LOC118942025


Basic Information

Item Value
gene id LOC118942025
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75553249 ~ 75554613 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037883.1
CAGATCTTTTTGCGGTCTGGGCTTGCTGTTAACACACCTCAACCCAGGAAGCCCTTACCCCAAAAAGCATCTGCAGTCGACCTTAGCATCACAAGCTATTCTCCACAATGTTATGGAACGCAAAGGCGCAGtcatctagcagactcccatccagaaagacccacaggagcaaccagggtcaacTGTCCCgcccaagggcacatcgacagatccCCCACCCAGTCGACTTGGGGACCTAAACCAGTGACCTCTCCGCCACTGGGCCAATGCTCCCAACCGCCAGGACACCCACTGCCCCCAATCATCCAA
>TU209706
ACCTTAGCATCACAAGCTATTCTCCACAATGTTATGGAACGCAAAGGCGCAGtcatctagcagactcccatccagaaagacccacaggagcaaccagggtcaacTGTCCCgcccaagggcacatcgacagatccCCCACCCAGTCGACTTGGGGACCTAAACCAGTGACCTCTCCGCCACTGGGCCAATGCTCCCAACCGCCAGGACACCCACTGCCCCCAATCATCCAAGATAACCCCACAGTCCCCCCTGAATAACCTCCCTCTACCAGCCACCATCCCCTTCCAACACAACCAAAGCAACTACCCACCTGATGTGcaaggtccacccactggggagccaagcatAGTCAATCAGAAGGATTTCTTCACCCACAAAAGgactttattacaaacagaaatactcttcagcatcccccctcccccctcagacgatcccacagatgaagaagtcagatgtggaagtcctgggctggattgcttacacgtggtctgcgttgtgaggccggttggatttattgccaaattctctaaagagaaatgaacattcaattctctggcaacagcgctgttggacattcctccagttagcatgctaattgcacactccctcaaaacgtaAGACATGttaggcattgtgttgtgtgacaaaactgtacatgttagagtggccttttatcaacacaaggtgcacctgtgtaacgatcatgttgtttaatcagcttcttgatatgtcacacgtgtcaggtggatggattactttggcaaatgagaaatgctcactaacagggatgtaaacaatttTGTGCAcataatttgagagaaatacgttttttttgcGTATGtaaatttctgggatattttatttcagctcatgcaaAAGGGGACCAAAACTTTGcttgttacatttatatttttgttcagtagaaaAACAAAAGACATCAAGGACAATAAA
>TU209707
ACCTTAGCATCACAAGCTATTCTCCACAATGTTATGGAACGCAAAGGCGCAGGTGTGTGTGACCCAtcatctagcagactcccatccagaaagacccacaggagcaaccagggtcaacTGTCCCgcccaagggcacatcgacagatccCCCACCCAGTCGACTTGGGGACCTAAACCAGTGACCTCTCCGCCACTGGGCCAATGCTCCCAACCGCCAGGACACCCACTGCCCCCAATCATCCAAGATAACCCCACAGTCCCCCCTGAATAACCTCCCTCTACCAGCCACCATCCCCTTCCAACACAACCAAAGCAACTACCCACCTGATGTGcaaggtccacccactggggagccaagcatAGTCAATCAGAAGGATTTCTTCACCCACAAAAGgactttattacaaacagaaatactcttcagcatcccccctcccccctcagacgatcccacagatgaagaagtcagatgtggaagtcctgggctggattgcttacacgtggtctgcgttgtgaggccggttggatttattgccaaattctctaaagagaaatgaacattcaattctctggcaacagcgctgttggacattcctccagttagcatgctaattgcacactccctcaaaacgtaAGACATGttaggcattgtgttgtgtgacaaaactgtacatgttagagtggccttttatcaacacaaggtgcacctgtgtaacgatcatgttgtttaatcagcttcttgatatgtcacacgtgtcaggtggatggattactttggcaaatgagaaatgctcactaacagggatgtaaacaatttTGTGCAcataatttgagagaaatacgttttttttgcGTATGtaaatttctgggatattttatttcagctcatgcaaAAGGGGACCAAAACTTTGcttgttacatttatatttttgttcagtagaaaAACAAAAGACATCAAGGACAATAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037883.1 False 309 mRNA 0.56 2 75553249 75553889
TU209706 False 954 lncRNA 0.46 2 75553328 75554613
TU209707 True 968 lncRNA 0.50 2 75553328 75554613

Neighbor

gene id symbol gene type direction distance location
LOC110496163 LOC106561209 coding upstream 247958 75278870 ~ 75305291 (+)
LOC110501950 LOC106561208 coding upstream 296410 75142002 ~ 75256839 (+)
LOC110496136 LOC106561223 coding upstream 407648 74991655 ~ 75145608 (+)
LOC118936821 LOC106561223 coding upstream 564558 74971238 ~ 74988691 (+)
LOC110496126 LOC106561207 coding upstream 590259 74910467 ~ 74962990 (+)
lep LOC106561227 coding downstream 11590 75565479 ~ 75567166 (+)
LOC110496192 LOC106561214 coding downstream 69356 75623245 ~ 75634823 (+)
gcsha LOC106561216 coding downstream 102290 75656179 ~ 75661643 (+)
gtf3c6 gtf3c6 coding downstream 159168 75713057 ~ 75718243 (+)
LOC110496239 LOC106561219 coding downstream 165914 75719803 ~ 75722571 (+)
G184896 NA non-coding upstream 521 75552379 ~ 75552728 (+)
G184893 NA non-coding upstream 4687 75548284 ~ 75548562 (+)
G184889 NA non-coding upstream 11881 75541143 ~ 75541368 (+)
G184884 NA non-coding upstream 22374 75530654 ~ 75530875 (+)
G184850 NA non-coding upstream 67309 75485720 ~ 75485940 (+)
G184914 NA non-coding downstream 21482 75575371 ~ 75575602 (+)
G184927 LOC106561212 non-coding downstream 38393 75592282 ~ 75596048 (+)
G184936 NA non-coding downstream 52281 75606170 ~ 75606650 (+)
G184938 NA non-coding downstream 55627 75609516 ~ 75609727 (+)
LOC110496116 LOC106561204 other upstream 666749 74828267 ~ 74890826 (+)
LOC110496107 LOC106561202 other upstream 839135 74660359 ~ 74732682 (+)
G183361 NA other upstream 1018223 74529649 ~ 74535026 (+)
G182144 NA other upstream 1928731 73622536 ~ 73624518 (+)
LOC110496459 LOC106561246 other downstream 613768 76167573 ~ 76181555 (+)
G185462 chkb other downstream 879928 76433817 ~ 76434615 (+)
G185549 LOC106561235 other downstream 980489 76534378 ~ 76606975 (+)
G185718 NA other downstream 1276524 76830413 ~ 76832500 (+)
LOC110502025 LOC106573403 other downstream 1593764 76863449 ~ 77160850 (+)

Expression


Co-expression Network