LOC110496192 (LOC106561214)


Basic Information

Item Value
gene id LOC110496192
gene name LOC106561214
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75623245 ~ 75634823 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571949.2
tggtgtgataACAGAAGGAAGATGCCAAACTAACAGCATTACAATGCAAAATCACAAGTTGTGCATTCTTAGCTTACAAAGAAGTTCCAAATTCCTTGTGATGTTTGTTCTATAATTTGTGATGTACTGGCTTCACTCTCACACTGACTATTGCTTTTATGTTAATCATGACAGAAGGGTTGGTTTCAACTCCAGCTGCAAATTACATCCAATACACTATATTGATCTGATAGTTAGTTCTATGCACAATACCACCCTCCTGTTAACGATTCGTTCTTACAGGCATATttatctgcagtgtgtgtgtgtgcgccaacCCTTTTTGTCCCCCACTGGCTCCCATCCCATAATACGACCAGACCGCACTGATGAATTATTTGCCCAGTGAGGTGTATCCACGGGAACCATGCATTCCTGACACacatcatagagagagagagacacacacacccttgaaCGAGGGAGGGATAGAAATAAGGAGCATACTGAGTGTGTGAGTGATACTGAGAAGAGGAGTGAGCAGAGTGAACCTGTAACTTagtctaacacacacagacagacggaggGATCTTTACAGCAGCAACGGAAGCAGCAGGAGCGTGGTGTGGGACAGAGAGGGATGTTGTCTGGCTGAGCTGggacctctccctctcctgtctgtctgatggAGAGCAGAGGGACGCAGCACAGTGAGCTGATACTAAGGTGTGTGGGGTCGAGGTGAAAGAGGAGTTCGCTGGGAATCATGTGATTGGACAGCGATGTTTACCTGCATCATGTGACTTCACAGAGAAGATTATACTATAGGGTCTCCATTATGGCTGTTGTGAtgtgtatctctctcttcctcttcctgctcctcctctgcctgtccctcactcctcccctccatctgcaTGCCTTCCCCCTGGCGGCAGAGGCACCAcctcacccacacacagacacacagacagatgtaCAGGTTTCACACAGCCCTTTAGGGGCATCTTGGGCTCTGGTAGGCCTCAACGCTGGAGCCAGAATGGCCGACTCTCTGGGTTGGTTTCCAGGGCTGAGGGGCCCCATACTGGAACCTGAGGAAACTGAGAAACAGGACTACACAGACGAGTTTCAAGGAACTATTGGTGAATACCATGATTTGCTGGAAAGCCCTGAGCAGTCACCTAAGACTGTCCCCAGACAAACAGGGCTGGAGACATTCAGATTCACAGAGGCAGACAGTGTCACTGCATGGATGGAAATCAAACCCCCAACTGGGACCTTATTTAGGAATGGACTACCAGACAGGATCCAGGATGGAGATCCTGAAAACGAGCTGAAAGAGAGCAACACCAGGGAGAAGGCTGGATCCCCACTAACAACTTCACTGGATGGACAGACTCCTCTGGTACATCTGTCACTCCCACAGAATGAAGATAGTATTGGTAGACCAACACCCATCCTTCTCTTTCGCTCTGACTATACAGAGACCCCAGGCTTTAATCCACTCACTAGGCCTACTTTACCAACCCCAGTGACAGCACAGCTAGGCTCCACTACTGACCCGGACCAAGACCAACCCATAGCCTTGGCCACAGACAAAGGGTTGCTATCTCTGGACCAACCAACCACCCCACACAGAGACATGATGGAAGGAGATATCGTGATGGAGACTGGAGACTTCTCAGAATTGGAGGACGACACAGAAAACCTCACAGATTCAGGAACAGACACAGGTGTGTCTCCAGAGAAGGTGTGGCCTAAGGCAGCCACCAATGAGACACCTATCCTCGACTGCAGCCTGGAGACCAAGGCCACACCCTGCAACACAAATCAATCCTGGAGCCCTGTTTACCCTGATGACATCATCTCAAATAAATCCCAGCGCCCCATTCTGtctctaacccctcctctcttcgTGCCTCTGTATTCTGATTGGAACTCAGCTCTGGCCACCTGGGGCTTTGCCTGGGAGGTCCACATCTACGGTCTAGGATCTGTGTTTGCTGCATTAGGTCTGATATCTGTACTCTGCCTGTTAGGCCTGCCCCTGCGCTGCCCCCCTGGAAGCCCCTATTTCACCCTGCTGCATCTGTTCCTCCTGGCCACTGGAGGCACTAGAGCATTCACTCTGCTGTATGATGCTTATAGTCACCAGGACCGCCTGTCTGCTCTGGGCTCTCTCCTACTTTCTGAGCTACCCTTACCCTGCCTcacctcttccttctccctctccttcctcctcatctccctccgcTCTCGCAtgcacctctccctccctttctccctctctctctccctccctctctcagctctACCCCGGCCTTGTCTCTTGTTCTCCCTTTCCCTGTTGCACTTTGGGGCCTCCCTGGGCTCCATAACTCTCTTCCATGTCTTCCCCagcctccctgtcctcctcctactCCCCCAGGGAGTGTtcatcctcctctgtctcctcctcccctgctccttcctcctcttctacTGCTTTGTACGACAAGACACCAAGCATGTCCAACGGCTGAGTGATGGTGAAGGAGAGGTAACAGGTTCCCCGGTGTTGGTGGGGCGGCCGTCCCGCTGCCCATTCGCTGAGGCTGGGGAGTGGAGCAGGGCGGCAGGGGCTGGGGTAGGAGGGTCTCTGTGCCTGTTAAGCTGTGGGGGGCTCCAGCTGTATGGGATGTTACATGCAATGGGGTTTGGAGGGGTGAGTGCTGGGGCAGGGTTTCAGCCCTGGCCTTGGTGGGGCTACCAGCTGGGCTGCAGGCTCTGTGAGGTGGGGGTGTGTCTGTCCTTGTCAATCATCGGCACTCATCCCCTCCTCTTCTGTTGCTCCAACTCCTGCCCCTGGTCTAAACCCAACTGCAACCCCCGTCCGGGGTCCTGGGTGCAGCTGCCCTGTGCCTCACCCTCAGGAGGACCTAGCCACCCCATTCCCCTCTCCCCAGCCCTCCCCCCTCCCTACCCCTGGTCCCTGGGGCAGGAAGAGAAGCTGGTGGTGTGTGATGTCATCAGTAAGCGCCAGTCCGAAGCGTTCCCCCTTTATACACTAATGGACCCCCCCTCAAACGGACTGAACCTGCATCCTAACCTTAACACCCACCTTGGCCAGACCAGAACCTCAAGACACCCCCACCTCCCTGAACCTCCCAGCCCACCATGGATGCCTCAAGCTGGGGTTGCATCCCAGGGCTCTTCCCATGCTAGTCTAGTTCTGGACACTGACTCCACAATGTACCTGCGCCCCCCCTCTCCAATCGACCTGTCCCGGAGCATAGACCAGGCCCTGTACAGCGAAACCCTGTTCCCCCACAGTCTCTTCAGTCATCCCAGGCTACTCCACGCATCCTCCAGCCTCTCCTTGAACTCCCCTGGCTCACACCTCAGCCAGAGTGCCTCACAACCTGGACACAGCTCAGCCGACAGCTCCCTCTACCGGAGCTCTTCCTGTAGAGATGTTGATATGTCTCCTACACGGCCTCCCCAGCCAGGGTGCTTCCTCCCAGGCCACGGTgatcccatctctccccctgaGCGCTGGTGGAGAGGTAGTAACTCCAGCTGCATGTGCCAGGAATCCCTGAGTGGGTCTTCCCAGGGTCTGTTCTCCAGCCTGGGGGCAGGAGGGGCGCATTCGCATCCCCACTCCACGAGAGGGCAGCTCCCCTCCCAGAGCAGTCTGCCCAGGACGCTCCCCAACCTCTCCCACCACAGACGCTACCGCACCCTCAGCTCCTCCTCGCAGGACAGTCAGGGGGAGGGGCGGCTGGCGGGCAGAGAGGACCTGAGTGAAAGCAGGTTGCTGGAACGGGATCTGGCCGTACAAGCGGAGTTTGTCAACGTGTGCCGACAGATCGATGCTCTTAGCGTGTGCAGTGACACTATTGACCTGTAGGTCGATACTACTGGGTTTGAACCATGAGTCATCTATGCGCCACAAGACACTGTTAGTCTGCACAGCTAAACCAATATATTTATCTGTTATGTAAGGACATAAGGATATGATGTAAAATGCACAGAGATTATATATTGACCTCTAGAGAGATCTAAGGACTTAACTGATAAGCTAACATTTGAGTGGTTAACATTGAGCTCAATTAGCTTTTTCACTGCTACATCAGACGTGTTTGGAGGCATTACTATTAATTACAGTTTTCTGGGATTCTACATGTAGAAAATAGACATAAGTTAGACTTAATTAGAACTAAATAAAGAGATACAGCTCTGTTTGATTAGTTATAAGTGTACAGTTATAGAGTTACAATATGTGCTAAATGAAACAACTTTCTGAACCAACCAATGTGGAGTAGATTAGAACACTAATGTCAGTGTAGTGTTGACGATAGCCATAGACATTTGCAAGATCACTTCATGCTTTAGTGGTACTTACTGGGGGAGAGGGAACATAGTGTAACAGATGCTGTCATACCTTACattatatctgttttttttattaaaacatttctTCTTATAAAGCATTTATAACTGGTGCCCTACCACAAGCGTATCTGTTTAAGTCGCAACAGCAATATTAACCAGGAGTTGTGTTAGTGTCCAAGTGCCAAATGTTGCTATGGAACCAACACCAAATCAATCTGAGAGACCTAACAACGTTTTTCAGACTGAAAACCAGCTCTGATATTCACACTGACTTCAAACCTTTTTTCTACAAAGAGTATTTGtgtcatactgtacatacatcattaaaggctgtgtaaaatgttttatttgtaaatACAATGTACATGGAAAACATTTATACTGTATGGCATGTATCATAGACAAGGTATGATAAACAAAACATTAAGTTTA

Function

NR:

description
proline-rich transmembrane protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571949.2 True 4791 mRNA 0.51 3 75623245 75634823

Neighbor

gene id symbol gene type direction distance location
lep LOC106561227 coding upstream 56079 75565479 ~ 75567166 (+)
LOC118942025 NA coding upstream 69356 75553249 ~ 75554613 (+)
LOC110496163 LOC106561209 coding upstream 317954 75278870 ~ 75305291 (+)
LOC110501950 LOC106561208 coding upstream 366406 75142002 ~ 75256839 (+)
LOC110496136 LOC106561223 coding upstream 477644 74991655 ~ 75145608 (+)
gcsha LOC106561216 coding downstream 21356 75656179 ~ 75661643 (+)
gtf3c6 gtf3c6 coding downstream 78234 75713057 ~ 75718243 (+)
LOC110496239 LOC106561219 coding downstream 84980 75719803 ~ 75722571 (+)
LOC110496246 LOC106561218 coding downstream 91238 75726061 ~ 75730218 (+)
otogl LOC106573511 coding downstream 95995 75730818 ~ 75797742 (+)
G184938 NA non-coding upstream 13518 75609516 ~ 75609727 (+)
G184936 NA non-coding upstream 16595 75606170 ~ 75606650 (+)
G184927 LOC106561212 non-coding upstream 27197 75592282 ~ 75596048 (+)
G184914 NA non-coding upstream 47643 75575371 ~ 75575602 (+)
G184959 NA non-coding downstream 23021 75657844 ~ 75659056 (+)
G185186 NA non-coding downstream 138943 75773766 ~ 75781152 (+)
ptprq LOC106561260 non-coding downstream 204954 75798506 ~ 75842546 (+)
LOC110496116 LOC106561204 other upstream 736745 74828267 ~ 74890826 (+)
LOC110496107 LOC106561202 other upstream 909131 74660359 ~ 74732682 (+)
G183361 NA other upstream 1088219 74529649 ~ 74535026 (+)
G182144 NA other upstream 1998727 73622536 ~ 73624518 (+)
LOC110496459 LOC106561246 other downstream 532834 76167573 ~ 76181555 (+)
G185462 chkb other downstream 798994 76433817 ~ 76434615 (+)
G185549 LOC106561235 other downstream 899555 76534378 ~ 76606975 (+)
G185718 NA other downstream 1195590 76830413 ~ 76832500 (+)
LOC110502025 LOC106573403 other downstream 1512830 76863449 ~ 77160850 (+)

Expression


Co-expression Network