gcsha (LOC106561216)


Basic Information

Item Value
gene id gcsha
gene name LOC106561216
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75656179 ~ 75661643 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571992.2
GTCTAATAAACGTGACAGCCACTGCAGTTGTAAAGACGCGACGAAAATGGCTACGTGTGTAATGCTACGTTGCCTGTCTTCCAACTTTACCTCTGCCATGCCCTTTCTCTACAGTTCGGCACAGATAACTCCCTCTCGGCTGGTATCCAGGGCATATGTACTACGGACTCTGTTCACTACCACCCGACTCTCATCAGCTCTTAAATTCACAGACAAACACGAATGGATAcgagtagagggagaggtagggacggTTGGCATCAGCAAATTTGCTCAGGAGGCTCTAGGAGATGTGGTGTACTGTGGACTACCAGAGGTTGGCACACAGCTGGCACAGACTGATGAATTTGGAGCATTGGAGAGTGTGAAGGCAGCCAGTGAactgtactctcctctaaccGGGGAAGTAACAGAGGTCAACACACTCCTGGCAGACAACCCCGGCCTCGTCAACAAGTCCTGCTACAAAGACGGATGGCTGATGAAGATGACCATTGCTAACCCTAAGGAGCTGGATGCTCTGATGGATGAGAAGGCTTATGAGAGATACATCAGATCCATAGAAGACTAGCATCGCCTAGACGCAACCCTCATCACCCCCTCACCTGCCTAGCAATCCCTACTAGAGAGGAAGTGCACCAGTTGTGCCGGGAGTCAGATGTGACACTACACCGGGAAACCACCAGAAACGCCAGAGAAGCAGCAGAGCTCATCCATGTTGACTTGCCAGTGTTATTGTGGTCTGAATGTTAAGTCTTTAGTGTACTGGTAATGACTATGACCTAATGGGGATTTTGGTAGCAAACGTCTTACACATGTGGCATGACGTACTGTACATGGCTGATGTAGAGTGAtactgtacgagtcctgatgcATTCTCTGGCTGAATCTCAAGTCTTATCCTTGATTCCTTGTGTCCTTTCTCCACCTCCTTAAAACAGAGGGTTTCATTATGTTTTGAGGAGTTAAGGACACAAAAGAATTGAGGAAAATACTTTAAGATTAATCCTCAGTCTTCCACTCAAAGCCTTCCCCAAGCACAGGGGATGAGGAACTTATGCTGCATTCATAATTAAGTGAGAAGTTGTTAATTATACCAGTTGGATGTATTCACATGCTTTTAACTCATTGAGAAATGGGatgatagatgagtttcccactGGTAATTATGAGTTGTAGGGGGGTTTAAGTGGTTTTTTCCCAGTTGTGTGTGGTaaataccaccttcccacttggttatgaatgcaGCATCAAGACTGAACACTACTGGGAAAAATAGTGCAATTCTGAGGACTATCAAATACAGCTGTCTGGATCAGTCCATCTGGTAGGGGAGGGGGAAGGGCTACTAATAAAGCACTTTGGATTTGGAGCAGGCTGGtttctactgtatgttgttgtgcgTCTGTATGCACAGCATGTACTGGCACTGAAgattacataaaaataaaacTCTTGACTTGCA
>TU209784
CTGCAGTTGTAAAGACGCGACGAAAATGGCTACGTGTGTAATGCTACGTTGCCTGTCTTCCAACTTTACCTCTGCCATGCCCTTTCTCTACAGTTCGGCACAGATAACTCCCTCTCGGCTGGTATCCAGGGCATATGTACTACGGACTCTGTTCACTACCACCCGACTCTCATCAGCTCTTAAATTCACAGACAAACACGAATGGATAcgagtagagggagaggtagggacggTTGGCATCAGCAAATTTGCTCAGGTGGGTTGTTCTCGAGGCATGCTATCACTAGTTCTTAAAGACATGTTTCGGTACCTGAGTGACAAATAAATTATTTAAAcctgctttgggctggatgtgtcaatgtgtagttcatacatgcaaaattagtcttacctcaattagccatgaAAGTGACTTTTCTTGAATCTGTGCCATGCCATGTTCACTACATACCCTAGCAATTAGAGTTGTAGCCAATGAGCTTCTTCAGCCCCTCGCATTTGAGTGACAACTAACAAAAGGCCTGCCCAGCGATATCCAAGGAGTTTGCAGGGTGGACACAGCAGAGAGGGGGAGCAATGATGTGTTGCACATACGTGACCTAGTATGCAAATTTCGTGGACCTCTTTTGGCTTGTGAGTGCTaatttcagaactactggctaaaaagtatacacaAGTACTGGACAATCTCTTTAAGAGCCCCATTGGGACCTGTGGTCTTCTTACCAACCCACTGTTAGTATATGTTGTGGCGCTTCCAACACATCATGGATCATCAGTGTTGTTGGGACTGACACGTCTCATTTAATTGGTAAAATCTAAATCTGTGTCCTGCAGGAGGCTCTAGGAGATGTGGTGTACTGTGGACTACCAGAGGTTGGCACACAGCTGGCACAGACTGATGAATTTGGAGCATTGGAGAGTGTGAAGGCAGCCAGTGAactgtactctcctctaaccGGGGAAGTAACAGAGGTCAACACACTCCTGGCAGACAACCCCGGCCTCGTCAACAAGTCCTGCTACAAAGACGGATGGCTGATGAAGATGACCATTGCTAACCCTAAGGAGCTGGATGCTCTGATGGATGAGAAGGCTTATGAGAGATACATCAGATCCATAGAAGACTAGCATCGCCTAGACGCAACCCTCATCACCCCCTCACCTGCCTAGCAATCCCTACTAGAGAGGAAGTGCACCAGTTGTGCCGGGAGTCAGATGTGACACTACACCGGGAAACCACCAGAAACGCCAGAGAAGCAGCAGAGCTCATCCATGTTGACTTGCCAGTGTTATTGTGGTCTGAATGTTAAGTCTTTAGTGTACTGGTAATGACTATGACCTAATGGGGATTTTGGTAGCAAACGTCTTACACATGTGGCATGACGTACTGTACATGGCTGATGTAGAGTGAtactgtacgagtcctgatgcATTCTCTGGCTGAATCTCAAGTCTTATCCTTGATTCCTTGTGTCCTTTCTCCACCTCCTTAAAACAGAGGGTTTCATTATGTTTTGAGGAGTTAAGGACACAAAAGAATTGAGGAAAATACTTTAAGATTAATCCTCAGTCTTCCACTCAAAGCCTTCCCCAAGCACAGGGGATGAGGAACTTATGCTGCATTCATAATTAAGTGAGAAGTTGTTAATTATACCAGTTGGATGTATTCACATGCTTTTAACTCATTGAGAAATGGGatgatagatgagtttcccactGGTAATTATGAGTTGTAGGGGGGTTTAAGTGGTTTTTTCCCAGTTGTGTGTGGTaaataccaccttcccacttggttatgaatgcaGCATCAAGACTGAACACTACTGGGAAAAATAGTGCAATTCTGAGGACTATCAAATACAGCTGTCTGGATCAGTCCATCTGGTAGGGGAGGGGGAAGGGCTACTAATAAAGCACTTTGGATTTGGAGCAGGCTGGtttctactgtatgttgttgtgcgTCTGTATGCACAGCATGTACTGGCACTGAAgattacataaaaataaaacTCTTGACTTGC

Function

NR:

description
glycine cleavage system H protein, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571992.2 False 1465 mRNA 0.46 5 75656179 75661643
TU209784 True 2024 lncRNA 0.45 4 75656200 75661642

Neighbor

gene id symbol gene type direction distance location
LOC110496192 LOC106561214 coding upstream 21356 75623245 ~ 75634823 (+)
lep LOC106561227 coding upstream 89013 75565479 ~ 75567166 (+)
LOC118942025 NA coding upstream 102290 75553249 ~ 75554613 (+)
LOC110496163 LOC106561209 coding upstream 350888 75278870 ~ 75305291 (+)
LOC110501950 LOC106561208 coding upstream 399340 75142002 ~ 75256839 (+)
gtf3c6 gtf3c6 coding downstream 51414 75713057 ~ 75718243 (+)
LOC110496239 LOC106561219 coding downstream 58160 75719803 ~ 75722571 (+)
LOC110496246 LOC106561218 coding downstream 64418 75726061 ~ 75730218 (+)
otogl LOC106573511 coding downstream 69175 75730818 ~ 75797742 (+)
LOC118942028 LOC106561225 coding downstream 75171 75736814 ~ 75737495 (+)
G184938 NA non-coding upstream 46452 75609516 ~ 75609727 (+)
G184936 NA non-coding upstream 49529 75606170 ~ 75606650 (+)
G184927 LOC106561212 non-coding upstream 60131 75592282 ~ 75596048 (+)
G184914 NA non-coding upstream 80577 75575371 ~ 75575602 (+)
G185186 NA non-coding downstream 112123 75773766 ~ 75781152 (+)
ptprq LOC106561260 non-coding downstream 178134 75798506 ~ 75842546 (+)
G185204 NA non-coding downstream 180983 75842626 ~ 75843401 (+)
G185205 NA non-coding downstream 182118 75843761 ~ 75845575 (+)
LOC110496136 LOC106561223 other upstream 568772 74991655 ~ 75145608 (+)
LOC110496116 LOC106561204 other upstream 769679 74828267 ~ 74890826 (+)
LOC110496107 LOC106561202 other upstream 942065 74660359 ~ 74732682 (+)
G183361 NA other upstream 1121153 74529649 ~ 74535026 (+)
G182144 NA other upstream 2031661 73622536 ~ 73624518 (+)
LOC110496459 LOC106561246 other downstream 506014 76167573 ~ 76181555 (+)
G185462 chkb other downstream 772174 76433817 ~ 76434615 (+)
G185549 LOC106561235 other downstream 872735 76534378 ~ 76606975 (+)
G185718 NA other downstream 1168770 76830413 ~ 76832500 (+)
LOC110502025 LOC106573403 other downstream 1486010 76863449 ~ 77160850 (+)

Expression


Co-expression Network