LOC118942030 (LOC106561226)


Basic Information

Item Value
gene id LOC118942030
gene name LOC106561226
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75829380 ~ 75831472 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955641.1
TTTTGAAAATCTTGtagtccaaactgagcaatgcTCCAGGCCTTCAGTTCATCTTTATTGAACACAAACTCTTGCAATTCTCTTCCACAGTGCCGTTTGATCCTCCCCAGAATGTGTCGTTAGTGAACCTGACCTCTTCCTCGGTGACCATGCTCTGGCAACCTCCCACTCAGCCAAATGGAATACTCCTGCACTACACTCTGTACTACTCAGACAATACCACTGTCACAGAACAGCATATCCCAGTGTCAGAGCTGGACCCTGTCTCCCCGGGGGAGGACCTGTCCTACCGTTTGTCTGGCCTGAGAGGAGGACAGAACTACAGCCTCTGGCTGACCTCCAGCACCCTGCAGGGGGATGGGGGGGTCCATACTGATCCCTTAAACCTACTCACCCCAGAGGATGCCACCGGACCTCCAGCCCACCCTGCCTGTCCTGCCCTGCCAAGCCCAGCAGGGCTCACTGCCCTGGGCTCAGACACCCACACAccgccctctctcctccacccatccatccacatTACCAGCCTCTCAATCTGCCTTCATCTCCACTTCTCTtattctctccatccctgtttccCGAGGTGTGCACATGCTCAGTTTGCTCTCTCAATATGGTCAGACTCAGTGACCGGAGCTTAGAGGATAGACACCAGAAGAGGGTGTAGCCAGGATGAGTATCTGCTGTTCAAAGTGTCTTTCTTCAAACTTCCTCGACTTGAAGTTTTTCAAAACAAAGTTTCTCGATATAACTTTTCTAAAAAACAAAGTTTCTctggtcaaatgtttgttttcttttcACACTGAGGTTCTCCCTGTTGATCATGGGGTGATGatcctgatgatgatgatgatgatgaagtgctgttttgtgtgtgtctctctgtccctggggtGGCTCAAGTGTTTGATTTCTTAATAATATTGTTGATTTGGGTGGAGATGTATTGCATGTATATACAGCATCCATCAACATACTGTAACTTGAAGTGTTTTAGCAATGACACCCTGTTTGCTATGTAATGCATCTTGACCCATCATTTCAGACGCAGTCCTAGTATTCAGTGATATAAATGATGCATAGTAGTTCAGTCAGTCATACTAACTCCTCGTCTCCCCCACAGTGCCCAGTGATCCGGTCCACAACCTCAGTGCTCAGATCTTCAGTTCTACGGCCATCATAGTAA

Function

NR:

description
phosphatidylinositol phosphatase PTPRQ-like

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955641.1 True 1186 mRNA 0.48 3 75829380 75831472

Neighbor

gene id symbol gene type direction distance location
otogl LOC106573511 coding upstream 31638 75730818 ~ 75797742 (+)
LOC118942028 LOC106561225 coding upstream 91885 75736814 ~ 75737495 (+)
LOC110496246 LOC106561218 coding upstream 99162 75726061 ~ 75730218 (+)
LOC110496239 LOC106561219 coding upstream 106809 75719803 ~ 75722571 (+)
gtf3c6 gtf3c6 coding upstream 111137 75713057 ~ 75718243 (+)
LOC110496295 LOC106561258 coding downstream 62717 75894189 ~ 75902042 (+)
LOC110496313 fkbp4 coding downstream 84165 75915637 ~ 75935997 (+)
LOC110496319 b4galnt3 coding downstream 108297 75939769 ~ 75982606 (+)
c2cd5 LOC106561251 coding downstream 162410 75993882 ~ 76053143 (+)
lmf2a lmf2 coding downstream 222510 76053982 ~ 76066679 (+)
G185186 NA non-coding upstream 48228 75773766 ~ 75781152 (+)
gcsha LOC106561216 non-coding upstream 167738 75656179 ~ 75661643 (+)
G184959 NA non-coding upstream 170324 75657844 ~ 75659056 (+)
G184938 NA non-coding upstream 219653 75609516 ~ 75609727 (+)
ptprq LOC106561260 non-coding downstream 8305 75798506 ~ 75842546 (+)
G185204 NA non-coding downstream 11154 75842626 ~ 75843401 (+)
G185205 NA non-coding downstream 12289 75843761 ~ 75845575 (+)
G185211 NA non-coding downstream 24657 75856129 ~ 75856857 (+)
G185228 NA non-coding downstream 152578 75984050 ~ 75984401 (+)
LOC110496136 LOC106561223 other upstream 741973 74991655 ~ 75145608 (+)
LOC110496116 LOC106561204 other upstream 942880 74828267 ~ 74890826 (+)
LOC110496107 LOC106561202 other upstream 1115266 74660359 ~ 74732682 (+)
G183361 NA other upstream 1294354 74529649 ~ 74535026 (+)
G182144 NA other upstream 2204862 73622536 ~ 73624518 (+)
LOC110496459 LOC106561246 other downstream 336185 76167573 ~ 76181555 (+)
G185462 chkb other downstream 602345 76433817 ~ 76434615 (+)
G185549 LOC106561235 other downstream 702906 76534378 ~ 76606975 (+)
G185718 NA other downstream 998941 76830413 ~ 76832500 (+)
LOC110502025 LOC106573403 other downstream 1316181 76863449 ~ 77160850 (+)

Expression


Co-expression Network