LOC110496053 (LOC106561188)


Basic Information

Item Value
gene id LOC110496053
gene name LOC106561188
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74210463 ~ 74221530 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571706.2
TGATGTTTAGCGTGATGACGAGCTTGTTAACGCGGCACTTTTCCAAACTGACGCCTGGGATGTATTCTTTATTTTAATCGATGAGATCCAGTTTCTTTTGAGTACCGCTGCCACCATGTTTCAATATGCTTTGTGTTGTAGTCGCGACagacatatatatatagttaAGCAAACTTTATTATGCATGTTGTCAACCAGCACATTCAGTACATTAATAAGTGACATCATGGACCCCACTCCTGAGCCCAAGACCAGAGCGGAGGTTTGAAAGTAACTCTGCTACTTGGTCAGTGTGTGTATCAACATGGCAGAGGCCACGGACCTGATCAATTGTTCGATCTGTCTGGATCTACTGAAGGATCCAGTAACTATTCCCTGTGGACACAACTACTGTATGGAATGTATTAAAGGCTGTTGGGATCAGGACGATCTAAAAGGTGTGTACAGCTGTCCCCAGTGCAGGCAGACCTTTACCCCAAGACCTGTTCTGAACAGAAACCCTCTACTAACTGAGTTTGTGGAGATTCTGAAGAAGACAGGAATCCAAGCTGCTCCTCCAGCTCTCTGTTTTGGTGGACCTGGAGATGTTGAGTGTGACGTCTGTACTCTGAAAAAATTAAAAGCCGTAAagtcctgtctggtgtgtttagcctcttactgtgagactcaTCTCCAGCATCACTATGAATCGCCTGCATTTAAAAAACACAAGCTGGTCAAAGCCTCCACACAACTACAGGAGAAGATCTGCTCTCATCATGACAAGCTGCTGGAGGTTTACTGCCGTACGGATCAGCAGTGTATCTGTTATCAGTGTGAGATCGAGAAACACAAAGGCCATGATACCGTTTCCCCAGCAGTAGAAAGGATTGAGAGGCTGAAACAGTTAAGTGAGAACCAGGCCAGGCAGAGAAttcaggagagagaggtgaagataCAGGAGGTGAGACAGGCTGTGAAGTCACTCAAGTGCTCTGCACAGACCGCAGTTGAGGAAAGTGAGAGGATCTTTACTGAGCTGGTCCACTCTATTGACAAAACGCGCTCTGAGATGAAGGAACTGATCAGAGCCCAGGAGAAGGCTGAAGTGAGTCGGGCTGAAGGACTCCTGAAGCAACTGGAGCAGGATGTAGCTgagctgaagaggagagaggctgaGTTGGAGcaactctcacacacagaggatcacatCCATTTCCTCCAGAGtttccagtctgtctgtgtccctcctGGATCTGAGGCCTTACCCAGCATCACTGTCAACCAAATCTCATTTGAGGATTTACAGAAATCAATATCTGCACTTAAACAGCGACTGGAGGTTATATTCAAGGAGGAAATGGCCAAGATACCTGGGAAAGTGCTGATGCCAGCGACCATAAGTACAGAGGAATATGGTGTCCAGTTTGTGGATGAGCAAAGGTCTGAGCTCATTCAGAGGGTAACCATGGTGATGCCTATAGCAGATGAACTTCTTCAGAGATGCATGCTTCATAAAGAAATGTATAATACTATCCGTGATGCCAGGCCCAGCCAGGAACAGATGAGACTGCTGTACGAGGCCCTACACTCAGGAGGCTCTAAGGTGAAAGCAGCCTTTTATGAGATTCTACGGGAAAAACAACACTATCTAGTCAATCTAGCAACAAATCTTCATGATGTTCCACTCCCCGAACCCAGGATCAGAGAAGAGTTCTTGAAATATTCCTTACCGCTCACATTGGATCCTAACTCAGCTCAAGAGtgcctgtgtctgtctgaggGAAACAGGAAGGTGACAAATATTGGAAAGGCCCAGCCCTACCTTCACCATTCAGACAGATTTACCTACTTCGTccaggtgctgtgtagagagggtctgtctAGAGCCAGCtactgggaggtagagtggagtgggGATTCTGTTAATGTAGCCGTCTCATATAAAGGAATCATCAGGAAAGGAGACCAATGGAATGGCGTCGCTGCATTTGGACGGAATGATCAGTCGTTGAGTTTATACTGCTCAACCTCTAGCTGTAATTTCATGCACAATTGCTCTACAACTGTTATCACTGTCCCCTGCTCCTCCAGAGTTGGCGTGTACCTGGACCACACGGCAGGAACTCTGTCCTTCTACAACGTTTCTGACACAATGACTCTCCTCCACAGagtccagaccacattcactGAACCTCTTTATCCTGGGTTTACAGTTGGTCATGGATCATCTGTGAAGATACTGACACAGTGATAGAAGTAATGGAGCTTTCATATTAAACTCGGTATGGATTTAATCCATAACATTGTTATTTCTCTTTTTTTATAATCTTGAGAAGTTCTGAAAAATATGCTTAATGTCTCTGCTGATGGAGTGCTGCTGTTTTCCCCAGCTCTGACATAAACAATCTGTTATGTCCTGACTGCAAATCTGATGAACCAGGGTTTGTTGTATAAACACATGCATGCTGGCCTCTGTGGGCTGAGGAAAATAGTAAGCcatgagaaactcaaacaagGCCTAGTTCCAGTTTGGCAGTTAGCTCCTACCCCTTCAGTGTGCACAAGtttgacaggactggaaggatgTAAGCAATATGGAGGATGCTTCACTTGGCCTATTAGAAAAGCACATGGAGTCATCACCTATCCCATTCTTTTAGATCTGCAACACCAAAATGTTAGGGAAAGGGGAACACAATGGAATCAGGCTTATACATACAGTAGGTTACAGGATTCTGTCAacacaaaatcaaataaaatgttgtcACATCTGCCGAATACAATGTGtagccattcttgtgattgtgattttgccattgtaattgtttgtaaacttgtgtagttaaattaatctatgatcgtatgctatccatttgtttgtatgctgttctttgtttgacattttaatatttgattattaaccaatggTATTaagccactcttggccatgattacagacacctgtgtcttttgacactatataaacgagtcatcccgca
>XM_021571714.2
TGGGTCATCATGCCTTCTAAGATTATGTTTTGATCCTCCACCCTGTGAAGTTGCACACTCCGCTCATGGATTTAACAATGGTGGAAACTCTCCAGCCAATGTTTACAATCCAATGCTTTCAAATACATGTTGAGAAGTGTGCAAGTGCACATTTTGCGAGAATTATGTAAAATTTGGCTGGATGGAATTTTCACCATATGTCTTCCACCTTTCCAATTGTTTCAGATGTATAGAAGTGCCTAAAGTGTAGGGGCTAGGTGTTGATTATAAATTCTGATTTCCTTTCTTGCCTGTTGATTGCTGTGGGTTTTTATAATGTCCAGTTGGTGGCAGTAATGCACATTTTATGGGCTTGCTATCTTTCATGAGTCACTTACTAAGTAAGTAGTAGCAGAGACTGAAGAGGAAGTGAGATGTTGGTGCCTATGGGAGTGTAAACCAATAGGCCTAGAACTGCTCTGGGGTAAATGAAGAAGACAACTCCAAGCTGCCTTACCTCATGACTTTGTGACATCATGGACCCCACTCCTGAGCCCAAGACCAGAGCGGAGGTTTGAAAGTAACTCTGCTACTTGGTCAGTGTGTGTATCAACATGGCAGAGGCCACGGACCTGATCAATTGTTCGATCTGTCTGGATCTACTGAAGGATCCAGTAACTATTCCCTGTGGACACAACTACTGTATGGAATGTATTAAAGGCTGTTGGGATCAGGACGATCTAAAAGGTGTGTACAGCTGTCCCCAGTGCAGGCAGACCTTTACCCCAAGACCTGTTCTGAACAGAAACCCTCTACTAACTGAGTTTGTGGAGATTCTGAAGAAGACAGGAATCCAAGCTGCTCCTCCAGCTCTCTGTTTTGGTGGACCTGGAGATGTTGAGTGTGACGTCTGTACTCTGAAAAAATTAAAAGCCGTAAagtcctgtctggtgtgtttagcctcttactgtgagactcaTCTCCAGCATCACTATGAATCGCCTGCATTTAAAAAACACAAGCTGGTCAAAGCCTCCACACAACTACAGGAGAAGATCTGCTCTCATCATGACAAGCTGCTGGAGGTTTACTGCCGTACGGATCAGCAGTGTATCTGTTATCAGTGTGAGATCGAGAAACACAAAGGCCATGATACCGTTTCCCCAGCAGTAGAAAGGATTGAGAGGCTGAAACAGTTAAGTGAGAACCAGGCCAGGCAGAGAAttcaggagagagaggtgaagataCAGGAGGTGAGACAGGCTGTGAAGTCACTCAAGTGCTCTGCACAGACCGCAGTTGAGGAAAGTGAGAGGATCTTTACTGAGCTGGTCCACTCTATTGACAAAACGCGCTCTGAGATGAAGGAACTGATCAGAGCCCAGGAGAAGGCTGAAGTGAGTCGGGCTGAAGGACTCCTGAAGCAACTGGAGCAGGATGTAGCTgagctgaagaggagagaggctgaGTTGGAGcaactctcacacacagaggatcacatCCATTTCCTCCAGAGtttccagtctgtctgtgtccctcctGGATCTGAGGCCTTACCCAGCATCACTGTCAACCAAATCTCATTTGAGGATTTACAGAAATCAATATCTGCACTTAAACAGCGACTGGAGGTTATATTCAAGGAGGAAATGGCCAAGATACCTGGGAAAGTGCTGATGCCAGCGACCATAAGTACAGAGGAATATGGTGTCCAGTTTGTGGATGAGCAAAGGTCTGAGCTCATTCAGAGGGTAACCATGGTGATGCCTATAGCAGATGAACTTCTTCAGAGATGCATGCTTCATAAAGAAATGTATAATACTATCCGTGATGCCAGGCCCAGCCAGGAACAGATGAGACTGCTGTACGAGGCCCTACACTCAGGAGGCTCTAAGGTGAAAGCAGCCTTTTATGAGATTCTACGGGAAAAACAACACTATCTAGTCAATCTAGCAACAAATCTTCATGATGTTCCACTCCCCGAACCCAGGATCAGAGAAGAGTTCTTGAAATATTCCTTACCGCTCACATTGGATCCTAACTCAGCTCAAGAGtgcctgtgtctgtctgaggGAAACAGGAAGGTGACAAATATTGGAAAGGCCCAGCCCTACCTTCACCATTCAGACAGATTTACCTACTTCGTccaggtgctgtgtagagagggtctgtctAGAGCCAGCtactgggaggtagagtggagtgggGATTCTGTTAATGTAGCCGTCTCATATAAAGGAATCATCAGGAAAGGAGACCAATGGAATGGCGTCGCTGCATTTGGACGGAATGATCAGTCGTTGAGTTTATACTGCTCAACCTCTAGCTGTAATTTCATGCACAATTGCTCTACAACTGTTATCACTGTCCCCTGCTCCTCCAGAGTTGGCGTGTACCTGGACCACACGGCAGGAACTCTGTCCTTCTACAACGTTTCTGACACAATGACTCTCCTCCACAGagtccagaccacattcactGAACCTCTTTATCCTGGGTTTACAGTTGGTCATGGATCATCTGTGAAGATACTGACACAGTGATAGAAGTAATGGAGCTTTCATATTAAACTCGGTATGGATTTAATCCATAACATTGTTATTTCTCTTTTTTTATAATCTTGAGAAGTTCTGAAAAATATGCTTAATGTCTCTGCTGATGGAGTGCTGCTGTTTTCCCCAGCTCTGACATAAACAATCTGTTATGTCCTGACTGCAAATCTGATGAACCAGGGTTTGTTGTATAAACACATGCATGCTGGCCTCTGTGGGCTGAGGAAAATAGTAAGCcatgagaaactcaaacaagGCCTAGTTCCAGTTTGGCAGTTAGCTCCTACCCCTTCAGTGTGCACAAGtttgacaggactggaaggatgTAAGCAATATGGAGGATGCTTCACTTGGCCTATTAGAAAAGCACATGGAGTCATCACCTATCCCATTCTTTTAGATCTGCAACACCAAAATGTTAGGGAAAGGGGAACACAATGGAATCAGGCTTATACATACAGTAGGTTACAGGATTCTGTCAacacaaaatcaaataaaatgttgtcACATCTGCCGAATACAATGTGtagccattcttgtgattgtgattttgccattgtaattgtttgtaaacttgtgtagttaaattaatctatgatcgtatgctatccatttgtttgtatgctgttctttgtttgacattttaatatttgattattaaccaatggTATTaagccactcttggccatgattacagacacctgtgtcttttgacactatataaacgagtcatcccgca

Function

NR:

description
E3 ubiquitin/ISG15 ligase TRIM25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571706.2 False 2981 mRNA 0.44 10 74210463 74221530
XM_021571714.2 True 3270 mRNA 0.44 10 74211135 74221530

Neighbor

gene id symbol gene type direction distance location
LOC110496029 LOC106561185 coding upstream 11777 74178483 ~ 74198686 (+)
LOC110495996 LOC106561183 coding upstream 70961 74126223 ~ 74139502 (+)
LOC110495989 LOC106573469 coding upstream 99639 74069964 ~ 74110824 (+)
LOC110495967 LOC106573468 coding upstream 199904 73999269 ~ 74010559 (+)
LOC110495946 LOC106561177 coding upstream 225726 73883551 ~ 73984737 (+)
LOC110496089 LOC105018423 coding downstream 298246 74519776 ~ 74529599 (+)
LOC110496107 LOC106561202 coding downstream 438829 74660359 ~ 74732682 (+)
LOC110496116 LOC106561204 coding downstream 606737 74828267 ~ 74890826 (+)
LOC110496126 LOC106561207 coding downstream 688937 74910467 ~ 74962990 (+)
LOC118936821 LOC106561223 coding downstream 749708 74971238 ~ 74988691 (+)
G183182 NA non-coding upstream 32781 74173635 ~ 74177682 (+)
G183176 NA non-coding upstream 54118 74155844 ~ 74156345 (+)
G183175 NA non-coding upstream 54905 74155246 ~ 74155558 (+)
G183168 NA non-coding upstream 68818 74141347 ~ 74141645 (+)
G183152 NA non-coding upstream 80592 74060896 ~ 74129871 (+)
G183226 frmd4a non-coding downstream 38843 74260373 ~ 74261170 (+)
G183346 NA non-coding downstream 216883 74438413 ~ 74438688 (+)
G183354 NA non-coding downstream 231008 74452538 ~ 74457151 (+)
G184023 NA non-coding downstream 531836 74753366 ~ 74753628 (+)
G182144 NA other upstream 585945 73622536 ~ 73624518 (+)
G182139 LOC106561173 other upstream 600226 73606892 ~ 73610237 (+)
LOC110501876 LOC106561170 other upstream 630388 73456669 ~ 73580075 (+)
G181995 NA other upstream 868186 73341380 ~ 73342277 (+)
LOC110533853 LOC106561194 other upstream 1956736 72250884 ~ 72253809 (+)
G183361 NA other downstream 308119 74529649 ~ 74535026 (+)
LOC110496136 LOC106561223 other downstream 815722 74991655 ~ 75145608 (+)
LOC110496459 LOC106561246 other downstream 1946127 76167573 ~ 76181555 (+)

Expression


Co-expression Network