Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110501950 |
| gene name | LOC106561208 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 75142002 ~ 75256839 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-1-like isoform X7 |
| id | description |
|---|---|
| K04858 | CACNA2D1; voltage-dependent calcium channel alpha-2/delta-1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036955531.1 | False | 5412 | mRNA | 0.47 | 41 | 75142002 | 75256839 |
| XM_036955521.1 | False | 5603 | mRNA | 0.47 | 41 | 75147173 | 75256839 |
| XM_036955523.1 | False | 5514 | mRNA | 0.47 | 40 | 75147173 | 75256839 |
| XM_036955525.1 | False | 5585 | mRNA | 0.47 | 39 | 75147173 | 75256839 |
| XM_036955529.1 | False | 5570 | mRNA | 0.47 | 39 | 75147173 | 75256839 |
| XM_036955534.1 | False | 5496 | mRNA | 0.47 | 38 | 75147173 | 75256839 |
| XM_036955538.1 | True | 5481 | mRNA | 0.47 | 38 | 75147173 | 75256839 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118936821 | LOC106561223 | coding | upstream | 153311 | 74971238 ~ 74988691 (+) |
| LOC110496126 | LOC106561207 | coding | upstream | 179012 | 74910467 ~ 74962990 (+) |
| LOC110496116 | LOC106561204 | coding | upstream | 251176 | 74828267 ~ 74890826 (+) |
| LOC110496107 | LOC106561202 | coding | upstream | 409320 | 74660359 ~ 74732682 (+) |
| LOC110496089 | LOC105018423 | coding | upstream | 612403 | 74519776 ~ 74529599 (+) |
| LOC110496163 | LOC106561209 | coding | downstream | 22031 | 75278870 ~ 75305291 (+) |
| LOC118942025 | NA | coding | downstream | 296410 | 75553249 ~ 75554613 (+) |
| lep | LOC106561227 | coding | downstream | 308640 | 75565479 ~ 75567166 (+) |
| LOC110496192 | LOC106561214 | coding | downstream | 366406 | 75623245 ~ 75634823 (+) |
| gcsha | LOC106561216 | coding | downstream | 399340 | 75656179 ~ 75661643 (+) |
| G184387 | NA | non-coding | upstream | 9879 | 75131916 ~ 75132123 (+) |
| G184386 | NA | non-coding | upstream | 10624 | 75131145 ~ 75131378 (+) |
| G184384 | NA | non-coding | upstream | 12260 | 75129534 ~ 75129742 (+) |
| G184376 | NA | non-coding | upstream | 20588 | 75121174 ~ 75121414 (+) |
| G184365 | NA | non-coding | upstream | 52856 | 75088902 ~ 75089146 (+) |
| G184689 | NA | non-coding | downstream | 72577 | 75329416 ~ 75329742 (+) |
| G184690 | NA | non-coding | downstream | 73070 | 75329909 ~ 75331362 (+) |
| G184691 | NA | non-coding | downstream | 74587 | 75331426 ~ 75331660 (+) |
| G184699 | NA | non-coding | downstream | 90811 | 75347650 ~ 75347911 (+) |
| G184722 | NA | non-coding | downstream | 97059 | 75353898 ~ 75354438 (+) |
| LOC110496136 | LOC106561223 | other | upstream | 54595 | 74991655 ~ 75145608 (+) |
| G183361 | NA | other | upstream | 606976 | 74529649 ~ 74535026 (+) |
| G182144 | NA | other | upstream | 1517484 | 73622536 ~ 73624518 (+) |
| LOC110496459 | LOC106561246 | other | downstream | 910818 | 76167573 ~ 76181555 (+) |
| G185462 | chkb | other | downstream | 1176978 | 76433817 ~ 76434615 (+) |
| G185549 | LOC106561235 | other | downstream | 1277539 | 76534378 ~ 76606975 (+) |
| G185718 | NA | other | downstream | 1573574 | 76830413 ~ 76832500 (+) |
| LOC110502025 | LOC106573403 | other | downstream | 1890814 | 76863449 ~ 77160850 (+) |
