LOC110496186 (LOC106561212)


Basic Information

Item Value
gene id LOC110496186
gene name LOC106561212
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75595366 ~ 75607735 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571935.2
GTGAGCTGAGCCGAACGAGccggctcactgaaaagagccgGAATGCTCATCGTTGTTTAAATCAGCGCCATTCGGATGTAGGCACGATTTCACCGGGTTGTCTAAGATATATAAATAACCCCTTTCGTGTGGGTTTGTTACATGTGTACCACCGTTTCTGATGAGTACTTCGGGGACGTTGGGGCGGGGCACTTTGGCACAAAACACGTTTTCACAGATCAAAGCCTTCACCACAGTTGCCTTACAGCACCACCTCCAGGCTCCCTAACCCTGCACTCTGAATCCCTGCTGTCACCATGCAAGCCCATAGGGTCACCGTTCACCGCATCAGCAAGACCATCACCTTGTACCTGAATGACGCAGCCTCACCTAAACCCTCCCCTGGCCCTCTGTCTGCCCTGAACGATGCAGCCAGTACCTCTCCATCCCTAGCCCTTACCTCTGCCCCAACCAAGCCCCTGCTGCTGATGCTGCCCTGGTTGGGGTCGCGACCTCAGGCTGTGGCCAAGTACTGTGAGATCTACTTCCGTACAGGCTTTGACGTGCTCATAGTGGAGAGTGCGgTGAGTCAGTTTCTGTGGCCTCGCTGGGGCCTGGACTACGGGGCGAGGGTACTAGATCTCCTGCAGAGTGACTGCTTTGTGTCACGCCCCTTGCTCGTGCACGCCTTCTCCATAGGAGGGTACACCTTCACCCAGCTGTTGGTGCATGTGTCCCGCGACACACAGAAGTACTACGGCTTCACTCAGAGGATCAGAGGCCACATCTATGACAGCCTTGTGCTGGGCTCACTGGAGAGGATGGCTACAGGTCTAGGTAAGATCCTGCTCCCCCGGCTGGAGAGCCAGGTGAAATGGGCCAGTATGCTCTACTTCAGAGCCTTCAAACACCACACAGTCGACTACTTCAACAACGGCATTGATGTCTTCTGGAATAACCCTGTCACCGCACCCGCCCTCGTCTTCTTCTGCCAGAACGACGCACTGTGCGACCCGGAGGGCATGGAGGAGATCATCGCCTATTGGAGAAAACGAGGGATGGAGGTGACAGACAGGAAATGGGAGGAGTCAACACATGCAGGCCACCTGAGACAACACCCCCAGGAGTACCTGTCTACCTTGGAGACCTTCCTAAAGACTCTCGGTATGGTCCCTCTCAAGGCCAAGATGTGACGCTAGGCAGGACCCACACAGCTGTGGTCCGGTCCAGAAACAATCCCTATCCCTATCCACTACCCCTTAGTCCCTCGGCATGGCCCCCAGCAAGGCCAAGTGACAACAGGGCACAGCTGTGGTCCAGTCCAGAAATAGCCTCTAGCCCCTACCCCCTAAGCACTCAGGACCCCCTCAAGACCAGGATGTGACTGCAGGACGTGACAGTTTGCACTTCACTTACCTACAAGTTCCACGTTTGAGTACCCTAGGTATAGTGGGGACTTATTGTATACAGTTTTACATTCTTGGAAAAACATTAAATTAACTCTTGTTTAGTAGA
>XM_036955575.1
gcctcacaagccagatgaagctagctggctgcttataacgttataTTTAGGCAACGGGGTTaataagtagctggctagctatttattttcatgaacaggagttcaatttcaataggcaaacaacaagttgctacctagctaatacttactcacatgGATTCCTACATCATTGCAAGAATAATGAGAaggactgcagtttctactggtcattgttttcagtcTGGTtctattggtgctagctaggtaccaaactaaagctagctagctaatccaggagttgcggtcgaacaaataatgctttattaccaaatcaaatcaataccaacgcggtattgcaaacacatcgttcgtggccggtgtttacTTGTTTGCAGAcatttttgtacagctttgacagtgttACTGATAGTAGTGTGGCGCTTGGTTTACACGTacaaattcagaacacacaacattctatagtagagctgtgttatttgacgtgtatcttttttggcGTTCCATATTACACCAGCTCTCGAAGGTGTCCTGGTCACGTGTCAGCCAGGTTTAATTGAACTATTCAAGGCAAATAAAAGGAGCTTTGTTTGGATAAAAATTAGAGTGCACATCTAACCACGGCATGCATAATGGGTTATGTAAGCTCGTTGTTTAAATTCGCTAACCATCAGCGCCCCCATTCTGATGTAGGCACGATTTCGCCGGCTGTGGCTACTGATAATAGTGGTGGCGCTTGGTTTACACGTACACgttcagaacacacaacattctataatagagcTGTGTTATTTGACGCGTATCTTTGTTGGCGTTCCATATTACACCAGCTCTCGTAGGTGTCACGTGGGTCGCGCGCCAGCCAGGCTTAATTGAACTATTCAAGGCAAATACAATGGGCTTTGTTTGGATAAAAATTAGAGCGCTCATATAACCACGGCATGCATAACGGGTTATGTAGCTCGTTGTAGTGATGGGTCGTTCGCGAACGACTCGGCTCTAAGAGCCGGCTCGCATATCAGAAGAGCCGAATCTATTTATAAAACAATTAAGATATGAATAATCAAAATATTTAAAAGAATAGAATTAACTAATTCAAATAACGAATGGATGCTGTTTGACgagagagcaactggggatgcagcaTGAAGGGATCCCTTTagcagatgccataatggaggtCCGATCCTATTTGGAGGAGCCACTCCAaagatctgcagatcctctgagctggtggaagaacaaggcctctgtctacccacggcttactaaagtcatgacGGGGAGACTCTGCATTGTGGCCACATCCGTTCCCTCTGAGGGGGTCTTCTCAAAAACGGGAAAAACaattactgagagaagaaaccgcatcagcccctcgaaagtgaggcagcttgcatttctgaatgcaaatcCCTCATAAAAGCAAAATATGATCAAAGCCTTCACCACAGTTGCCTTACAGCACCACCTCCAGGCTCCCTAACCCTGCACTCTGAATCCCTGCTGTCACCATGCAAGCCCATAGGGTCACCGTTCACCGCATCAGCAAGACCATCACCTTGTACCTGAATGACGCAGCCTCACCTAAACCCTCCCCTGGCCCTCTGTCTGCCCTGAACGATGCAGCCAGTACCTCTCCATCCCTAGCCCTTACCTCTGCCCCAACCAAGCCCCTGCTGCTGATGCTGCCCTGGTTGGGGTCGCGACCTCAGGCTGTGGCCAAGTACTGTGAGATCTACTTCCGTACAGGCTTTGACGTGCTCATAGTGGAGAGTGCGgTGAGTCAGTTTCTGTGGCCTCGCTGGGGCCTGGACTACGGGGCGAGGGTACTAGATCTCCTGCAGAGTGACTGCTTTGTGTCACGCCCCTTGCTCGTGCACGCCTTCTCCATAGGAGGGTACACCTTCACCCAGCTGTTGGTGCATGTGTCCCGCGACACACAGAAGTACTACGGCTTCACTCAGAGGATCAGAGGCCACATCTATGACAGCCTTGTGCTGGGCTCACTGGAGAGGATGGCTACAGGTCTAGGTAAGATCCTGCTCCCCCGGCTGGAGAGCCAGGTGAAATGGGCCAGTATGCTCTACTTCAGAGCCTTCAAACACCACACAGTCGACTACTTCAACAACGGCATTGATGTCTTCTGGAATAACCCTGTCACCGCACCCGCCCTCGTCTTCTTCTGCCAGAACGACGCACTGTGCGACCCGGAGGGCATGGAGGAGATCATCGCCTATTGGAGAAAACGAGGGATGGAGGTGACAGACAGGAAATGGGAGGAGTCAACACATGCAGGCCACCTGAGACAACACCCCCAGGAGTACCTGTCTACCTTGGAGACCTTCCTAAAGACTCTCGGTATGGTCCCTCTCAAGGCCAAGATGTGACGCTAGGCAGGACCCACACAGCTGTGGTCCGGTCCAGAAACAATCCCTATCCCTATCCACTACCCCTTAGTCCCTCGGCATGGCCCCCAGCAAGGCCAAGTGACAACAGGGCACAGCTGTGGTCCAGTCCAGAAATAGCCTCTAGCCCCTACCCCCTAAGCACTCAGGACCCCCTCAAGACCAGGATGTGACTGCAGGACGTGACAGTTTGCACTTCACTTACCTACAAGTTCCACGTTTGAGTACCCTAGGTATAGTGGGGACTTATTGTATACAGTTTTACATTCTTGGAAAAACATTAAATTAACTCTTGTTTAGTAGA
>TU210008
CTAATTCAAATAACGAATGGATGCTGTTTGACgagagagcaactggggatgcagcaTGAAGGGATCCCTTTagcagatgccataatggaggtCCGATCCTATTTGGAGGAGCCACTCCAaagatctgcagatcctctgagctggtggaagaacaaggcctctgtctacccacggcttactaaagtcatgacGGGGAGACTCTGCATTGTGGCCACATCCGTTCCCTCTGAGGGGGTCTTCTCAAAAACGGGAAAAACaattactgagagaagaaaccgcatcagcccctcgaaagtgaggcagcttgcatttctgaatgcaaatcCCTCATAAAAGCAAAATATGGTCAGTATTcctgtgtgctgctggttataacatggcaataaagaaTAGAGAAAAGAGGGAtgtttaatgttttaagt

Function

NR:

description
PREDICTED: zinc finger BED domain-containing protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571935.2 False 1494 mRNA 0.54 4 75595366 75605880
XM_036955575.1 False 2709 mRNA 0.49 4 75595366 75607735
TU210008 True 422 TUCP 0.42 1 75606227 75606648

Neighbor

gene id symbol gene type direction distance location
LOC118936395 rbm28 coding downstream 10230 75584557 ~ 75585136 (-)
LOC110501959 rbm28 coding downstream 13349 75578850 ~ 75582017 (-)
LOC110496174 LOC106561210 coding downstream 234124 75356571 ~ 75361242 (-)
LOC110496093 LOC106561201 coding downstream 1000940 74533285 ~ 74594426 (-)
LOC118937295 NA coding downstream 1087261 74501414 ~ 74508105 (-)
LOC110496199 LOC106561215 coding upstream 36606 75644341 ~ 75656164 (-)
LOC118942024 NA coding upstream 54025 75661760 ~ 75663665 (-)
LOC110501970 LOC106561217 coding upstream 80763 75688498 ~ 75701806 (-)
LOC110496262 LOC106561255 coding upstream 238806 75846541 ~ 75885181 (-)
ddx11 ddx11 coding upstream 293472 75901207 ~ 75915303 (-)
G185113 lep non-coding downstream 27183 75566145 ~ 75568183 (-)
G185089 NA non-coding downstream 56818 75538314 ~ 75538548 (-)
G185082 NA non-coding downstream 64452 75530604 ~ 75530914 (-)
G185070 NA non-coding downstream 83970 75511099 ~ 75511396 (-)
G185062 LOC100136012 non-coding downstream 97768 75497354 ~ 75497598 (-)
G185091 NA non-coding upstream 28596 75636331 ~ 75731310 (-)
G185092 NA non-coding upstream 114109 75721844 ~ 75725317 (-)
G185951 NA non-coding upstream 188509 75796244 ~ 75796452 (-)
G185952 NA non-coding upstream 188842 75796577 ~ 75798109 (-)
G185985 NA non-coding upstream 234866 75842601 ~ 75843476 (-)
G184006 LOC106561202 other downstream 862729 74730872 ~ 74732637 (-)
G183538 NA other downstream 1484575 74106883 ~ 74110791 (-)
G183096 NA other downstream 1601821 73993078 ~ 73993545 (-)
G182882 NA other downstream 1918943 73676212 ~ 73676423 (-)
G182708 NA other downstream 2249519 73344950 ~ 73345847 (-)
G186002 NA other upstream 269624 75877359 ~ 75878060 (-)
tnni1c LOC106561253 other upstream 377424 75985156 ~ 75989573 (-)
adm2b adm2 other upstream 485435 76093170 ~ 76099909 (-)
G186197 LOC106561241 other upstream 665789 76273524 ~ 76293392 (-)
si:dkey-234i14.6 LOC106561240 other upstream 714072 76321757 ~ 76341834 (-)

Expression


Co-expression Network