LOC110496116 (LOC106561204)


Basic Information

Item Value
gene id LOC110496116
gene name LOC106561204
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74828267 ~ 74890826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571821.2
cctcctctctgtctaacaccctctcctcatctctgtctAACCCCCActcctcactctctatctctctccctctctctgtttcaagGACAGTGAAGTCCTTGGGCCTGTTTTGCGAGGCTGACCAGTAAATTGTGTGTCTGGCTGTACAGCCAGCCAGGCCTGTAGAGGCTGTATGGGAATATTATTATGGAGCATTTAGACTGTTGAGTGACTTGGATCGAACCTGTCTAATACCCATTAGACCAATTACTTAATGTCCTGGCAGTGGTACTGAAAGAGTCCTGCTGTCAAAGATACAGTATATCAGGATACGGTAAACTGGGAGAAGGACAATAGAGGAGGTCAAGGGTAGAGGAATAGGGAAATCTGAGGTAGAACAGTAGAGCTCAGTGTAGAAAAAAAACAGTCACAACCTCTCTGTTACAGGATTCACTTACAGTACAACATTCACTTACAGCACTTATCTATACTACTCTCTctgccttccttctctctctctctctctctctctctctctctctgtctctctctctctcctcctcacttttTCACTCTAGCAGCTCTCTCACACGTCCCTGTGCTCTTTCTCTTACTCGTCTCCactccctccacccccttctctctgGCTGTGCTGGCTCCCTCAGCTGTTCTCAGTTGCTCTGtgtgcagtgtgtagtgtggaCAGGGCTAGGCTGAGCTGGGCTATGTTGAGGACATAGAATGTCTCAGTGAAGACTATTTCCCAAGCTAACTGGATTAGGAGCTGGAACATACTGGACCTGTTTGTCTTTACTAACTAAAGACAGAGTTTTAATTGAGGGCATGctggaagagagaaaagagagaaacaaaTAGAGAGTCAACACTAGAGAATTGTTGGAGCAGAGACCCACGTAAAGACTGATCTCTAGCCCAGCTCCCCTCACTCTCCCCGGGATCGGTATTGTGGGACTCCCCTTGCCTCTGACCTCCAACATTGAGGTGGTATGAGTCTGCTGTGTGGGTCCGGTTCAGCTCGGTTCAGTTCCACTCAGTTCGGTTTGACTCGGTTCTGTTTGGCTTGCTTAGACTGGCTGTCTATAGCACTTACCCATACCCCTGCTCCATTTTCAGGTTCTGTGTCTCTGGAACACCTGACCCATAACCCCTGAACGTAGGACAGGTTCTGGTCCAGTTTTGCAAAATTACTGGACTGAACAGACTTCTGTTTGACAGTATttcaatacttttttattttctgGAAACTCTACCCCTGATCTGGGACTGATCCTGGTTCTGCTGACATCTATTCTGTGTTCCGGAGGACTGGTTCTTCAGGGACCTGTctggcctctctctccccaggatcATGGCCTCTTTCTGGGGCATGGTGGTGTTGCTGTATGGGATGGTGGTTATTTCTGGAGCACAGAAGACGAAGAGCAATATGCCCAGGCTAAAACTCTCTTATAAAGagatgttggaGTCCAATAACTTGGTGACATTTGAGGGCCTGGCCAATAGCTCAGCTTACCACACGTTCCTATTGGATGAGGAGAAGGGTCGTCTGGTGGTGGGAGCCAAGGACCACATATTCTCCTTCAACCTGCTCAACATCAGCAGAGACCTGGCACAGatCCCGTGGCCTGCATCCACCTCCAGAAGAGATGAGTGTAAATGGGCAGGGAAGGACCTCATGAGGGAATGCGCTAACTTCATCAAGGTGTTGCAGCCTTTTAACCAGACCCATCTGTATGTATGTGGAACTGGAGCCTTCCACCCTGTCTGCGCCTACTTGGAGGTGGGGAAGAAACTAGAGGACAGTGTGTTCAGGCTGGAGCCCCTGATAGAGAACGGTCGAGGGAAGAGCCCTTATGACCCCAAGCTGCTCACAGCGTCCATGCTCATCGaTGGCGAGCTGTATTCTGGGACGTCAGCGGACTTCATGGGGCGGGATTTTGCCATCTTCCGTACGTTGGGACAGCATCACCCCATTAGAACTGAGCAACACGACTCCCGCTGGCTGAATGATCCCAGGTTTGTGAGTGTCTATCTGATCCCAGAGAGTGACAACCCCGAGGACGACAAGATCTATCTGTTCTTCAGAGAGAACGCTATGGATGGGGAACACGCAGGGAAGGCTACACACGCACGCATCGGACAGCTCTGCAAGAATGACTTTGGAGGCCACAGGAGTTTGGTGAATAAGTGGACAACTTTCCTGAAGGCCAGACTGGTGTGTTCTGTACCTGGACTCAATGGCATAGACACACACTTTGACGAACTACAGGATGTGTTTCTGATGAGCGCTAAGGATCCCAAGAACCCCACCATATATGCAGTGTTCACTACATCCAGtaACATCTTCAAGGGCTCAGCAGTGTGTTTGTACAGCATGGCAGACATCAGAAGGGTGTTTCTAGGTCCCTATGCCCACAGGGACGGCCCTAACTATCAGTGGGTTCCCTTCCCCGGAAGGGTACCGTACCCACGACCTGGCACGTGCCCCAGCAAGACATTCGGAGGATTTGATTCAACAAAGGACTTGCCTGATGATGTCATAACATTTGCGAGAGGACACCCAGCGATGTTTAACCCCATCTATCCCATCAACAACCGACCAATCATAGTCAAGACGGACACGGACTACCAGTTCACACAGATAGTGGTGGACAAAGTGGAGGCTGAGGACGGACAGTATGACGTCATGTTCATaggcacagACATGGGTAAAGTGCTGAAGGTGGTGTCCATCCCCAGAGGGTCCTGGCATGACCTGGAAGAGGTTCTACTGGAGGAGATGACTGTGTTCAGGGAGCCAACTGCTATTACAGCGATGGAACTCTCCACGAAGCAGCAACAGTTGTACCTAGGCTCAGAGCTGGGCATATCCCAGATGCCTTTGCATCGCTGTGAGGTGTACGGGAAGGCGTGTGCTGAGTGCTGTCTAGCTAGAGACCCTTACTGTGCCTGGGATGGGACCGAGTGCTCACGATACTTTCCCATGGCCAAgagGAGGACAAGGAGACAGGACATCAGGAATGGAGACCCTTTAACCCAGTGTTCAGACCTGCAGCATCATGATAACCTGAATGTGCAGCCCACGGTGCTGGATAAGACAGTGTATGCAGTGGAGAACAGCAGTACGTTCCTGGAGTGTAGCCCCAAGTCCCAGAGAGCACTCACCTACTGGCAGTACCAACAAGTCAACGACGACAGGAGACAAGACATCAAAGCAGAGGATCGTTTTGTCCGTACGGAGCAGGGCCTGCTGATCCGCATATTGAACAAAAAGGATTCTGGGACTTATGTGTGCCAGGCTGTAGAACACGGCTTCATGCAGACGCTCCTAAGGGTCACCCTGGAAGTCATCGACACTGAACGCCTCGACGAGCTCATTCACCGTGATGACGAAACTGCCACACACACCACTgccacacacaccacctcctggGACACGCCCACAGCCCGGGAATCATCCAATCAGAAGCTATGGTACCGTGACTTCCTGTCATTAGTGAACCACCCGACCCTGAACAGCGTGGATGAGTTCTGTGAGCAGGTGTGGAAGAGGGAAAAGAAGCAGAGGAGGCAGAAAGCACACCTATCCCAACAGGTCCAGCTACACCAGCAGCAGCAGGGCCTCGTGCACGCTCACACCCACGTGAACGCCCATGGGCTTGCGGCCAAGTGGAAACACCTGCAGGAGAGGCAGAAGGGCCGCAACCGTCGGACCCATGAACTGGAGAGAGCCCCCCGCAGCGTCTGACCTCGCACCGACTAAATCCCATGACCCCGCCTGACCCCCAACCCCTAATCCATGTACACTGTCCTCATCCTCAGATCCCCCCTGAACCTCCTCCCCTGCCTCATCTCTCCTTACAGAGATAAAGACTCGTTCCACACTGACTTTGTACAGAGAATCTCAACTGGAAACAAAGGCAATATCCCGCCCTGGTCTGTGCGTGTAGGCTGCGTGGCCACCCATGTTTACAGTGACACGGCACAGAGACAAAGGATGTTACAGGACACCAGGTGATACAGTACTCTTCTATAATCTCAGCTGGCCTCTGTAGCCCCAGCACCATGGAGGGACAGTGTTAGCCTACATGTGGACTGGACTCCACGTACTGCAGAATAACTTATTGAAAACATGGCTCTGTCTCCGCTGTAGTGTAGCTTTGTTTGTTAGTCGTGTCTCGTCATTGTTGTCCACCCAGATATAGTAGTTAGCTTCTCCTAACAACCACTATCTTGGAACAAGGGATGATAGTGTTTGATGAAATGACGGAGCAGGGACGGACCTCGTGTGTATCACAAGGACATAACTACATACAGGTCATGTAAAGCACAACACTTTGATGTTGATTGGATTCTATGAGAAATGAAGAGTcctaaggagagaggaggatgactgAGCACTGCAAGATACTTCAGAGTAGCCATGGATTTACAACTAATTATGTTATTCTAACTTAAATCCAACATGTAAATGTGCTTTGACATCCTCATACTAAAGGGAATGGTTTGCGGTTATCTTGTTACATGATGTTGTTTCCCcataaacaaatgtatttaaCAGAAGGTGATTTGGTTTTTCCCGAAAGCAGTAGGTAGATAAAGTATCCAACATGATTCTGAAAGTCACTGTGTTAAGTGTATAGATAAGCTCTTCCAAGGCACAaatgttttcatgttttatttAAACGTGTATCTTTTTGATTTGCTCAGAGCCCTGTATAAGTATTTGTTACATAGTGGAAGTTGACTTTATTTTCTTTATGTTATGTTTCAGTCCAACCACTGCATCCCATCTTAACTAAAACTTTAACATGTCGCTGCATCAACTATGTCACATTGTTTGATTGAATCAATTTGCAAACAAAACTTGTTTtcaccacatacagtgccttcagtatTCATGCTCCTTGACATactccacattttgctgtgttataGCCTTAAttgaaaatggattaaatcaataTTTTAAAACCCATCAACACACAaaaccccaaaatgacaaagtgaaaacatgtatttttaatttCTTGTgattttattgaaaatgaaatacataaatacaagCATACacgtaacatgatgcagccaccaccatgtttgaaaatat
>TU208835
GTGCCCCAGCAAGACATTCGGAGGATTTGATTCAACAAAGGACTTGCCTGATGATGTCATAACATTTGCGAGAGGACACCCAGCGATGTTTAACCCCATCTATCCCATCAACAACCGACCAATCATAGTCAAGACGGACACGGACTACCAGTTCACACAGATAGTGGTGGACAAAGTGGAGGCTGAGGACGGACAGTATGACGTCATGTTCATaggcacagACATGGGTAAAGTGCTGAAGGTGGTGTCCATCCCCAGAGGGTCCTGGCATGACCTGGAAGAGGTTCTACTGGAGGAGATGACTGTGTTCAGGG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571821.2 False 5110 mRNA 0.48 17 74828267 74890826
TU208835 True 314 TUCP 0.45 2 74886098 74886500

Neighbor

gene id symbol gene type direction distance location
LOC110496107 LOC106561202 coding upstream 95585 74660359 ~ 74732682 (+)
LOC110496089 LOC105018423 coding upstream 298668 74519776 ~ 74529599 (+)
LOC110496053 LOC106561188 coding upstream 606737 74210463 ~ 74221530 (+)
LOC110496029 LOC106561185 coding upstream 629581 74178483 ~ 74198686 (+)
LOC110495996 LOC106561183 coding upstream 688765 74126223 ~ 74139502 (+)
LOC110496126 LOC106561207 coding downstream 19641 74910467 ~ 74962990 (+)
LOC118936821 LOC106561223 coding downstream 80412 74971238 ~ 74988691 (+)
LOC110496136 LOC106561223 coding downstream 100829 74991655 ~ 75145608 (+)
LOC110501950 LOC106561208 coding downstream 251176 75142002 ~ 75256839 (+)
LOC110496163 LOC106561209 coding downstream 388044 75278870 ~ 75305291 (+)
G184075 NA non-coding upstream 24453 74803595 ~ 74803814 (+)
G184072 NA non-coding upstream 35528 74792406 ~ 74792739 (+)
G184060 NA non-coding upstream 42599 74785432 ~ 74785668 (+)
G184055 NA non-coding upstream 46077 74781959 ~ 74782190 (+)
G184023 NA non-coding upstream 74639 74753366 ~ 74753628 (+)
G184332 NA non-coding downstream 128277 75019103 ~ 75034943 (+)
G184335 NA non-coding downstream 148939 75039765 ~ 75045926 (+)
G184341 NA non-coding downstream 166171 75056997 ~ 75057785 (+)
G184358 NA non-coding downstream 189106 75079932 ~ 75080163 (+)
G184359 NA non-coding downstream 190995 75081821 ~ 75082029 (+)
G183361 NA other upstream 293241 74529649 ~ 74535026 (+)
G182144 NA other upstream 1203749 73622536 ~ 73624518 (+)
G182139 LOC106561173 other upstream 1218030 73606892 ~ 73610237 (+)
LOC110501876 LOC106561170 other upstream 1248192 73456669 ~ 73580075 (+)
LOC110496459 LOC106561246 other downstream 1276831 76167573 ~ 76181555 (+)
G185462 chkb other downstream 1542991 76433817 ~ 76434615 (+)
G185549 LOC106561235 other downstream 1643552 76534378 ~ 76606975 (+)
G185718 NA other downstream 1939587 76830413 ~ 76832500 (+)
G184122 NA non-coding upstream 4980 74878646 ~ 74881118 (+)

Expression


Co-expression Network