LOC118942028 (LOC106561225)


Basic Information

Item Value
gene id LOC118942028
gene name LOC106561225
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75736814 ~ 75737495 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037899.1
GGGTTGATTCTGCAGAATGGGACGTGTATCGCTGTGTCTCAGTGTCCTTGTGTCTACCACGGCACctcatacacacagggacacactctGGAGCAGGGCTGCAGcgtctgtgtgtgtatggggggagTGTGGAACTGCACGGACAACAACTGTACAGcggaGTGTTCAGTAGTAGGTGACGTGTTTGTGACATCGTTCGATGGGAGGATGTTCCTGCAGCCAGGAGCGTGTCAGTACGTCTTGGCCAAGAGCCGCAGCGGCAGCAGATTCACTGTTACACTGCAGTATACCACCTGCacaaaggtaacacacacacacacacactgcagtataCCACCTGCacaaaggta

Function

NR:

description
PREDICTED: otogelin-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037899.1 True 350 mRNA 0.54 3 75736814 75737495

Neighbor

gene id symbol gene type direction distance location
LOC110496246 LOC106561218 coding upstream 6596 75726061 ~ 75730218 (+)
LOC110496239 LOC106561219 coding upstream 14243 75719803 ~ 75722571 (+)
gtf3c6 gtf3c6 coding upstream 18571 75713057 ~ 75718243 (+)
gcsha LOC106561216 coding upstream 75171 75656179 ~ 75661643 (+)
LOC110496192 LOC106561214 coding upstream 101991 75623245 ~ 75634823 (+)
ptprq LOC106561260 coding downstream 61011 75798506 ~ 75842546 (+)
LOC118942030 LOC106561226 coding downstream 91885 75829380 ~ 75831472 (+)
LOC110496295 LOC106561258 coding downstream 156694 75894189 ~ 75902042 (+)
LOC110496313 fkbp4 coding downstream 178142 75915637 ~ 75935997 (+)
LOC110496319 b4galnt3 coding downstream 202274 75939769 ~ 75982606 (+)
G184959 NA non-coding upstream 77758 75657844 ~ 75659056 (+)
G184938 NA non-coding upstream 127087 75609516 ~ 75609727 (+)
G184936 NA non-coding upstream 130164 75606170 ~ 75606650 (+)
G184927 LOC106561212 non-coding upstream 140766 75592282 ~ 75596048 (+)
G185186 NA non-coding downstream 36271 75773766 ~ 75781152 (+)
otogl LOC106573511 non-coding downstream 59753 75730818 ~ 75797742 (+)
G185204 NA non-coding downstream 105131 75842626 ~ 75843401 (+)
G185205 NA non-coding downstream 106266 75843761 ~ 75845575 (+)
LOC110496136 LOC106561223 other upstream 649407 74991655 ~ 75145608 (+)
LOC110496116 LOC106561204 other upstream 850314 74828267 ~ 74890826 (+)
LOC110496107 LOC106561202 other upstream 1022700 74660359 ~ 74732682 (+)
G183361 NA other upstream 1201788 74529649 ~ 74535026 (+)
G182144 NA other upstream 2112296 73622536 ~ 73624518 (+)
LOC110496459 LOC106561246 other downstream 430162 76167573 ~ 76181555 (+)
G185462 chkb other downstream 696322 76433817 ~ 76434615 (+)
G185549 LOC106561235 other downstream 796883 76534378 ~ 76606975 (+)
G185718 NA other downstream 1092918 76830413 ~ 76832500 (+)
LOC110502025 LOC106573403 other downstream 1410158 76863449 ~ 77160850 (+)

Expression


Co-expression Network