gtf3c6 (gtf3c6)


Basic Information

Item Value
gene id gtf3c6
gene name gtf3c6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75713057 ~ 75718243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572014.2
ATAATGTTGAACCTGTGCAATAAATGATAGGAGTACAGACACAAAAAACATTGGCTTTTTTTAAGATTAAAAAAGGCAACCTTAAAAAATATTTCGATTGTTCTTTGCATGATAACTAGTATAACATATCGATATTTTTGCACATTTTCCATAATTTTCGCCGTAATTATTAATTAAACTGGAAAATACTTATATTCTGAAGGAGTCCCAAACTCCGTGACCAGGAAGTACTTAGTTATTATTGCCTGTTTCACAGCGGTGTGGGTCTTTGTTTATTATTCCCGGCAGTTTCTTATCAAGCATCGTGAATATGGAAGACGAATGGGAGGAGGAGgAGCAGTTGGTTGTGGTTGAGCTCTCTGGTATAATTAACTCAGATTTTTTGACCAAGTGTCAGGGAACCTGCAAGATACTGGACATTGACAGTGAGCAGCCAATGATGCAGGTGGGAAGATACGTGTTTGCGGGAGAGTATGACGATGCCTTGGGCACCTGTGTGCTCTTCGAGGAGGGACAGTCGAGTGggGCAGACCCTGAAGCCAGTCCAGAGCTGAGCTATAAGTGCCACACTGTTAAGAGACTGATGATGCAGAGAACCTTTCTTGCTGAGAAAAAGGAAGGAGACAACAGctcagGAGACTTTCAGTTTCAGCCACTGAGTGACGGAATGTCCCCAGCCAGACTCgactcactctctcacttcatCCAGAACCCAAAGAGGATCTCCAAGCCAGCAGGGGAAGGGGGAGCACACATGATGGGGCAGAAAACTGGGTAGAGGGGTCAGGCAGGACACTGTCAGCAACTCCATTAATTAGGTTTTACCTCTGAtttgtaattatatttttgtactGTGTATGTTGTTGAAATAAATATGACGCTTTCTAGA

Function

symbol description
gtf3c6 Predicted to be involved in transcription by RNA polymerase III. Predicted to be part of transcription factor TFIIIC complex. Orthologous to human GTF3C6 (general transcription factor IIIC subunit 6).

NR:

description
general transcription factor 3C polypeptide 6

GO: NA

KEGG:

id description
K15203 GTF3C6; general transcription factor 3C polypeptide 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572014.2 True 889 mRNA 0.43 6 75713057 75718243

Neighbor

gene id symbol gene type direction distance location
gcsha LOC106561216 coding upstream 51414 75656179 ~ 75661643 (+)
LOC110496192 LOC106561214 coding upstream 78234 75623245 ~ 75634823 (+)
lep LOC106561227 coding upstream 145891 75565479 ~ 75567166 (+)
LOC118942025 NA coding upstream 159168 75553249 ~ 75554613 (+)
LOC110496163 LOC106561209 coding upstream 407766 75278870 ~ 75305291 (+)
LOC110496239 LOC106561219 coding downstream 1560 75719803 ~ 75722571 (+)
LOC110496246 LOC106561218 coding downstream 7818 75726061 ~ 75730218 (+)
otogl LOC106573511 coding downstream 12575 75730818 ~ 75797742 (+)
LOC118942028 LOC106561225 coding downstream 18571 75736814 ~ 75737495 (+)
ptprq LOC106561260 coding downstream 80263 75798506 ~ 75842546 (+)
G184959 NA non-coding upstream 54001 75657844 ~ 75659056 (+)
G184938 NA non-coding upstream 103330 75609516 ~ 75609727 (+)
G184936 NA non-coding upstream 106407 75606170 ~ 75606650 (+)
G184927 LOC106561212 non-coding upstream 117009 75592282 ~ 75596048 (+)
G185186 NA non-coding downstream 55523 75773766 ~ 75781152 (+)
G185204 NA non-coding downstream 124383 75842626 ~ 75843401 (+)
G185205 NA non-coding downstream 125518 75843761 ~ 75845575 (+)
LOC110496136 LOC106561223 other upstream 625650 74991655 ~ 75145608 (+)
LOC110496116 LOC106561204 other upstream 826557 74828267 ~ 74890826 (+)
LOC110496107 LOC106561202 other upstream 998943 74660359 ~ 74732682 (+)
G183361 NA other upstream 1178031 74529649 ~ 74535026 (+)
G182144 NA other upstream 2088539 73622536 ~ 73624518 (+)
LOC110496459 LOC106561246 other downstream 449414 76167573 ~ 76181555 (+)
G185462 chkb other downstream 715574 76433817 ~ 76434615 (+)
G185549 LOC106561235 other downstream 816135 76534378 ~ 76606975 (+)
G185718 NA other downstream 1112170 76830413 ~ 76832500 (+)
LOC110502025 LOC106573403 other downstream 1429410 76863449 ~ 77160850 (+)

Expression


Co-expression Network