LOC110496239 (LOC106561219)


Basic Information

Item Value
gene id LOC110496239
gene name LOC106561219
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75719803 ~ 75722571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572025.2
ACCAATCAAAAGGCCGAAGCTGTCCAGAAGTGGAGTAATGGACGAGCGGTATGAAACAAGCTAATCTTAGTACAGGAAACGACTTTACTACGGCGATGGGTGTGTATCCGGAGTAGATGACGTTGACGGTCAAAATCGAAAGACTTCAGAAAGACCGagtatggCGCTGCGGCCGTTGGTCATGTGTTTTGCGCTGTGCGTGGTGCACGCCTCCAGTAAACCCACCATCGACAAGAAGGACCGTGTCATTCATGACGACCTGCTTAGCAACCGCAACCATGACGACGCAGATAACTTTGATTATGACCATGAAGCGTTTCTTGGACAGGATGAGGCCAAGACCTTCGATCAGCTCACACCtgaagagagcaaagagagattgggtatGTTGGTAGAGCGTATAGATGAGGACAAGAATGGGTATGTGTCAGTAGAGGAGATGAAGAAGTGGATCAAACACAGTCAGAAGAGGTGGATCTATGATGATGTGGACCGCCAGTGGAAAGGTCATGACCTTAACGGAGATGGACTGGTGTCCTGGGAGGAGTACAAGAATGCCACATACGGATACATACTGGATGATCCAGACCCAGAAGATGGCTTCAGCTACAGACAGATGATGTCACGTGACGAGAGGAGATTCAAAATGGCCGACTTGGACGCTGACCTGAAGGCCAATAAAGAGGAGTTTACAGCCTTCCTCCATCCTGAGGAGTACGACCATATGAAGGATATAGTTGTACTGGAGACCATGGAGGACATTGATAAAAACGGAGACGGCTTCATAGATCTGGAGGAGTACATAGGTGACATGTATAACCAGGAGGGTGATCCTTCAGAGCCAGAGTGGGTGAAGACAGAACGAGAACAGTTTACTGAGTTCAGAGATAAAAACAAAGATGGCCGCATGgacaaggaggagaccagagacTGGATCCTCCCTTCAGACTATGACCATGCAGAGGCAGAAGCCAAACACCTGGTCTACGAGTCAGATAacgacaaggACGGCCATCTGACCAAGGCAGAGATCGTAGAGAAGTATGACCTCTTCGTTGGCAGCCAGGCTACTGACTTTGGAGAAGCCTTGGCAAGACATGATGAATTCTAACTTTCCACTTCCCAcacagggttgggctcaattcagtCATGGAGTTGAAATCCCAATTAAAAACACTATATGGAGAATAGGGTGACGTTTGAGACGGAGCGTTTCACACTAGTGTACTAAGTAGTATACGAGTTTGGACATCAAGTTTGGACATCAAGACACACCTCCTGGTTTGGCTCCACCACCATCCTCTCGTCCAATCCAGACAATGGAAAGGATATACAGTATTTCCTTTGTCTTCGTTTGCAGATCAActttgtttttgtaagaagtgacAGAATACAGATGTTAGTGTTTGTTTTGGTAGCCTTGTTTGAACAATGTGTCAGGTGTGCAATGAAGGGCAGAACTGTGCATGTTGTGGTCATTTCAGGTTTAAATTCAGGAAGTGAGTCAAATTCAATAGAAAAAGtgaattgatcccaaccctggtgtATGTTCTGCACTGGACTATGAAGGGGAGATGTACAGTGCCCTCTACtaatattggcacccttggtGAATATGAGCAAACGGGCtgtgaaaaaaaaatgtatttgtttatccTCTTGGTCTTTCTTTCAAAATATTCACATAAATCTAACCTTTAATTAAAGTAAAAtaatttgaaaaaaatatatcataaaacaaa

Function

NR:

description
calumenin-B-like

GO:

id name namespace
GO:0042470 melanosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0033018 sarcoplasmic reticulum lumen cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23901 CALU; calumenin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572025.2 True 1742 mRNA 0.45 7 75719803 75722571

Neighbor

gene id symbol gene type direction distance location
gtf3c6 gtf3c6 coding upstream 1560 75713057 ~ 75718243 (+)
gcsha LOC106561216 coding upstream 58160 75656179 ~ 75661643 (+)
LOC110496192 LOC106561214 coding upstream 84980 75623245 ~ 75634823 (+)
lep LOC106561227 coding upstream 152637 75565479 ~ 75567166 (+)
LOC118942025 NA coding upstream 165914 75553249 ~ 75554613 (+)
LOC110496246 LOC106561218 coding downstream 3490 75726061 ~ 75730218 (+)
otogl LOC106573511 coding downstream 8247 75730818 ~ 75797742 (+)
LOC118942028 LOC106561225 coding downstream 14243 75736814 ~ 75737495 (+)
ptprq LOC106561260 coding downstream 75935 75798506 ~ 75842546 (+)
LOC118942030 LOC106561226 coding downstream 106809 75829380 ~ 75831472 (+)
G184959 NA non-coding upstream 60747 75657844 ~ 75659056 (+)
G184938 NA non-coding upstream 110076 75609516 ~ 75609727 (+)
G184936 NA non-coding upstream 113153 75606170 ~ 75606650 (+)
G184927 LOC106561212 non-coding upstream 123755 75592282 ~ 75596048 (+)
G185186 NA non-coding downstream 51195 75773766 ~ 75781152 (+)
G185204 NA non-coding downstream 120055 75842626 ~ 75843401 (+)
G185205 NA non-coding downstream 121190 75843761 ~ 75845575 (+)
LOC110496136 LOC106561223 other upstream 632396 74991655 ~ 75145608 (+)
LOC110496116 LOC106561204 other upstream 833303 74828267 ~ 74890826 (+)
LOC110496107 LOC106561202 other upstream 1005689 74660359 ~ 74732682 (+)
G183361 NA other upstream 1184777 74529649 ~ 74535026 (+)
G182144 NA other upstream 2095285 73622536 ~ 73624518 (+)
LOC110496459 LOC106561246 other downstream 445086 76167573 ~ 76181555 (+)
G185462 chkb other downstream 711246 76433817 ~ 76434615 (+)
G185549 LOC106561235 other downstream 811807 76534378 ~ 76606975 (+)
G185718 NA other downstream 1107842 76830413 ~ 76832500 (+)
LOC110502025 LOC106573403 other downstream 1425082 76863449 ~ 77160850 (+)

Expression


Co-expression Network