LOC110496174 (LOC106561210)


Basic Information

Item Value
gene id LOC110496174
gene name LOC106561210
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75356571 ~ 75361242 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571925.2
tctctctctctctctctctctctctatttttccctCACTGAGACTAAGGAAAGGACAAAAATACTCTCTCTCCTTCGACTgctttttcctctccctctctgcttctctttctCTAAAGCGTAGCTCCGGCAGCACTgcgctccctctcctcctcctcctctctctctaaccagcacccccatctctccacctcccccccaccccctcaggAAGAATACTGCTAACTGTGCTGCACGCGGCAGGCTGCAGCTGCTATAGCCACGGCCAGGCAAACCATCGCAGGGAGAGGaccagaagagaagagagaaaaagagaggacagTGGGATGACTGCGTCAGGAGTCCTttagctttttctctctctctttctccatccatcAGAGCGGGGCGAATCAGGCACCAGCTAGCCTTCGGCAAAGTCACCGAGACGGAGGGCTCTCAGCCgacatacacacagaaacacagaaacacacacacactcacgaggACCTGCAGAGACcggtggatttaaaaaaaaatttattGTCATTTTTTTCCTTTCTGCTCGGTGTGTCTGGCTTTTACTGCTTGATGGAGCAGTGTGATTCGTCAACAGAGGGGCCGTGTGTCTGCGGCtgcaggcagggagagggggagaggaggagggctgggGGACGCCAGTCACCTGCTTAGCTTAACCCACACGGCCTGTCTTTTCCCACCGAGCCTCTAGTCTCTACACGCGGCTCTGCTCCACTCTCACCACCGGCTAACAGGAGACATTTTGTTCCATTAGTTAACACAGGGACATTACCACCACTTTCCAGATTGAAGGAGAAGAACTGAATATAAATACACTTTTCACATTTCTGTTTTTCCATGGAAAGGGAAATATACATGACTCTGGTTCCTGATGGTTTTTTGTGATATTCAGAAAGGACGAAATAAGGGACCGTTTAAGAACTAATGAGCGTCACCCAGTCTCGTCGATGGCGTGGCGAATCCTGTCCTTGCTCCAGCCAGGGTAGGAGGGTGGTGCGTCCTCCTCTAGTGTCCGTCTCGCCCCAACATGCTGAACAATGAGCCCTCCGCAACATGAGTACTGTGGGCCGGGTTTCTCTGCAGCCCACCTGGAACGCAGCCCTGCTCGCCCTGCTAGCCCTCACCATGGTGCCAGCTCTCAGTGTGTGCCAGCCTGCCGGCCTGGGTCCTCCCCCCAACCCCCAGAACTGTCCGGTGGTGTGCTCCTGCACCAACCAGATCGGTAAGGTTGTGTGTACACGCCGTGGCCTGGTCAGGGTTCCCCCCGGGATCCCCACCAACACCAGATACCTCAACCTGATGGAGAACAGCATCGAGACCATCCAGGCTGACACCTTCAGACACCTACACCATCTGGAGGTGCTGCAGCTGGGCAGGAACGCCATCAGGCAGATTGAGGTGGGGGCCTTCAACGGCCTCACCAGCCTCAACACCCTGGAGCTGTTTGACAACAGACTGACGGGGATCCCCAGCGGGGCTTTTGAGTACCTGTCCAAGCTGAGGGAGCTGTGGCTGAGGAACAACCCCATCGAAAGCATCCCCTCCTATGCCTTCAACAGGGTGCCCTCTCTGATGAGGCTGGACCTAGGGGAGCTCAGGAGGCTAGAGTACATTTCTGACGGGGCCTTTGAGGGCCTGCAGAACCTCAAGTACCTGAACCTAGGGATGTGTAACCTCAGGGAGATGCCTGTCCTGTCTCCCCTGACTGGCCTGGAGGAGCTGGAGATGTCTGAGAACACTTTCCCTGAGATGAAGCCTGGCTCTTTCCGCGGCCTGCGCTCGCTGCAGAAACTCTGGATTATGAACTCTGGGATCACCGTGATCGAGAGGAACGCCTTCGATGACATCACAGCGCTGGTGGAGCTGAATCTAGCCCATAATAACCTGTCATCTCTCCCCCACGACCTCTTTGCCCCGCTGCAGTACCTAGTGGAGCTTCATCTCCACCACAACCCCTGGAGGTGTGACTGTGACGTGGTCTGGCTGTCCTGGTGGCTCAGGGAGTACATCCCCACTAACTCCACCTGCTGCGGCCGCTGCCACTCCCCTGCCCACATGAGAGGACGATACCTGGTGGAGGTGGACCAGACCACATTCCAGTGCTCTGCTCCCTTCATCCTGGATGCTCCAAGGGACCTCAACATCTCTGCAGAGAGAGTGGCTGAGCTCAAGTGTCTTACGGCCGCCATGTCATCGGTCCGATGGCTGCTTCCTAACGGGACCGTTCTGACCCACGGCTCGTCTCATCCTCGGATCTCTGTCCTCAATGATGGAACGCTCAACTTCTCCAACGTTTTGCCATCGGACAAGGGTGTCTATACTTGCATGGTGACTAACATGGCAGGTAACTCCAACGCCTCAGCCTACCTGAATGTCAGCAATGCCGAGCTCAACACCTCCAACCTGTCCTATTTCACTACAGTGACTGTGGAGGTGCTGGAGCCCACCGTAGAAGAGACCCCCAAACCCAAACCCACAGTCCCAGCCTCGCCCTCAGTGTTCCAGCCCGTCTTCATCTCCACGCCCACCATGCTGCTCCAGAGCACCCAGACCCCCCGCCAGGTGTCTCTCCCCACAGCCCGTGGCCCCACCCACCCCTCCGCCAGCCTGGACGAGGTCGTGAAGACAACCAAGATCATCATTGGCTGCTTCGTTGCCGTGACGCTCCTTGCCGCTGCCATGTTGATCGCCTTCTACAAGCTGCGTAAGCGGCACCAGCAGCGGAGCACGGTGGCAGTGGCGCGGACCATCGAGATCATCCAAATGGATGAGGAGGTTCCCGAGGTTCCACCGGCCAGGTCAGGTTCTAGCGAGTCTGAGGAGATGGGGCTGGCTCTGCCCACCATCTTAAAAGCAAGATACATCTCATCATCCTCATCGTCCtcccacagagacagagacagagacaaagacagagacagagacagggacagagctgCCTATGGGGCTCACTGGACCCATAACAACCTGGGAAACTCCCTGCACCGTTCCTCCAGCCGCCAGCATCATCAGCAGCACCACCACAGCCTCATCAGCACCATCGCAGAGCCCTACGTCATTAAGACAACTCACACCAAGGAGAAGGTCCAGGAGACCCAGATCTAAGGGACTCATGCTGGCCTTACTGTGGATCTAACTGTGTGGATCTAACTGTGTGGATCTAACTGTGGATCTAACTGGGTGGATCTAACTGGGTGGATTTCTATATGGATCTgactctactccctcctctcttcctctcctcactgctcacCAGTCCATGCAATAGAATGCACAAAGAAGACGGTAACTTTCTTTTGTACAGAGTGCAAAATGGAGACAGTTTTATCTATCTTGTACATGCTTATACATAAATatagaaatgtaaaaaatatacatCTATATAACTTAATCTAATGGTGGTGTTGGGATTATGTATCAAAGAAGAAAGTAaaatttaaactattttctaatAACTTGTAAGTTCTATTTAAAAGCGAGAGATGTTGAGGTCTCGATGATGGTATGTTTGATTGATTGAGGGAGGAGCTGTCTTGAGGGAAACTGTTATTTTTGTCATTTAGACCACTTAGGATGTAGTAAAAGCCCTTTATACCCACAGCAGTTTATAAAACAACAAGCCCTAACATCAGATCAGGCTTCGCAGGTTCATCTCATAAAAGCGGCAGTTTGTACTGTGCCAAACGTTACAAATACAATAAAGGACTCCGGAAGATTATGAAAACCAACAGCCACATCCAAGCAAAAtctagacagaaagacagagagtaattTGTCGAGGGAGAGACGTAGAGAGAAGAGCATAGATTTTGCTGTTCAGTAGCTATCAGCCAAATGGTTTTAGACTGCAGTGAATTTCTGCAGCTAAGGTTTAACCCTTTGTTTTCCGGAGCAAAGCTACACATCTATCTAAAAACAGCTCTTTATGTTACTGAATCTAAACCCGTTTAGTACGGTTCTATTTGATTTATCCCAGGTCCCCTTGGCTAAGATGAAGGACAGGCTATTATGAACAGAGATTTGGTGTGGTTTCTTCATGCAGATTTAGGTTGCATAAGgtattgttgttttttatttttgtctTGGGTTGTGACATGCTTCTTAATGGCATGTGTAGTGCTTAGGGTTAACGTAGTGCTGCATTACAGTggttctctgtctgctctctgtagGGGCTCGTTCTAATGGTAATCCCTCACAGTTACAGACGTGGTGCAGAGAGACTGGGGTTTGCTGACCAATCTGCTTTTGGAAGAAAAAAAGGAGCTGGGCTGAAATTAAATGAATGTCTGGACATTGGGCTTGTTTCTCTATGGACTTCATTGAAACAATGAAATTGTTTTTTCTTTTCCTTATTTTGGGTATTATTTCGAGCAACACTATTTTTATGGGGTGTCTATAAGGAGGCTACAAAAAATAAAACCTTTGGTTTGTATTTCTCTACTTGGA

Function

NR:

description
leucine-rich repeat-containing protein 4-like

GO: NA

KEGG:

id description
K16351 LRRC4, NGL2; netrin-G2 ligand

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571925.2 True 4469 mRNA 0.51 2 75356571 75361242

Neighbor

gene id symbol gene type direction distance location
LOC110496093 LOC106561201 coding downstream 762145 74533285 ~ 74594426 (-)
LOC118937295 NA coding downstream 848466 74501414 ~ 74508105 (-)
LOC110496063 LOC106561200 coding downstream 883255 74452532 ~ 74473316 (-)
LOC110501892 LOC106561189 coding downstream 923349 74241237 ~ 74433222 (-)
LOC110496015 LOC106561186 coding downstream 1189221 74157073 ~ 74167350 (-)
LOC110501959 rbm28 coding upstream 217608 75578850 ~ 75582017 (-)
LOC118936395 rbm28 coding upstream 223315 75584557 ~ 75585136 (-)
LOC110496186 LOC106561212 coding upstream 234124 75595366 ~ 75607735 (-)
LOC110496199 LOC106561215 coding upstream 283099 75644341 ~ 75656164 (-)
LOC118942024 NA coding upstream 300518 75661760 ~ 75663665 (-)
G184731 NA non-coding downstream 238 75355887 ~ 75356333 (-)
G184730 NA non-coding downstream 2122 75354009 ~ 75354449 (-)
G184717 NA non-coding downstream 9617 75346715 ~ 75346954 (-)
G184715 NA non-coding downstream 12212 75344152 ~ 75344359 (-)
G184713 NA non-coding downstream 12938 75343416 ~ 75343633 (-)
G184732 NA non-coding upstream 8827 75370069 ~ 75370289 (-)
G184743 NA non-coding upstream 17918 75379160 ~ 75379382 (-)
G184757 NA non-coding upstream 25048 75386290 ~ 75386515 (-)
G184769 NA non-coding upstream 34354 75395596 ~ 75395876 (-)
G184771 NA non-coding upstream 35186 75396428 ~ 75396897 (-)
G184006 LOC106561202 other downstream 623934 74730872 ~ 74732637 (-)
G183538 NA other downstream 1245780 74106883 ~ 74110791 (-)
G183096 NA other downstream 1363026 73993078 ~ 73993545 (-)
G182882 NA other downstream 1680148 73676212 ~ 73676423 (-)
G182708 NA other downstream 2010724 73344950 ~ 73345847 (-)
G186002 NA other upstream 516117 75877359 ~ 75878060 (-)
tnni1c LOC106561253 other upstream 623917 75985156 ~ 75989573 (-)
adm2b adm2 other upstream 731928 76093170 ~ 76099909 (-)
G186197 LOC106561241 other upstream 912282 76273524 ~ 76293392 (-)

Expression


Co-expression Network