LOC110496163 (LOC106561209)


Basic Information

Item Value
gene id LOC110496163
gene name LOC106561209
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75278870 ~ 75305291 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571914.2
GTTTCTACTAAGAGGCATCTGTGCTGTAGCTGAGTGAACAACCCCAGTACCTCCGTCCCGCTGTCTGGACCTTGTCAACGAAAGACAACACCGTTACTATTATTGGGATATCAATAATCGTTTATAACGTGAACAGCTTTTGCAGCAACTATGTGGATTTACAACATTATTTTTACTCTCTTAATCGTCCGTTATTCAGagtgcaGGAGGAATGCATTACAGGACTACAAGAGGAGTGATGGCGTGAGATTGGTCCAACTGCCAGACTCTGCCCTCCATACCAAAAGCAGGAAGTTGAGCATTGTGAAGTGTGCCCGTGGTTGCAGCCGCAACAAGATTCTGCTCTTCACCTGCAGaGCGTTCTTGTATGATCAGAAAAACAGGAAATGCCAGTGGCTGTCGTTTGACAGGAACTCACCAGGAGTCCAAAGCCAACATGACTTCAACTACCAACTCTACCAGAAGAAAGCCTATGTGCAGGAGTGCATAGTGGGGACAGGAGTGAACTACAGAGGGAGAAGGTCTGTAACGGCCAGTGGAATCAGGTGCCAAGCCTGGGCCTCTCCTTTCCCTCATGAACACAATTTCCTACCAAGGAAGAACAGGAAGAAGGAGCTGACAAACAACTACTGTCGTAACCCTGACAACGCTATTTCAGGACCATGGTGCTTCACTACAGACCCCAACGTTAGACACCAGGTCTGTGGAGTACCTGAGTGCTTACAAGTGGAGTGTGTGAGCTGTAATGGGGAAAGTTACAGAGGTCCCATGGATCACACAGAGACGGGACGGGAGTGTCAACGCTGGGACCTAGAGGAACCACACAAACACCTCTTCCACCCcaagagGTATCCTGATAAAGGCCTAGATGACAACTATTGTAGGAACCCAGATGGACGTCAACGACCGTGGTGTTTCACCCTGGATGCACACACATCCTGGGAGTACTGCAACATCACAGCCTgccCCTCAGACAGTGTGGGAGAGGTAGATGTGACTACCGGGTGTTTCCTGGGTCGAGGTGAGGGCTACAGAGggacagtagcagtaacaccCAGTGGGGTGACCTGTCAACGCTGGGACTCACAGTACCCCCACAACCACACTTACATACCCCAGGACTATCGCTGCAAagacCTGAGGGAGAACTACTGCAGGAACCCTGACGGCCTTGACCTCCCATGGTGCTTCACTTCAGACCCTAACGTTCGCAAGGCATTCTGCACCAACATCCTCCGCTGTGGCACACAGAATACTGAACCCCATGACTGCTATGAGGGCAACGGAGAGAGCTACAGAGGAGAGGTGTCGAGGACCAGGTCAGGTCTTCCCTGTTCCCTCTGGAGAGACCACAGTTGGGACAGAGATGCAGCGGTGGTGGGACAGGAGGCGAGTTTCTGTAGgaacccagacagagacacacatggCCCCTGGTGTTATACTAACAGCACTGCTATACCCTGGGACTACTGCAGCATCAAACcatGTGTACCATCAAAGAACACCATTCCACAGAGAGTGGAGGTGTCCAATGTGTCATGTTTCATCCATAAGACGACCAGGATAGTAGGAGGAGCTCCAGTCGCCATCACAGACGGAAGCTGGATGGTCAGCATACAgaaacgGTCCAGTCACTGGTGTGGAGGTTCTCTCATACGAGAGGAGTGGGTCCTCACTGACAGACAATGCTTCTCCTCATGTGTTCCAGACCTGAGTGAGTATCGTGTGTGGTTAGGTGTATCAGACCTTCGTGGCTTGGCTCCTAACAGCTCCTTCAGACAGGAAGTCTCCATCTCCCATGTGATCTGTGGTCCTGAGGGCTCCAACCTGGCCCTCATACGGCTGGCCCAGCCTGCCCTCCCTGCAGACAGTGTCCACACCATTCAGCTGCCGGTGGCTGGGTGCTCTATTGTTGATGGCTCGATGTGTAGCATGCATGGATGGGGTGAAACcaaagGTACGGGTCATGAAGGTGTACTGAAGGTGGTCCATCTGCCCATGATCAGTAATGAGAGGTGTAGTGAACAACACAGAGGGAACCTCCACATCACAGACACCAAGATTTGCGCTGGGGGGAAGAAGGACGAGGGCGTCTGTGAGAGGGACTATGGCGGCCCCTTGGTGTgccaggaaggagagagcagggtcATAGTGGGGGTCAGTGTCCATGGCAGAGGCTGTGCCCGTGCCAATCGGCCTGGCATCTTCATCAACGTCCCCTTCTACACCCAGTGGATCCACAAGGTGTTCCGACACTACCCCGAACCTCAGATCAACTAGGCACTACCCTCAGATCAACTAGGCACGACCCTCAGATCAACTAGGCACGACCCTCAGATCAACTTGGCACTACCCTCAGATCATCTAAATATCAAATACAGATAAACCTTTATCCCATCATCAATTAGAGACTCACTCGACCCCCCTTGATATAGATACACCTGTGGCTCAGTCACGTAAGGACCAACTGAGTCCCTGTGCATTTGAAAGAGGGAAAGCTCCAGCCATACAGAAAGATATCAAACGCAACTCCAAACTTGATTCTGGAATTCAGACTCATGGGCTTCTATATGTCTTTGGAGTGGACCTGTGAAGTGGAATGTAATTGTGTTGATCAGACTGCGGGATCGATCCTTTAGATAATATAAATATGTAGTGTTACAGACATGCTACTAAGGACAACAGAGGTGTGGATATGTGGTTGGCTAAACACCATGTGCTGAAGCTGGTAAGGTTTGGATGTTCAGGACTCATATTGTACACAATCAGTAAGAATCTGTAGACAATGTGGtaataggggagagtggggtaaattgagacaccccttgtttctaggaaaccatataCAAAATTAATAATGTGACCACAtttttaggaagaggtcatcatttcatggagtcagAAGG

Function

NR:

description
hepatocyte growth factor-like isoform X2

GO: NA

KEGG:

id description
K05460 HGF; hepatocyte growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571914.2 True 2906 mRNA 0.50 18 75278870 75305291

Neighbor

gene id symbol gene type direction distance location
LOC110501950 LOC106561208 coding upstream 22031 75142002 ~ 75256839 (+)
LOC110496136 LOC106561223 coding upstream 133269 74991655 ~ 75145608 (+)
LOC118936821 LOC106561223 coding upstream 290179 74971238 ~ 74988691 (+)
LOC110496126 LOC106561207 coding upstream 315880 74910467 ~ 74962990 (+)
LOC110496116 LOC106561204 coding upstream 388044 74828267 ~ 74890826 (+)
LOC118942025 NA coding downstream 247958 75553249 ~ 75554613 (+)
lep LOC106561227 coding downstream 260188 75565479 ~ 75567166 (+)
LOC110496192 LOC106561214 coding downstream 317954 75623245 ~ 75634823 (+)
gcsha LOC106561216 coding downstream 350888 75656179 ~ 75661643 (+)
gtf3c6 gtf3c6 coding downstream 407766 75713057 ~ 75718243 (+)
G184435 NA non-coding upstream 59999 75218327 ~ 75218871 (+)
G184421 NA non-coding upstream 83350 75194729 ~ 75195520 (+)
G184387 NA non-coding upstream 146747 75131916 ~ 75132123 (+)
G184386 NA non-coding upstream 147492 75131145 ~ 75131378 (+)
G184689 NA non-coding downstream 24125 75329416 ~ 75329742 (+)
G184690 NA non-coding downstream 24618 75329909 ~ 75331362 (+)
G184691 NA non-coding downstream 26135 75331426 ~ 75331660 (+)
G184699 NA non-coding downstream 42359 75347650 ~ 75347911 (+)
G184722 NA non-coding downstream 48607 75353898 ~ 75354438 (+)
LOC110496107 LOC106561202 other upstream 564756 74660359 ~ 74732682 (+)
G183361 NA other upstream 743844 74529649 ~ 74535026 (+)
G182144 NA other upstream 1654352 73622536 ~ 73624518 (+)
LOC110496459 LOC106561246 other downstream 862366 76167573 ~ 76181555 (+)
G185462 chkb other downstream 1128526 76433817 ~ 76434615 (+)
G185549 LOC106561235 other downstream 1229087 76534378 ~ 76606975 (+)
G185718 NA other downstream 1525122 76830413 ~ 76832500 (+)
LOC110502025 LOC106573403 other downstream 1842362 76863449 ~ 77160850 (+)

Expression


Co-expression Network