LOC110496107 (LOC106561202)


Basic Information

Item Value
gene id LOC110496107
gene name LOC106561202
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74660359 ~ 74732682 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955511.1
CATCCCTCTCCATTCATTTAACACGTGCAAGTGGAGTGCATAGTTAGTTATTCGCGGACGCCGGGGACTCAAACTGCTCAGAAGTGAATAAAGGAAGCACAGGGAAATATTGGGGCGATTTCGTTTGAGCAACTTATATCGCTGCTGTAATAAATGACAGCTAGCTAGCCCTTGCCAGGTGTAATGTAAGGTTTCGGGAATGTGTTGTTTAAGGTATGTGTGTGAGTTCAGCTCTCATTACGCAGCGGAGGAATCCCGCTCCAGCAGCGACAAGACAACGTTGAGAACAGGTACTTTGCGAAGACGGTTGAGGAACAGTAGCAGAAGAGAGAAGAAAACCTCCACTCTCTCATCATGAAGACTGGAGGAGCAAATCCTGATCCTTGGGAGAGGAGCCAGGGTGAGAGGCTGTCCGGGAGCTCTGCTGGAAGTCAGGGGAGGATTAGGCTGTCTCTAGCCCACCCAGGGCTGCTGCTTCTGGGGATAGTACTGCTGGTCGTCCTGCCCTCTGGAGAAAGTGTCAAACAGAATGTACCCAGAGTCAAACTCAGCTACAAAGtgctgATCCAGGGTGGCAGTGTATCAGTGTTCCTGAGTCCTACTGACGGTCTCCATTCCCACTCTGTGTTGTTggatgaggagagaggcaggctgctGCTGGGAGCCAAAGACTCAGTCTACCTACTGGACCCGGACAACCTCAGCAGAGCCCCCAGGAAGatcagctGGCCATCCTCCAGagacacagtggagatgtgtaaACTGGCAGGCAAGAACGCTCAAttGGAGTGTGCCAACTTTGTGCGTGTGCTCCATAACTTTAACCATACCCATGTGTATGCCTGTGGGACAGGAGCCTTCCACCCAATATGTGCCTTCATTGAGATCTCAGGACGCAGAGTGGAGGGTGTGTTCAAGTTGTTGTCTGGTACAGTGGAGTCCGGGAGGTTGAAATGCCCTTACGACCCCTGGCAACCTTTCACGTCTGTCCTCACAGACCAGTTCATGTATGCTGGCACGGCATCAGACTTCCTTGGTAAAGACACAACGTTCACCCGCTCCTTGGGCCCACCCCCCGACCAGCACTACATACGTACTGACATCTCAGAGGACTACTGGAtcaacgaggccAGGTTTGTATCAGCCCATCCTGTGTCAGACACCTACAACCCAGACGATGACAAGATCTACTTCTTCTTCCGCGAGTCATCACGTGACGGCAACGATAAGAGTGTCCTGTCCCGCGTGGCACGCGTCTGCAAGaATGACGTGGGAGGGTTGAGGAGTCTGACCAATAAGTGGACAACGTTCCTCAAAGCCAGACTGGTGTGTTCCATCCCTGGACCTGACGGAGTGGACACGCACTTTGATGAGCTCcaggaCATATTCCTGCTCCCCACCAGAGATGAGAAGAACCCTGTTGTGTATGGAGTCTTCACCACCTCCAGCTCTGTGTTCCGTGGCTCGgcggtgtgtgtgtacagcatggCTGACATACGAGCTGTGTTCAACGGACCCTACGCTCACAAGGAAGGACCTGACCATCGCTGGGTAGAATACGAGGGGAGAATACCTTACCCTCGCCCTGGAACGTGTCCCAGTAAGACGTATGATCCCAGGATAAGGACCACTAAAGACTTCTCAGATGAGGTGGTCAGTTTCATCCGCTTCCACCCCCTCATGTTCCGCTCCGTCTACCCCCTGACCAGCCGACCCGTGTTCACGCGTGTACGTGTCgactacacactgacacagataGTGGTGGACCGCGTCATGGCTGAGGACGGACAGTATGAAGTCATGTTTCTGGGGACAGATGCTGGGTCAGTTCTAAAGGTGGTGAGCATTACTCAGGAGAACTGGTCTACTGAGGAGGTGATTCTGGAGGAGCTCTCGGTGTTCcagGCTCCCACTCCCATCCTGAGTATGGAGATCTCTTCTAAACAGCAACAGCTGTATGTGGGTTCGGGGGCTGGGCTAGCCCAGGTGTCCCTGAGCAGGTGTCACCTGTATGGTCAGGTGTGTGCAGAGTGTTGCCTTGCCAGAGATCCTTACTGCGCCTGGGACGGACACACCTGCTCACAATACGTCCCAGCATCCAAgagGAGAGCCAGAAGACAAGACATCAAACATGGAGACCCATCCAGCCAATGTTGGGACACAGAGGACACTCTGCGTGGaggcagggtggaggagaggacaaTGTTTGGGGTGGAAAATAACTCGACCTTCCTGGAGTGTCTCCCCAAATCACAACAGACCACCACACGCTGGTTCATACATAGACCTGGAGCTGaacacagagaggagGTGAGGCCAGATGACAGAGTGGTCCATACAGGCCAAGGTCTCCTCATTCGCTCTCTCCATCCTGCCGATGCCGGCATGTACGTGTGTATGGCACAGgagcacacacacttcacacacactctGCTCCGCCTCACGCTGCGCCTCATTTCGTACGGGCATCTTGACGGGCGGCCAAAGCCCAGCAAGGTCCCCAGTGTTGAGGTTCGCCCTGGAGCAGAGTCTCGTCAGCGCTATAAGGACTACCTGCGTGTGATGAGTTCTCCCATTGGCTCGCTGGAGGAGTACTGTGATTCGCTTTGGCTGGAGAAGAGGCCGGCCAataggagaggtggaagagggcaGGGGGTGGGGAAATGGAAACACATCCAGgagctgaagaaaagcaggaacAGGCGACACcatggagagaggaatggagagagggataaagagatggatggagagagggtagtgagacagaggagaggatgagcTGGTGAGGATACCAAAAAGGAGGAGTGAGAACAGCAGTCACAAAAAGTGTCATTAGGGGAACCCATCAATGTTTATAGTGGTAAAGGGGGGCCATGGGTAAGATGATCAAACAAGTAGTTAGACTTGAGGGAAAGTTATAGGGACTACAATACAATCTTAGAAAAAAATGATTCCAatagggttctttggctgtccacataggagagccctttctggttccagctagaacctttttgggttccatgtaggagCCTCTGTAGAAAAAGTTGTACCTtgaaccaaaatggttctacttGCAACCAAAAAGTGTTCAATGAGGGTGTAGACTGCTAAGAGTAGACTGCTGTCACCGGTATGATCGTATTTTATACCAGTCAAACACTCATAGGACTTACATAGGTCTGGCTTTTCAAACTACATACCCATGATCCCTCTGGCTGTGCCCAGGTTTGTATCTCAATATTGTCTCAGTGCTTTTACTGTTTTATGGTTGTGGCTAGAAGGGGTGCAGCTAATGTCAAATGTGATTTCAAACTCCCGTGAGAGTTTGGAATTTGTCAATTTTTCACAAACACAACATTTTTTTAATTGTTCCAAACGTCAGATTTCGAAGTGTTTAacgttaagttcaggcattaactccaaattctcaaggttagtcattaactccgaatggttaaggttagggtaaggttaaggtaACGGTTAAGTTTTttggataggcttaaaacaaaaattaCTTTCTATTGCTAGATTTGAACTTTCAATCTGAGGCAGATGCTTATCCACCATTCCCGTCCACAGCACCCTAGCAAAACCAGTGTTCCCTGTTGTCCCTAGCGGccagtttccacgtcatctcgCGTCGTCCTCAGACTTGGATGgatgttgaatactgacttgtatcatgggtgacaTGGCTATGCCAGTATGGTCTGAGTTCACAACAAGTGTGTGATGTCACTGAACTTCGCTgcatcccttctagccatgaccctATTTGATCCTATTGAGATGTGGCCCATaggtcagtagtgtgtgtgttaatCAGATGCATTCATGTTGAATGACTGTAAATACTTCTATAACATGTACAGGAGAAACTGCATGCTCTAGATAAGCTTAGCTATGACCTATTCTACTGCTACTATAATAATCAGGTATTATGTCTGGAATGAACAAAGAATCATATTTTTGTACAAAGTGAATGTTTCTGTTTTTGTAGGTGTATTTTGGTATTGTCTAAAAGTTATTTAAATAAACTCTTGCCTTATAATCCTGAATgagtatggagagggagagagaatgagacagagaaatAAAAAGTGCGTCATAAGTGTA
>XM_036955512.1
CCTCTCCATTCATTTAACACGTGCAAGTGGAGTGCATAGTTAGTTATTCGCGGACGCCGGGGACTCAAACTGCTCAGAAGTGAATAAAGGAAGCACAGGGAAATATTGGGGCGATTTCGTTTGAGCAACTTATATCGCTGCTGTAATAAATGACAGCTAGCTAGCCCTTGCCAGGTGTAATGTAAGGTTTCGGGAATGTGTTGTTTAAGGTATGTGTGTGAGTTCAGCTCTCATTACGCAGCGGAGGAATCCCGCTCCAGCAGCGACAAGACAACGTTGAGAACAGGACGGTTGAGGAACAGTAGCAGAAGAGAGAAGAAAACCTCCACTCTCTCATCATGAAGACTGGAGGAGCAAATCCTGATCCTTGGGAGAGGAGCCAGGGTGAGAGGCTGTCCGGGAGCTCTGCTGGAAGTCAGGGGAGGATTAGGCTGTCTCTAGCCCACCCAGGGCTGCTGCTTCTGGGGATAGTACTGCTGGTCGTCCTGCCCTCTGGAGAAAGTGTCAAACAGAATGTACCCAGAGTCAAACTCAGCTACAAAGtgctgATCCAGGGTGGCAGTGTATCAGTGTTCCTGAGTCCTACTGACGGTCTCCATTCCCACTCTGTGTTGTTggatgaggagagaggcaggctgctGCTGGGAGCCAAAGACTCAGTCTACCTACTGGACCCGGACAACCTCAGCAGAGCCCCCAGGAAGatcagctGGCCATCCTCCAGagacacagtggagatgtgtaaACTGGCAGGCAAGAACGCTCAAttGGAGTGTGCCAACTTTGTGCGTGTGCTCCATAACTTTAACCATACCCATGTGTATGCCTGTGGGACAGGAGCCTTCCACCCAATATGTGCCTTCATTGAGATCTCAGGACGCAGAGTGGAGGGTGTGTTCAAGTTGTTGTCTGGTACAGTGGAGTCCGGGAGGTTGAAATGCCCTTACGACCCCTGGCAACCTTTCACGTCTGTCCTCACAGACCAGTTCATGTATGCTGGCACGGCATCAGACTTCCTTGGTAAAGACACAACGTTCACCCGCTCCTTGGGCCCACCCCCCGACCAGCACTACATACGTACTGACATCTCAGAGGACTACTGGAtcaacgaggccAGGTTTGTATCAGCCCATCCTGTGTCAGACACCTACAACCCAGACGATGACAAGATCTACTTCTTCTTCCGCGAGTCATCACGTGACGGCAACGATAAGAGTGTCCTGTCCCGCGTGGCACGCGTCTGCAAGaATGACGTGGGAGGGTTGAGGAGTCTGACCAATAAGTGGACAACGTTCCTCAAAGCCAGACTGGTGTGTTCCATCCCTGGACCTGACGGAGTGGACACGCACTTTGATGAGCTCcaggaCATATTCCTGCTCCCCACCAGAGATGAGAAGAACCCTGTTGTGTATGGAGTCTTCACCACCTCCAGCTCTGTGTTCCGTGGCTCGgcggtgtgtgtgtacagcatggCTGACATACGAGCTGTGTTCAACGGACCCTACGCTCACAAGGAAGGACCTGACCATCGCTGGGTAGAATACGAGGGGAGAATACCTTACCCTCGCCCTGGAACGTGTCCCAGTAAGACGTATGATCCCAGGATAAGGACCACTAAAGACTTCTCAGATGAGGTGGTCAGTTTCATCCGCTTCCACCCCCTCATGTTCCGCTCCGTCTACCCCCTGACCAGCCGACCCGTGTTCACGCGTGTACGTGTCgactacacactgacacagataGTGGTGGACCGCGTCATGGCTGAGGACGGACAGTATGAAGTCATGTTTCTGGGGACAGATGCTGGGTCAGTTCTAAAGGTGGTGAGCATTACTCAGGAGAACTGGTCTACTGAGGAGGTGATTCTGGAGGAGCTCTCGGTGTTCcagGCTCCCACTCCCATCCTGAGTATGGAGATCTCTTCTAAACAGCAACAGCTGTATGTGGGTTCGGGGGCTGGGCTAGCCCAGGTGTCCCTGAGCAGGTGTCACCTGTATGGTCAGGTGTGTGCAGAGTGTTGCCTTGCCAGAGATCCTTACTGCGCCTGGGACGGACACACCTGCTCACAATACGTCCCAGCATCCAAgagGAGAGCCAGAAGACAAGACATCAAACATGGAGACCCATCCAGCCAATGTTGGGACACAGAGGACACTCTGCGTGGaggcagggtggaggagaggacaaTGTTTGGGGTGGAAAATAACTCGACCTTCCTGGAGTGTCTCCCCAAATCACAACAGACCACCACACGCTGGTTCATACATAGACCTGGAGCTGaacacagagaggagGTGAGGCCAGATGACAGAGTGGTCCATACAGGCCAAGGTCTCCTCATTCGCTCTCTCCATCCTGCCGATGCCGGCATGTACGTGTGTATGGCACAGgagcacacacacttcacacacactctGCTCCGCCTCACGCTGCGCCTCATTTCGTACGGGCATCTTGACGGGCGGCCAAAGCCCAGCAAGGTCCCCAGTGTTGAGGTTCGCCCTGGAGCAGAGTCTCGTCAGCGCTATAAGGACTACCTGCGTGTGATGAGTTCTCCCATTGGCTCGCTGGAGGAGTACTGTGATTCGCTTTGGCTGGAGAAGAGGCCGGCCAataggagaggtggaagagggcaGGGGGTGGGGAAATGGAAACACATCCAGgagctgaagaaaagcaggaacAGGCGACACcatggagagaggaatggagagagggataaagagatggatggagagagggtagtgagacagaggagaggatgagcTGGTGAGGATACCAAAAAGGAGGAGTGAGAACAGCAGTCACAAAAAGTGTCATTAGGGGAACCCATCAATGTTTATAGTGGTAAAGGGGGGCCATGGGTAAGATGATCAAACAAGTAGTTAGACTTGAGGGAAAGTTATAGGGACTACAATACAATCTTAGAAAAAAATGATTCCAatagggttctttggctgtccacataggagagccctttctggttccagctagaacctttttgggttccatgtaggagCCTCTGTAGAAAAAGTTGTACCTtgaaccaaaatggttctacttGCAACCAAAAAGTGTTCAATGAGGGTGTAGACTGCTAAGAGTAGACTGCTGTCACCGGTATGATCGTATTTTATACCAGTCAAACACTCATAGGACTTACATAGGTCTGGCTTTTCAAACTACATACCCATGATCCCTCTGGCTGTGCCCAGGTTTGTATCTCAATATTGTCTCAGTGCTTTTACTGTTTTATGGTTGTGGCTAGAAGGGGTGCAGCTAATGTCAAATGTGATTTCAAACTCCCGTGAGAGTTTGGAATTTGTCAATTTTTCACAAACACAACATTTTTTTAATTGTTCCAAACGTCAGATTTCGAAGTGTTTAacgttaagttcaggcattaactccaaattctcaaggttagtcattaactccgaatggttaaggttagggtaaggttaaggtaACGGTTAAGTTTTttggataggcttaaaacaaaaattaCTTTCTATTGCTAGATTTGAACTTTCAATCTGAGGCAGATGCTTATCCACCATTCCCGTCCACAGCACCCTAGCAAAACCAGTGTTCCCTGTTGTCCCTAGCGGccagtttccacgtcatctcgCGTCGTCCTCAGACTTGGATGgatgttgaatactgacttgtatcatgggtgacaTGGCTATGCCAGTATGGTCTGAGTTCACAACAAGTGTGTGATGTCACTGAACTTCGCTgcatcccttctagccatgaccctATTTGATCCTATTGAGATGTGGCCCATaggtcagtagtgtgtgtgttaatCAGATGCATTCATGTTGAATGACTGTAAATACTTCTATAACATGTACAGGAGAAACTGCATGCTCTAGATAAGCTTAGCTATGACCTATTCTACTGCTACTATAATAATCAGGTATTATGTCTGGAATGAACAAAGAATCATATTTTTGTACAAAGTGAATGTTTCTGTTTTTGTAGGTGTATTTTGGTATTGTCTAAAAGTTATTTAAATAAACTCTTGCCTTATAATCCTGAATgagtatggagagggagagagaatgagacagagaaatAAAAAGTGCGTCATAAGTGTA
>TU208178
catttgctttgtcattttgtggtattgtgtgtagactgatgaggggggggaaactatttaatccattatagattaaggctgtaacgtaacaaaatgtggaaaacgtcaagaggtctgaatactttccgaatgcactttatgtgtcggtacatttgtgtatatgcgtgcatgtgtgtgtatatgtgtgtgagtggATATGCATTGCGCCATCGAGGGATGGTTTATAACTCTATAATAGGAGGAACAGACAGGTAGAAGGGTTGTGAACTCCAGAAGTAGCGGTATGTACCTGAATCTGTGGAGTACTTCAGTTCACCACCAGATGGAGACAAGTTCAAAAACAGCTGAATGTCCCAGTAAGACGTATGATCCCAGGATAAGGACCACTAAAGACTTCTCAGATGAGGTGGTCAGTTTCATCCGCTTCCACCCCCTCATGTTCCGCTCCGTCTACCCCCTGACCAGCCGACCCGTGTTCACGCGTGTACGTGTCgactacacactgacacagataGTGGTGGACCGCGTCATGGCTGAGGACGGACAGTATGAAGTCATGTTTCTGGGGACAGATGCTGGGTCAGTTCTAAAGGTGGTGAGCATTACTCAGGAGAACTGGTCTACTGAGGAGGTGATTCTGGAGGAGCTCTCGGTGTTCcagg
>TU208175
gctgaagaaaagcaggaacAGGCGACACcatggagagaggaatggagagagggataaagagatggatggagagagggtagtgagacagaggagaggatgagcTGGTGAGGATACCAAAAAGGAGGAGTGAGAACAGCAGTCACAAAAAGTGTCATTAGGGGAACCCATCAATGTTTATAGTGGTAAAGGGGGGCCATGGGTAAGATGATCAAACAAGTAGTTAGActtaaaacaaaaattaCTTTCTATTGCTAGATTTGAACTTTCAATCTGAGGCAGATGCTTATCCACCATTCCCGTCCACAGCACCCTAGCAAAACCAGTGTTCCCTGTTGTCCCTAGCGGccagtttccacgtcatctcgCGTCGTCCTCAGACTTGGATGgatgttgaatactgacttgtatcatgggtgacaTGGCTATGCCAGTATGGTCTGAGTTCACAACAAGTGTGTGATGTCACTGAACTTCGCTgcatcccttctagccatgaccctATTTGATCCTATTGAGATGTGGCCCATaggtcagtagtgtgtgtgttaatCAGATGCATTCATGTTGAATGACTGTAAATACTTCTATAACATGTACAGGAGAAACTGCATGCTCTAGATAAGCTTAGCTATGACCTATTCTACTGCTACTATAATAATCAGGTATTATGTCTGGAATGAACAAAGAATCATATTTTTGTACAAAGTGAATGTTTCTGTTTTTG

Function

NR:

description
semaphorin-3D-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955511.1 False 4125 mRNA 0.49 18 74660359 74732682
XM_036955512.1 False 4109 mRNA 0.49 18 74660363 74732682
TU208178 False 662 TUCP 0.49 3 74711581 74714114
TU208175 True 724 lncRNA 0.43 2 74731239 74732563

Neighbor

gene id symbol gene type direction distance location
LOC110496089 LOC105018423 coding upstream 130760 74519776 ~ 74529599 (+)
LOC110496053 LOC106561188 coding upstream 438829 74210463 ~ 74221530 (+)
LOC110496029 LOC106561185 coding upstream 461673 74178483 ~ 74198686 (+)
LOC110495996 LOC106561183 coding upstream 520857 74126223 ~ 74139502 (+)
LOC110495989 LOC106573469 coding upstream 549535 74069964 ~ 74110824 (+)
LOC110496116 LOC106561204 coding downstream 95585 74828267 ~ 74890826 (+)
LOC110496126 LOC106561207 coding downstream 177785 74910467 ~ 74962990 (+)
LOC118936821 LOC106561223 coding downstream 238556 74971238 ~ 74988691 (+)
LOC110496136 LOC106561223 coding downstream 258973 74991655 ~ 75145608 (+)
LOC110501950 LOC106561208 coding downstream 409320 75142002 ~ 75256839 (+)
G183354 NA non-coding upstream 203208 74452538 ~ 74457151 (+)
G183346 NA non-coding upstream 221671 74438413 ~ 74438688 (+)
G183226 frmd4a non-coding upstream 399189 74260373 ~ 74261170 (+)
G183177 LOC106561186 non-coding upstream 434102 74156622 ~ 74226257 (+)
G184023 NA non-coding downstream 20684 74753366 ~ 74753628 (+)
G184055 NA non-coding downstream 49277 74781959 ~ 74782190 (+)
G184060 NA non-coding downstream 52750 74785432 ~ 74785668 (+)
G184072 NA non-coding downstream 59724 74792406 ~ 74792739 (+)
G184075 NA non-coding downstream 70913 74803595 ~ 74803814 (+)
G183361 NA other upstream 125333 74529649 ~ 74535026 (+)
G182144 NA other upstream 1035841 73622536 ~ 73624518 (+)
G182139 LOC106561173 other upstream 1050122 73606892 ~ 73610237 (+)
LOC110501876 LOC106561170 other upstream 1080284 73456669 ~ 73580075 (+)
G181995 NA other upstream 1318082 73341380 ~ 73342277 (+)
LOC110496459 LOC106561246 other downstream 1434975 76167573 ~ 76181555 (+)
G185462 chkb other downstream 1701135 76433817 ~ 76434615 (+)
G185549 LOC106561235 other downstream 1801696 76534378 ~ 76606975 (+)
G183182 NA non-coding upstream 553557 74173635 ~ 74177682 (+)
LOC110496107 LOC106561202 other upstream 17125 74660359 ~ 74732682 (+)

Expression


Co-expression Network