatggagtggATGTTAGCTTTGGACGAAATTATCAGTCCTGGACTTTGGTCTGTGATCCGTCTATCTGCTATTTCAGGCACAATAATATCAATACTGATATCCCTACCCCCTGCTCCTCCAGAGTAGGAGTCTACCTGGACCACAAGGCAGGaactctgtccttctacagtgtctctgacaagatgaccctcctccacagagtccagaccacattcactcagcccCTCTACCCTGGATACTGGGTTGGTCCTGGTTATGGATCATCTGTGAAGATACTGACACCAATATAGTAAATTAACAAAGTTTTATCTACACTCATTGACTTTCAGTGTGTTCATAAGCATCGTAAAATCTTTTTCAGCCTGACACAGTAACATAATACCTTTATGAAAACAGTAATACAATCTACAAGTGAGTGCATCTGTGCACTATTCAGAGGATGCAGTCCATTTCAATGAAAGGGATTTAATCTGTTAGACATCAGCTTTGCACAAGCTCCATTGACAATGAGCTGTTTGCATTGTTTGTTGAAATAAATTCTATGCAATCTGATGTA
>XM_036955479.1
TTTGCATTGTTTGTTGAAATAAATTCTATGCAATCTGATGTAGCTCATGGAATGGATGTTTCTTTTGTATTATATGTTTTGTTGAGTTGATGTTTAAATGGCTGCCGGTCCACAGTTATGGAGCTTTGACTTGAAGGGTTATGGCTGTTCTAGTAAATGTCATTCAATCTCAAACTTACAATAagaaagttctctctctctctatggttgTGACAGACCACTTGTAGCCCCTCTGCTGGCCAGACCTGGTATCTGATACGTGAGTTCAGATCCAGGAAGTGAAATGTTATATGGGTTAGTGGGAGCCACTCCTAAGCCTACTCCTCAGCACAATTGGAAACGAAACTCATCTCTTCAGCTCAGTCTGCTTGCGTTTCAAAATGGCAGAAGCCATGGACTCAATCAGTTGTTCAATCTGTTTGGAGATACTGAAGTATCCAGTGACTATTCCCTGTGGACACAGCTACTGTATGGACTGTATTAAATGCTGTTGGGATCAGAAGCTTGTCTGCAGCTGCCCCCAGTGCAGACAGATCTTCCCTACAAGGCCTGTTCTGAACAAAAACACTGTCATTGCAGAATTGGTGGAAACACTGACAGAAATAAATATGAAGAATATACAGGAGGTGAGACTTAAGGCAGCAGTGGAGGACAGTGAGGGGCTGTCAAAGATGAAGGTTGTTTCACCTCCTGAACCCAATACCAGAGAGGAGTTCTTGAAATATTCCTGCCAGCTCACATTGGACCCCAACACAGCTAATAGATATCTGCGTCTGTCTGAGGGGAACAGGAAGGTGACCAGGAGTGAAAACGCTGAGTCCTATcttcaccatccagacagatttaACTTCTACTGCCAGCTGTTGTGTAAAGAAGCTTTGTCTGGAACCTGCTACTGGGAGGTAGAAAGGAGTGGAAGCAAGTGTAAAGTTGCCGTGTCTTATAAAGGGATCtgcaggagaggagatggagtggATGTTAGCTTTGGACGAAATTATCAGTCCTGGACTTTGGTCTGTGATCCGTCTATCTGCTATTTCAGGCACAATAATATCAATACTGATATCCCTACCCCCTGCTCCTCCAGAGTAGGAGTCTACCTGGACCACAAGGCAGGaactctgtccttctacagtgtctctgacaagatgaccctcctccacagagtccagaccacattcactcagcccCTCTACCCTGGATTCTGGGTTGGTCCTGGTTATGGATCATCTGTGAAGATACTGACACCAATATAGTAAATTAACAAAGTTTTATCTACACTCATTGACTTTCAGTGTGTTCATAAGCATCGTAAAATCTTTTTCAGCCTGACACAATAACATAATACCTTTATGAAAACAGTAATACAATCTACAAGTGAGTGCATCTGTGCACTATTCAGAGGATGCAGTCCATTTCAATGAAAGGGATTTAATCTGTTAGACATCAGCTTTGCACAAGCTCCATTGACAATGAGCTGTTTGCATTGTTTGTTGAAATAAATTCTATGCAATCTGATGTA

Function

NR:

description
E3 ubiquitin/ISG15 ligase TRIM25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955486.1 False 2436 mRNA 0.42 3 74157073 74167350
XM_036955490.1 False 3003 mRNA 0.43 5 74161055 74167349
XM_036955479.1 True 1522 mRNA 0.43 3 74164132 74167340

Neighbor

gene id symbol gene type direction distance location
LOC118941541 NA coding downstream 16197 74119058 ~ 74140876 (-)
LOC110496007 LOC106561184 coding downstream 30864 74122283 ~ 74126209 (-)
LOC110501884 NA coding downstream 44226 74111978 ~ 74112847 (-)
LOC110495986 LOC106561179 coding downstream 89963 74018519 ~ 74067110 (-)
LOC110495977 NA coding downstream 142660 74010498 ~ 74014413 (-)
LOC110501892 LOC106561189 coding upstream 73887 74241237 ~ 74433222 (-)
LOC110496063 LOC106561200 coding upstream 285182 74452532 ~ 74473316 (-)
LOC118937295 NA coding upstream 334064 74501414 ~ 74508105 (-)
LOC110496093 LOC106561201 coding upstream 365935 74533285 ~ 74594426 (-)
LOC110496174 LOC106561210 coding upstream 1189221 75356571 ~ 75361242 (-)
G183631 NA non-coding downstream 12287 74144585 ~ 74144786 (-)
G183602 NA non-coding downstream 14020 74141037 ~ 74143053 (-)
G183544 NA non-coding downstream 136977 74019259 ~ 74020096 (-)
G183672 LOC106561185 non-coding upstream 29522 74196872 ~ 74198670 (-)
G183601 LOC106561188 non-coding upstream 47967 74215317 ~ 74221649 (-)
G183714 NA non-coding upstream 118259 74285609 ~ 74286314 (-)
G183656 NA non-coding upstream 165674 74333024 ~ 74334618 (-)
G183538 NA other downstream 46282 74106883 ~ 74110791 (-)
G183096 NA other downstream 163528 73993078 ~ 73993545 (-)
G182882 NA other downstream 480650 73676212 ~ 73676423 (-)
G182708 NA other downstream 811226 73344950 ~ 73345847 (-)
LOC110495704 nrg4 other downstream 1078694 73076020 ~ 73078379 (-)
G184006 LOC106561202 other upstream 563522 74730872 ~ 74732637 (-)
LOC110496186 LOC106561212 other upstream 1438877 75595366 ~ 75607735 (-)
G186002 NA other upstream 1710009 75877359 ~ 75878060 (-)
tnni1c LOC106561253 other upstream 1817809 75985156 ~ 75989573 (-)
adm2b adm2 other upstream 1925820 76093170 ~ 76099909 (-)

Expression


Co-expression Network