LOC110496246 (LOC106561218)


Basic Information

Item Value
gene id LOC110496246
gene name LOC106561218
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75726061 ~ 75730218 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934208.1
ATGTCCAATGTCCCAGCGAAGGTGACCTGTGTGcagatgATGACAAGTAGTCGTAGGGCCACCCCGGCACAGCCCAGCCCCTCACACCTGTTAATCAACCCCAATGCCTCTGCAACCCCAGAACCTGGGCCCGGAGGCCACACCTCCACAAAGTTTATGAGCGAGTTGCACTCCCTCCACAtGCCCTCATGGGCTATAGGAGCTCTATGcgtggtgagtgtgtgtctggtgtTGTCATGCTGTTTGTGTGTCTGGAGGAAATGTCTGAAGAAGAAAGACAAGGacacagagaaggagaagaagggcTTGAACATGGACACTGAGCTGGAGGGAGGCACCTCTGagcCCCTGAAGGATGAGGGTGACACAGAGACCGGATTGACtggcagggaggaggaggagcctaAAGAGGAAGTGAAGTTGGGCAGACTGGAGTTCTCAATGGACTACAACTTCACAGAGAACACGTTGGTAGTAGGTATCCTGCAGGCCTGTGATCTCCCTGCCATGGACGTTGGGGGAAGTTCAGACCCGTATGTTAAACTCTACCTTTTGCCAGACAAGAAGAGGAAGTTTGAGACTAAAGTCCACAGGAAGACACTCAACCCAACCTTCAATGAGACTTTCACCTTCAAGgtaccgTACAGTGAACTGGGAGGCAGGACTCTGGTGATGACAGTGTATGACTTTGACCGTTTCTCTAAACACGACGCTATTGGAGCGCTACGAGTACCAATGAGCAGCCTGGACTTCAGTCAGATGACACAGGAGTGGCGGGAACTGAAgaaggcagagaaagaggagtcagagCGTCTGGGTGATATCTGTCTTTCTCTGAGGTACGTTCCTACAGCAGGGAAACTAAGCATTGTCGTCCTCGAGGCCAAAAACCTAAAGAAGATGGACGTAGGAGGACTATCAGacCCCTATGTAAAGATACACCTTCTGCAGAATGGAAAGagactgaagaagaagaaaaccaGCATCAAGAAGAACACTCTCAACCCTTACTACAATGAGTCCTTCAGCTTCGAGGTGCCTTTCGAACAGATACAGaagGTGCAGGTAGCAGTGACAGTTTTGGACTATGATAAGATTGGGAAGAATGACGCTATCGGGAAGGTTTTTCTAGGCGGAGCCAGCAGCGGCACAGAGCTCCGTCATTGGTCAGACATGCTGGCCAACCCCCGCCGGCCCATTGCTCAATGGCATGGCCTCAAAGCAGAGGATGAAGTCAACGCTGAGCTGGCTgccaggaagtgatgtcacatcCCTAGGCAGCTCTCTGTAGAAGACTACTTTATATTGATGCATACTGACTTTGCCCTTCTACTCCTACCCACTTATAAACTCCCAAACCCTGATACCCATCCACCattca

Function

NR:

description
synaptotagmin-1-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K15290 SYT1; synaptotagmin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934208.1 True 1381 mRNA 0.51 11 75726061 75730218

Neighbor

gene id symbol gene type direction distance location
LOC110496239 LOC106561219 coding upstream 3490 75719803 ~ 75722571 (+)
gtf3c6 gtf3c6 coding upstream 7818 75713057 ~ 75718243 (+)
gcsha LOC106561216 coding upstream 64418 75656179 ~ 75661643 (+)
LOC110496192 LOC106561214 coding upstream 91238 75623245 ~ 75634823 (+)
lep LOC106561227 coding upstream 158895 75565479 ~ 75567166 (+)
otogl LOC106573511 coding downstream 600 75730818 ~ 75797742 (+)
LOC118942028 LOC106561225 coding downstream 6596 75736814 ~ 75737495 (+)
ptprq LOC106561260 coding downstream 68288 75798506 ~ 75842546 (+)
LOC118942030 LOC106561226 coding downstream 99162 75829380 ~ 75831472 (+)
LOC110496295 LOC106561258 coding downstream 163971 75894189 ~ 75902042 (+)
G184959 NA non-coding upstream 67005 75657844 ~ 75659056 (+)
G184938 NA non-coding upstream 116334 75609516 ~ 75609727 (+)
G184936 NA non-coding upstream 119411 75606170 ~ 75606650 (+)
G184927 LOC106561212 non-coding upstream 130013 75592282 ~ 75596048 (+)
G185186 NA non-coding downstream 43548 75773766 ~ 75781152 (+)
G185204 NA non-coding downstream 112408 75842626 ~ 75843401 (+)
G185205 NA non-coding downstream 113543 75843761 ~ 75845575 (+)
LOC110496136 LOC106561223 other upstream 638654 74991655 ~ 75145608 (+)
LOC110496116 LOC106561204 other upstream 839561 74828267 ~ 74890826 (+)
LOC110496107 LOC106561202 other upstream 1011947 74660359 ~ 74732682 (+)
G183361 NA other upstream 1191035 74529649 ~ 74535026 (+)
G182144 NA other upstream 2101543 73622536 ~ 73624518 (+)
LOC110496459 LOC106561246 other downstream 437439 76167573 ~ 76181555 (+)
G185462 chkb other downstream 703599 76433817 ~ 76434615 (+)
G185549 LOC106561235 other downstream 804160 76534378 ~ 76606975 (+)
G185718 NA other downstream 1100195 76830413 ~ 76832500 (+)
LOC110502025 LOC106573403 other downstream 1417435 76863449 ~ 77160850 (+)

Expression


Co-expression Network