otogl (LOC106573511)


Basic Information

Item Value
gene id otogl
gene name LOC106573511
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75730818 ~ 75797742 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934224.1
cccaacacctGCGCGCAAGTGCACTCATCATCCATCTGAGGGGCTCGCTCAACTTCCTCTGTGCGCGTGGATGTCAACCGCGGGAAACTCGGTAACGAAAAGAGATCACTACTCCCCAGTCTGTCCTGTGAAATGTTCCGTTAACCTCCGGGTGGATGAGCTCTGAGATGAACGGTCCGCGGAGAGTCAAACTGTTTCTTCTTTCGTGGTATTCAGTCCTCCAGCTGCTGACAGCACAAGAAGCTCAGAGCCaactgacagagacagacggaAGACTTCAGAGgAGGGCTAATGCACTGCGGAGGAAACGGGATCTCCTAGGGGAGGAGacatTCAGTCCTCTTCTCTCTGAAGCAGCTCTCCCTCGCAGTGTTCTACATAATTACACGGCCCGCGATGCCTCctcagAGTACTGTGACTGTCTGAATGGGGGCTGGTGTCAGGAGGGGGGCGTGTGTGACTGTGCACAGTTCCAGGCCCTCGGAGACCGCTGCCAGATcattcctAACCAGGGCCAGGACAGAGATGGGATATGCAGGTCTTGGGGTCAGTACCACTATGAGACGTTCGATGGCAGCTACTTCTACTACCCTGGAACCTGCTCCTACATACTGGCCCAGGACTGCCGCTCAGCCACACCACAGTACACAGTGTGGGTCCATAACAGCCGTATGTGTGAGGGCAGTGTGTACTCCTGTCCCAGGGCTCTCAGTCTCTTCTTCCCCAACGAGGAGGAGATCCACATCTCTGGATACCAAGTCCACCAGGGGGGtcgcaggctgatccTACCCCAGACTATAGGAGGTGTGTTTATAGAGCGTTTGGCTGACTACCTGCTGGTGAAGAGCGTGTTTGGCTTCTCTCTGGCGTGGGACGGGGGGAGCGGAGTATATCTGAAGATGTCTGAACAGCACCATGGCACCCCCTGTGGCCTCTGTGGGAACTACAACAACCTGCCCAACGATGACCTCACCACAGCCCGCGGTGTGCAGACAGAGGAGCCAGCAGTGTTTGCTAACAGCTGGTCAGTCGATCTGCCCCATGAAAGAGGCTGCCCTCTAGTGGACATAGACTTCACTGGACCCTGCCACTCTGAGTCTGACATGGACAACATCGACCCAAACCCCTACGTGGCCAGCTGTGTCTCCGACCTCTGTGTGTCAGATGAGGAGGAGACGTTTTGCCGTGCGCTGGTGGAGTACACACGAGCCTGCAGCCATGTAGGATACCCTGTACGAGAGTGGAGAGACAGCTTCCCTTCCTGCAGGTTGATTCTGCAGAATGGGACGTGTATCGCTGTGTCTCAGTGTCCTTGTGTCTACCACGGCACctcatacacacagggacacactctGGAGCAGGGCTGCAGcgtctgtgtgtgtatggggggagTGTGGAACTGCACGGACAACAACTGTACAGcggaGTGTTCAGTAGTAGGTGACGTGTTTGTGACATCGTTCGATGGGAGGATGTTCCTGCAGCCAGGAGCGTGTCAGTACGTCTTGGCCAAGAGCCGCAGCGGCAGCAGATTCACTGTTACACTGCAGTATACCACCTGCacaaaggcccaGCAGCAGGTGTGTATCCAGTCAGTGACGGTGGTTCTGGATGAAGATGTTAATCACCAGGTGACTCTGACCCGAGAGGGGGAAGTGCTTATTGGGGTCAACCCCGCCCCCGCTTTGCCCTACACCGGTGatgtagTTGAGGTACGGAGGTTAACGGCAGTGTTCGTCCAGCTGAGGACGTTGCTTGGACTGCGTCTGCAATATGACGGGCGTGGTGGGCGTGTCTATCTACAGCTGGACAGCCAATGGCGCAGCAACACCCTGGGCCTTTGTGGAACCTTCAACGGAAACCTGCGGGATGACTTCCTGTCTCCAGCAGGGATGATAGAGGGGACTCCCCAGCTCCATGCTAACTCCTGGAGAGTCTCATCTGCTTGCTCCGCCCCCGTCAACCAGCCCATCATTGACCCCTGTGAGATAAATCAGCACAACgtgttcTACGCCTCTCTGTGTGAGGTGTTGTTGGGCAGTGTGTTCTCTCCATGCCATGGTTACGTCAGTTCCAGTGTGTACCAGCAGCAGTGTCGCTACCAGGCCTGTCGCTGTGGTAACGCCTGTCTATGTACGGCCCTGGCCCACTATGCCTATCTCTGCTCCAAACACAATGTTACTGTCAACTACAGGGCCCACGTCTCAGAGTgtgggatggTGTGTTTGGGTGGGATGCTGTACCAGTCCTGTGTGTCATCCTGCGGTGGATCATGCCGCTCCCTCTCCAGTGGAGAGACCTGTAACCATGACGACTGTGCTGAGGGGTGTGGCTGCTCTGAGGGCAGTTACTACGACGACGTACGACAACGCTGCGTTCAGCCGTCGCAGTGTCATTGTTACTCTATTGGAGGGGTGTCCCAGCCAGGGGAGGTGTCCTTCAGCACCACAGGCCCTTGCCTGTGCAGGAATGGAAGGATGGAGTGTGTACCAGAAGAAAGAGAGCCGGAGCGAGGCCAGTGTCCAGAGGGAAAGGTGTTCCACAGCTGCTCTGAGCCCCAGAGGTTACACGGGTTCCAGGGGTCGCCGGCCTGGCGAGGAGGTGTGGCCTGTGAGCTCACCTGTCGGAACCTGATGTTGAATCTGACCTGTCCTCCCACCACACCCTGCATACCTGGCTGTGTCTGCCCACAAGGgctGGTGCTGCACCGTGGGGAATGTTACTACccagagaactgtccctgtgccTGGCTGGGCCTGGAGTATCTGCCAGGAGAGACTGTCGACACCCCCTGTTACAGATGtgtgtgTCACCGGGGGTATTTTAACTGTAGTCACAGTCCGTGTCCGGCTGTGTGTACGGTCTACAGTGACAGACACTACCACACCTTCGACGGCCTGGAGTACGACTACCACTCAGAATGTCAGGTCTACCTACTCAAGagtatAGATGGTGAGGTGTCCATCGTGGCCCAGAATAAGGATTGTTATCAGAGTGGGATCATCTGTATGAAGATGCTGGTCATCCATGTTGGATTCACCAAGATCTACTTCAACGACAACTCAGGCCAGCCTAGTCCATCCAGTGTGGTAGGTAAGGGGTCCGAATTTGAGCTGTGGTCAGCAGGCTACTACACAGCAATCCACTTTCCCTACCAGGACCTAACCATTCTCTGGGACCGCAAGACGACCGTACACATCAGAGTTGGACCACATTGGAAGGGTCTCCTGAGTGGTCTGTGTGGGAACTTTGACAGTGTGACAGTGAATGACATGACCACATCCAGCCACATGGAGGTCAGCAATGCTCAGGGCTTCGGAGACAGCTGGGCCCtgggacagtgtgagagtGACTATGTGGTGAAGAGAGCGTGTGAAGGAGACCTGGGTAGACAGCCGTACGCCAAGAGAGagtgtgctctactctacagtgATGTCTTTACTCCCTGTCACAATGTGgtggatGTCTCATGGTTCTATATGAACTGCTTGACAGACACTTGTAACTGTAATCGGGGCGGAGACTGTGAGTGTCTGTGTACGTCCATCGCTGCCTATGCACACACCTGCTGTCAACACGGTGTTACTGTGGTATGGAGAAACCCCACTGTCTGtcCCTATGACTGTGAATACTACAACCAAGaGTTAGGTGAAGGTCCATTCTCAGTGGCCAGTGCTGTGTTTAATGCTACAGTCTTCGGTGTGAACAGAACCAGTGGGTCAGTCTTTCCTCTAGTTAGGGAGTTCGTAGGTGGGCTGCCTCCCCCTGGACTACTCTTTAACTTCATGATCACAGCAGGACTACAGAAGGACCGCACATCacGTCTCCCGGTGATCTCTCTGGAGTCAGCGGAGCGTCCTAACTACTTCCTGGTTGTTTCGGACCGCGCTGGGCTGCGGTTGGAGCAGTGGACAAGAGGGGAGAAGTTTGGCCGCAGGGCTTCCTTCCTACAGCACCAGGGGCTGTTCCTGCCTGGCCACACCTCCTTTGAGCTGATTGGTCAGCCGGGAGTGTTCCTGACTCTGACACGCACGTCTGCACGCGCTCAGAGATACGACAACTCAGACAACTTCAAGACCAGCAGCTCCTTTACCCTGGAGGAGAGCAGTGTTGTGATCCCGTTCCGTATGATGTGTGAGTGGCGCTACCATGCATGTGCCAGTCCTTGTGTTCGTACATGCAGCGACCTCGCCGCAACACGCTGCCACTTCCTGCCCCCGGTGGAGGGCTGTTTCCCTCGCTGCCCCAAAAACATGGTTCTTGATGAGGTCACCAGGAGATGTGTCTACACAGAGGACTctactactactatcactacagCCCCCAATATTACCACTACAGcccccactactaccactacagcccccactactactacaactgttaggcctactagtactgctactactacatctaGAACCACTACTAGGACCACTACTACTAGTAGCAGAACTACAACCAGCACAACTGTTACTGCCACCAGAGCCCCCACTACTCCCAGTACAGCCCCATTGACTGAGCGTTTCACCCACACACTCACCCCTgctcgctccccctctcctcctctcccttccctgccCTCACCCTCCACCCCCACTGTGACCGAGCACACCACTTCACCTGCagtctttccctctgtctccccctcttcctcaccCACCACTACTAGTAGCACCACTGGGGTCACGGCCCTGACCCCTTCAGAGGTCACTACAGTAGCCTCCCCTACTCCCCCCAGCCTGGCAGTGACcgactccaccactccacctcctcccccttctgCTACCCCTCCCCAGCCTTCCACCCAGTCTTCTATCTCTCCCCCAGCCACTAcctccttcctcacctcctctccccctcctcctctctccccctccacccacacccacaccccaaccaccacacaaacacatcatCCTGTTCCTACGCCCACAGAGACCATCTCTGTATTTCCAGTTGTATATGACACCTCCTCTGTTACCATGTCGACATCACCCCCAGAGACGACGGAGTTCATAACCACGGAaacatccaccatcacagacTTCTCTCCTACACCTGaggcagtcagcatgccaacagTGCTGCCCCCCTTCCTCCTGCCCACCGCCCCATGCACACCCCCGTACTCCTACCGTGTAGATGAGTGTACAGAGCTGATCTGTTTTAACGGGGAGCTGCTCCTCCATAACTCCTCCCTCCACTGTCGGTACAACACCACTCCTCCTCGCTGCTCTCTGCTGGGCATGGCTGTCCTCACCAACACCGACCCCTGCTGCCCACTCTGGCAGTGCCCCTgtcgCTGCTCGGTGATGTCAGACCTGCGTGTGATAACGTTTGACGGTAACAACGTGGCGCTGTATGATAATGGCTCCTACATCCTGGTCTACCTGCCCAGAGAGAACATCATAGGAACAGTGGATAAATGCCCTACCAGCCAGAGCGTCAACTCCATCAGACGACCGagcCCTAATGGTGGGACGTCAGGTTTGTGTTTTAAGAAGTTGAACATCACCACTCCGTCCTACAGGATTATCATCAACCGCCTAGACCGCAAGGTGTCAGTGAACCACATCAAGGCGCGGCTGCCTTTCTCCCGCCAGGCTCTATCAGTAGAGGACACAGGCAGCATGTACCTGATCACCACTCCTGAAGGAGTCAACATACAGTGGTACCACAGCACTGGCATCATGGTGCTGCAATACACCGCCCCCTCCAACACATCTGCTCCTACTAGAGGCCTCTGTGGGTGTTGTGACGGGAACCCGGCGGATGACCTGAAGCTGCCCAACGGTACGGTTGTGAGGGAGGTGGCAGACCTGGGTCTGTTCCTGCAGGCCTGGAGGGTCCACACCTCAGAGGACACGGAACACACACGACGCATCGGAGACAACTGTACCACTGGAGACtgctctacctgtctctccatgCTCAGACAGAGACCCTTCACTCCTTGCCACAGCAAGGTGTCTCCAGAACAGTTCTGTGATGTGATGTGGGCAGGCGACCTCCACTATAAGGCCCACCAGTGTGACTTCCTGGCAGCCTACGTAGCTGTCTGCTACACTTACCAAGTCTGCATCAACTGGAGACGACACAACTTCTGCCcATTGAGGTGTCCCCCAGGTAGGGAGTACCAGGCGTGTGTGTCGACCTGTACCACCCGGACCTGTCAGAACAGAGAGTTCTATGAGGAGACCACCTGCTCCCACATccgagaggagtgtgtgtgtcgctctggaACCATCCTGCACCGTGCAGACTCCTCTTACTGCGTCACAGAGGAGCAGTGTGtgtgtactgatAACGAGGGGTCTCCGCGGGCCCCTGGGGAGGTGTGGAACGGGTCATTGCATAGCTGCTGTCTGTTCCGCTGCCTGGAGAACGGTTCTGTGGTAGCAGTAGAACCTGACTGTAGCATTAGTCCCACTCTgctgtgtgagagggagggagagtacgTACTGGATGTACTGGAGGAGGGGGCTTGCTGCCCCAAGCAGATTtgtgAATGTAATCTGACCATCTGTGAGAGTGAGGCTCCGCCCTGTGAGAATGGGAACCAGCTGGTGATTGGTTATAGTGCCCTGTCCTGCTGCCCAGAGTACCGTTGTGAGTGCGACCCCCATGCCTGTCTCCCCCTCACCGCCCCTGATTGTAGAGAAGATCAGTTCCTAGTGGAGGTTCGTGAGGACAACTCCTGCTGTTACACCTTCCTGTGTGtgtgtgagtCGTGTATCGAGCCCGCGCCGTCCTGTTCTTATGGAGAGATACTGGCTGTGGATCTGAACACCACCCACAGCTGCTGCCCTCAATACCACTGTGTGTGTGACGTGAACCTGTGTCCTGAGTCGACTCTGAGCTGTTCTCCTGGTCTGTCTCTGATCCAAACAACCCTACCTGGACACTGCTGCCCCGACCGTCactgtgAGTGCCAGTGTGAGGACAGCCCAGTCTGTCAGGTGGGGGAGGTACAGGTGGAGGTCGCAGACAGCAGAAGCACCTGTGGCTGCCCCCTCTACACCTGCAAGaaggcagaggtgtgtgtgttccagggagTCACGGTGCTGGGTCCGGGGCAGAGCCTGATTCAGTACTATGAAGGAGAGCTGTGTTACACCGTACACTGTCTGACACATCGTGATACACACACTGGATACTACGCCATGGACGTGTCCGCTGTCAACTGCTCTCAGAAGTGTGGCCAgcACCAGCTGTACGTAGCATCTTCAGATCCTCAGGTGTGCTGTGGCTCCTGTAAGAATGTCTCCTGTTCTTTCAACAATGACAACGGAACCACTGAGCTCTTCACTgcagGGAGCTCCTGGGTGGATAACTGTACGCGGTATGATTGTGTGGAGACGACAGTGGGAACTGTGATGCTGGCCTCAGGGGTGGTCTGCCCCCCCTTCAACGACACAGAGTGCACTCAGAATGGGGGCGTGGTCCAGAGCTATGTGGACGGCTGCTGCAGGACGTgTAAGGAGGACGGCAAGACTTGTAAGCGTGTGGCAATCCGAACCACCATCAGAAAAGACGACTGCAGGAGCAACGCaccggtgacaGTGTTTTCATGTGATGGGAAGTGTCCGTCTGCCACCATCTTTAACTTCAACATCAACAGCCACGCCCGCTTCTGCAAGTGCTGCAGGGAGAGTGGACTACAAACCCGCTCCGTCACCCTGTACTGCTCACACAACGCTACCCTGGTGGTCTACAGCTTCCAGGAGCCTGTCGACTGCTCCTGCCAATGGAACTAAAGAGAGAGCGAAGCTAGTCAGTGTGAGCTCCAGTATGGCGTTCAATAGGAGGGATGGAAGATGgaacagaggttagaggtcagaggtcagagtagACAGGTCAAGCGTCCAGGTAGGCGAGTTCTTTAGTCTTCCTTCAGTGTGTTGTGGAGGGCTGTATGCTGACCTGTTATAGTGACCCTGTCGTTACAGATATGTAGTGGTCAGATGTGCAGGGCTGTAACCTGTTCCTGCTGTACTATGATAACACTAGTCCTATCTGTACTGCTGTAGCCTGCTCCTCCTCGTGTGTAACACTAGCTAGTCCTCTCAGACTTTATCACGTTTAGATCAGTTGGTCTGAGCTGACAAGACCACTGCTGCTTTAGTATGGATCTAGTGCTCTCTTGATGACTGACATGTTTTATATGCCAATCAAATTTATCTTacaaaatagttattttttttacaagTGTAAAGCTTTTAtccaaaaatatttgtatttaactCAATCAATTATTTAGTAAGGTGATAATCCACCTGAGCATCTGATGGTAGATGATCTGTATTTCAAGAGAACGCtgtatttgttgtgttgtttaaTGTGAAGCATTGTGCCAGTAATCAGTATGTGCTGATGCCATCAGATAGACTAGAGTCTCTAGTCATGCAGAACCTCTCagaataaaacaataaaacatttaacaATGA
>TU210070
TGTAGTGGTCAGATGTGCAGGGCTGTAACCTGTTCCTGCTGTACTATGATAACACTAGTCCTATCTGTACTGCTGTAGCCTGCTCCTCCTCGTGTGTAACACTAGCTAGTCCTCTCAGACTTTATCACGTTTAGATCAGTTGGTCTGAGCTGACAAGACCACTGCTGCTTTAGTATGGATCTAGTGCTCTCTTGATGACTGACATGTTTTATATGCCAATCAAATTTATCTTacaaaatagttattttttttacaagTGTAAAGCTTTTAtccaaaaatatttgtatttaactCAATCAATTATTTAGTAAGGTGATAATCCACCTGAGCATCT

Function

NR:

description
PREDICTED: otogelin-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934224.1 False 8447 mRNA 0.55 54 75730818 75797742
TU210070 True 334 lncRNA 0.38 1 75797248 75797581

Neighbor

gene id symbol gene type direction distance location
LOC110496246 LOC106561218 coding upstream 600 75726061 ~ 75730218 (+)
LOC110496239 LOC106561219 coding upstream 8247 75719803 ~ 75722571 (+)
gtf3c6 gtf3c6 coding upstream 12575 75713057 ~ 75718243 (+)
gcsha LOC106561216 coding upstream 69175 75656179 ~ 75661643 (+)
LOC110496192 LOC106561214 coding upstream 95995 75623245 ~ 75634823 (+)
ptprq LOC106561260 coding downstream 764 75798506 ~ 75842546 (+)
LOC118942030 LOC106561226 coding downstream 31638 75829380 ~ 75831472 (+)
LOC110496295 LOC106561258 coding downstream 96447 75894189 ~ 75902042 (+)
LOC110496313 fkbp4 coding downstream 117895 75915637 ~ 75935997 (+)
LOC110496319 b4galnt3 coding downstream 142027 75939769 ~ 75982606 (+)
G184959 NA non-coding upstream 71762 75657844 ~ 75659056 (+)
G184938 NA non-coding upstream 121091 75609516 ~ 75609727 (+)
G184936 NA non-coding upstream 124168 75606170 ~ 75606650 (+)
G184927 LOC106561212 non-coding upstream 134770 75592282 ~ 75596048 (+)
G185204 NA non-coding downstream 44884 75842626 ~ 75843401 (+)
G185205 NA non-coding downstream 46019 75843761 ~ 75845575 (+)
G185211 NA non-coding downstream 58387 75856129 ~ 75856857 (+)
G185228 NA non-coding downstream 186308 75984050 ~ 75984401 (+)
LOC110496136 LOC106561223 other upstream 643411 74991655 ~ 75145608 (+)
LOC110496116 LOC106561204 other upstream 844318 74828267 ~ 74890826 (+)
LOC110496107 LOC106561202 other upstream 1016704 74660359 ~ 74732682 (+)
G183361 NA other upstream 1195792 74529649 ~ 74535026 (+)
G182144 NA other upstream 2106300 73622536 ~ 73624518 (+)
LOC110496459 LOC106561246 other downstream 369915 76167573 ~ 76181555 (+)
G185462 chkb other downstream 636075 76433817 ~ 76434615 (+)
G185549 LOC106561235 other downstream 736636 76534378 ~ 76606975 (+)
G185718 NA other downstream 1032671 76830413 ~ 76832500 (+)
LOC110502025 LOC106573403 other downstream 1349911 76863449 ~ 77160850 (+)
LOC118942028 LOC106561225 coding upstream 59753 75736814 ~ 75737495 (+)
G185186 NA non-coding upstream 16096 75773766 ~ 75781152 (+)

Expression


Co-expression Network