LOC110496262 (LOC106561255)


Basic Information

Item Value
gene id LOC110496262
gene name LOC106561255
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 75846541 ~ 75885181 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955648.1
TGTATCAGTGTCtgcgagggagagaggagagagaatctcTTATCACGGGAAGACAGGAATATTTACATCAGATCATTATctatttttctgtctctctctctctctctctctctttccattttgAAACGGAGTAGCCTATTTATCTGTCTCTTCGCTACCGATCATCTCAGAAACAGAACAGAGGATTAAAAACAGAAGAGAAGAGTAAAACAAAAGGAGAGACTAATGGAAGAATAAAAAGcaaaggagaagagatgaggaagaCCTCTCATCTCATTCATCTATTCTAGCAGGAAGAAGGAATTTAGGctacctctcctctacacttgatcatctctctctctttctctttctccttttctttctcttatctctttctctctctatggtcATGGCTGTGCAGGGGACCAGCCTGCTAGAGAACCCAGTTCAGGCGGTTCTGTACCTTAGAGAACTGACCACTATTGTTCAGAACCAACAGAGCCTCATCCAAACACAACGCCTGCGCATTGACGAACTGGACCTACGCGTGGATGAGCTGCTTGGGGAGAACAGGAATCTGCGTGAAGCAAGAGGTGTACAACCTCACCATCATCACCCAGACCACAACCCGAGCCTTCATTGTCATCATCCTCAGCATCAACATCCGTACCCACAAGACACCGGTTCTCTGCCCGCCCAGCCCATGCCTGAGGTTCATCCTGCTGAGACAGAAAAGTCCTCTCCTCAGCCCGCCAATCCGGAGGACATGCAGCTGGTACCGGCCCATTCCCAGCCACAGTCACTGAGCCCTTTGCAAGGCGAGGCCATCCTGGGCGAGGGGGAGGACAGCAGGGCCAGCATGGGCTGCCACACACTGGTTCCCCTGGTTCCCCTAGCTCCCCTCACTCCTACCACTTTCTGTCGCTCGCTGGCTCTCGCCAGGCAATCAGAGAGTCAGACAATACTACATCAGTTCTGTTGTCCTGCTCCAGAGGCTCCAGAGGCTGCTCTCACTGGCTCCTCCAGTGATGGGCAGCTGCTAGGTCTGGAGGGCGGGACTTCCTCCAgcagacaggaaggagaggggtCAGTAGGTGTGGCTCGTAGAGAAGGACCCAGCGACTATGAACTTGCCCTGGAGAACAAGaccaaacagatAGAGGAGTTGGAGCTGAGGTACGGTGGTCACCTGGTGTCGCGGCGCGCTGCGTGTCGTATTCAGACAGCGTTCCGTCAGTACCAGCTCAGTAAGAATTTCCAAAAGATCCGGAACTCTTTGTCAGAGAGCAAGTTGCCACGCCGCATTTCCCTGCGCCGGCCCAACCCCAGCCGGGGCCAGAACCCCACCCAGCGACACAGCTTCCTGTTAGAGAGTGGGGGCCCACCATTGCGCCCCAAaacacccccaccacccccctcACGTTCCACCTCCCTGCCGCCCTCAGCCTCCCCTGCCACGGGCCCTGGCCCCTCACTCACACAGCTGGAGGACTGCTTCTCAGAGCAGGTACGCTCGCTGGCCCATTCGATAGACGAGGCCCTGCGTGGGTGGAGCCTGTCGGAGGGGGTTGAGGGGGGGACAGGGGGGCTGTTGATGGACCCCGAGGTGTTTCGGGCGGCTGGTCAGAGTGCCTGCATGCCTCGCAGTGCCAGCTCCCTGCTCATGGCCTTCAGAGATGTCACCGTTCACATCGACACCAACAACTACACTGTCTCCACAActaccacctccacaaccaccactaccCACGGCAACACAGGGGCGGGAGGAAGCAGGCAAGCCTcaatggaagggggggggggagaggggggtggaggggtagggagagaaacAACAACCTCCCAGCTGGGGGGTGAGAAAGAGTTCCCTGCCCCCCCTCCCAGTGAGAAATTGTTGAAGGGAGGAGGGTTGAGGATGGAGTCAACTATgacagggcaggggagagagtTGGGGGGGCAGAGTGGCTCAGAGATACTCagttccacctctacctccacctcggCCCAGTCTAACCAGTATATCACTCAGTCCTCCTATCCCCAGTACCACCAGTATTCTACATACCCCCAGGCCCATCACCCCCAATCCCAGCCAGGGTCCCAGTCAGTCAGGGACCCCACCACTGAGGCCCTCCAGGCCCTGGTCCTCTCTCTGCCCAGAGACCGATGCCAGGACCCTGCCTCCTGCCGATCCCCCACACTCTCCACTGACACACACCGCAAACGACTCTACCGCATCGGACTCAACCTCTTCAACGTGAACCCAGAGAGAGGCATCCACTTCCTGATCACGCGTGGTTTCGTCCCAGACACGCCCATGGGCGTGGCCCACTTCCTGTTACAGAGGAAGGGCCTAAGCCGACAGATGATTGGAGAGTTCCTGGGGAACAGCAAGCTGCTCTTCAACAGAGATGTCCTGGACTGTGTGGTCGATGAGATGGACTTCTCTGGGATGGAGCTGGACGAGGCTCTGAGGAAGTTTCAGGCTCACATTAGAGTCCAGGGAGAGGCCCAGAAGGTGGAGAGACTCATTGAAGCTTTCAGtcagagGTATTGCATGTGTAATCCTGAGGTGGTGCAGCAGTTCCATAACCCAGACACCATCTTCATCCTGGCCTTTGCTGTGGTCCTCCTCAACACTGACATGTACTCCCCTAACATCAAACCTCAACGCAAGATGGGCCTCAACGATTTCATACGCAACCTACGAGGAGTGGACGACGGAGCAGACATCCCCAGGGAGATGGTGACAGGGATCTATGAGAGGACCCAGCAGAGAGAGCTACGCTCCAACGAAGACCACGTCACCTACGTCAGCCGTGTGGAACAGTCCATACTGGGCATGAAGACGATTCTGTCTGTGCCCCACCGTAGGCTGGTGTGCTGCTGTCGTCTGTTTGAGGTGGCAGACTTCAACAAACCCCTGAAACAGAAACTGGCCAACACCCAGAGAGAGGTGTTCCTGTTCAACGACCTCATACTTATCCTGAAGCTGTGTCCCAAGAAGAAGACTTCTGCCTCCTACACCTTCTGTAAAGCCATGGGTCTACTGGGCATGCAATTCCACCTCTTCAGTAACGAATactATGCTCATGGCATCACCATGTTGAGTCCGTTCTCGTCAGAGAAGAAGCAGATGGTGAGTTTCTGCTCCCCCAGTGGAGAGGAGCTCAGGAAGTTCACAGAGGAGCTACGAGAGTCCATCACTGAGGTCAACGAGATGGAGCAGATACACATTCaatGGGAGctgaagagagaacagggggtgCAGACTCACACCCCCCACACCAACGGAGGACAGATGGGCACACACTCAGCACACACAGGATCCCCcacagCCCAGAAAGATCTGTATGACAAGACTAGCAACAACACTGTGGAGGTGTCAATTCACAATAGGCTGCTGCAGACCTACCACATGACCCAGGCCAGCCCTGATAGGCTGCTTCAGACCTACCATGTGACCAGTCCTGACTCCACCCAACTGGCTCTGGCAGCACCCCTGGCAATGCTTAGCCCCACCCACCCTGGAGAACTCCGCCCAGACACCCTCATTCAATGCCAGCAGATCGTCAAGGTGATTGTTGTGGACCAGAGCGGCCAGGGGCGAATGGAAGCCTTCCTCAGTCAAGGAAGCCCCACCTCCCACCACCGCCTCATCCAATCAGCGATGTCCACACCAGTACGGATCAGAGAGGGATCTGAgccccctctgcctccccctcctcccccctacaACCACCCCCACCAGTACTGTCCCCCCGACTCCCCCTACCCCCTTCCACACACCCTTCCTCACCCCCTGCGCAGACGCAACTCTAGTGGTTCCCGCAGCCTCGTCTGACATATGTCCCCGGATCCTACCACACCTAATCCTCTGTCCTCTGAACTTTTGTTAAACAGTGATATactgggagaaacacacacaacacaaacactcatagacaaagatagagagggaaagggtGAGacgaggaagggaggaagagaaagagggaggtaaggaagtcagctgagagagagggaataagcCGAGAAATAGAGTGGGAGAAAATGGAGAGGTTTCAAATCAATATAAATTCAAAGTCATCTAACGATGTAATGTGTATTTTGGATTATGATGTCGTTTTGACAACATTTCTAAAGATAGATTTTCTAATCTGACAGCTCTTGTGACACAGTGTCATCTGTACATATCTATATCTGTACCTGGCTTTAGAAAGAACACTCTAGGATGCCCCTCTGACCCCCTAATCATAACCCTGCCCTGATATCACACAGCTGATGCAACAAAAGGAATTCCTCCCAGTGAATGGAACTGTCTGGACATAGatacatgcagttgaagtcggaagttaacatacaccttagccaaatacatttaaacacagttattcacaattcctgacattaatcctagtacaaattccctgtcttaggtcagttag
>XM_036955650.1
TGTATCAGTGTCtgcgagggagagaggagagagaatctcTTATCACGGGAAGACAGGAATATTTACATCAGATCATTATctatttttctgtctctctctctctctctctctctttccattttgAAACGGAGTAGCCTATTTATCTGTCTCTTCGCTACCGATCATCTCAGAAACAGAACAGAGGATTAAAAACAGAAGAGAAGAGTAAAACAAAAGGAGAGACTAATGGAAGAATAAAAAGcaaaggagaagagatgaggaagaCCTCTCATCTCATTCATCTATTCTAGCAGGAAGAAGGAATTTAGGctacctctcctctacacttgatcatctctctctctttctctttctccttttctttctcttatctctttctctctctatggtcATGGCTGTGCAGGGGACCAGCCTGCTAGAGAACCCAGTTCAGGCGGTTCTGTACCTTAGAGAACTGACCACTATTGTTCAGAACCAACAGAGCCTCATCCAAACACAACGCCTGCGCATTGACGAACTGGACCTACGCGTGGATGAGCTGCTTGGGGAGAACAGGAATCTGCGTGAAGCAAGAGGTGTACAACCTCACCATCATCACCCAGACCACAACCCGAGCCTTCATTGTCATCATCCTCAGCATCAACATCCGTACCCACAAGACACCGGTTCTCTGCCCGCCCAGCCCATGCCTGAGGTTCATCCTGCTGAGACAGAAAAGTCCTCTCCTCAGCCCGCCAATCCGGAGGACATGCAGCTGGTACCGGCCCATTCCCAGCCACAGTCACTGAGCCCTTTGCAAGGCGAGGCCATCCTGGGCGAGGGGGAGGACAGCAGGGCCAGCATGGGCTGCCACACACTGGTTCCCCTGGTTCCCCTAGCTCCCCTCACTCCTACCACTTTCTGTCGCTCGCTGGCTCTCGCCAGGCAATCAGAGAGTCAGACAATACTACATCAGTTCTGTTGTCCTGCTCCAGAGGCTCCAGAGGCTGCTCTCACTGGCTCCTCCAGTGATGGGCAGCTGCTAGGTCTGGAGGGCGGGACTTCCTCCAgcagacaggaaggagaggggtCAGTAGGTGTGGCTCGTAGAGAAGGACCCAGCGACTATGAACTTGCCCTGGAGAACAAGaccaaacagatAGAGGAGTTGGAGCTGAGGTACGGTGGTCACCTGGTGTCGCGGCGCGCTGCGTGTCGTATTCAGACAGCGTTCCGTCAGTACCAGCTCAGTAAGAATTTCCAAAAGATCCGGAACTCTTTGTCAGAGAGCAAGTTGCCACGCCGCATTTCCCTGCGCCGGCCCAACCCCAGCCGGGGCCAGAACCCCACCCAGCGACACAGCTTCCTGTTAGAGAGTGGGGGCCCACCATTGCGCCCCAAaacacccccaccacccccctcACGTTCCACCTCCCTGCCGCCCTCAGCCTCCCCTGCCACGGGCCCTGGCCCCTCACTCACACAGCTGGAGGACTGCTTCTCAGAGCAGGTACGCTCGCTGGCCCATTCGATAGACGAGGCCCTGCGTGGGTGGAGCCTGTCGGAGGGGGTTGAGGGGGGGACAGGGGGGCTGTTGATGGACCCCGAGGTGTTTCGGGCGGCTGGTCAGAGTGCCTGCATGCCTCGCAGTGCCAGCTCCCTGCTCATGGCCTTCAGAGATGTCACCGTTCACATCGACACCAACAACTACACTGTCTCCACAActaccacctccacaaccaccactaccCACGGCAACACAGGGGCGGGAGGAAGCAGGCAAGCCTcaatggaagggggggggggagaggggggtggaggggtagggagagaaacAACAACCTCCCAGCTGGGGGGTGAGAAAGAGTTCCCTGCCCCCCCTCCCAGTGAGAAATTGTTGAAGGGAGGAGGGTTGAGGATGGAGTCAACTATgacagggcaggggagagagtTGGGGGGGCAGAGTGGCTCAGAGATACTCagttccacctctacctccacctcggCCCAGTCTAACCAGTATATCACTCAGTCCTCCTATCCCCAGTACCACCAGTATTCTACATACCCCCAGGCCCATCACCCCCAATCCCAGCCAGGGTCCCAGTCAGTCAGGGACCCCACCACTGAGGCCCTCCAGGCCCTGGTCCTCTCTCTGCCCAGAGACCGATGCCAGGACCCTGCCTCCTGCCGATCCCCCACACTCTCCACTGACACACACCGCAAACGACTCTACCGCATCGGACTCAACCTCTTCAACGTGAACCCAGAGAGAGGCATCCACTTCCTGATCACGCGTGGTTTCGTCCCAGACACGCCCATGGGCGTGGCCCACTTCCTGTTACAGAGGAAGGGCCTAAGCCGACAGATGATTGGAGAGTTCCTGGGGAACAGCAAGCTGCTCTTCAACAGAGATGTCCTGGACTGTGTGGTCGATGAGATGGACTTCTCTGGGATGGAGCTGGACGAGGCTCTGAGGAAGTTTCAGGCTCACATTAGAGTCCAGGGAGAGGCCCAGAAGGTGGAGAGACTCATTGAAGCTTTCAGtcagagGTATTGCATGTGTAATCCTGAGGTGGTGCAGCAGTTCCATAACCCAGACACCATCTTCATCCTGGCCTTTGCTGTGGTCCTCCTCAACACTGACATGTACTCCCCTAACATCAAACCTCAACGCAAGATGGGCCTCAACGATTTCATACGCAACCTACGAGGAGTGGACGACGGAGCAGACATCCCCAGGGAGATGGTGACAGGGATCTATGAGAGGACCCAGCAGAGAGAGCTACGCTCCAACGAAGACCACGTCACCTACGTCAGCCGTGTGGAACAGTCCATACTGGGCATGAAGACGATTCTGTCTGTGCCCCACCGTAGGCTGGTGTGCTGCTGTCGTCTGTTTGAGGTGGCAGACTTCAACAAACCCCTGAAACAGAAACTGGCCAACACCCAGAGAGAGGTGTTCCTGTTCAACGACCTCATACTTATCCTGAAGCTGTGTCCCAAGAAGAAGACTTCTGCCTCCTACACCTTCTGTAAAGCCATGGGTCTACTGGGCATGCAATTCCACCTCTTCAGTAACGAATactATGCTCATGGCATCACCATGTTGAGTCCGTTCTCGTCAGAGAAGAAGCAGATGGTGAGTTTCTGCTCCCCCAGTGGAGAGGAGCTCAGGAAGTTCACAGAGGAGCTACGAGAGTCCATCACTGAGGTCAACGAGATGGAGCAGATACACATTCaatGGGAGctgaagagagaacagggggtgCAGACTCACACCCCCCACACCAACGGAGGACAGATGGGCACACACTCAGCACACACAGGATCCCCcacagCCCAGAAAGATCTGTATGACAAGACTAGCAACAACACTGTGGAGGCTGCTGCAGACCTACCACATGACCCAGGCCAGCCCTGATAGGCTGCTTCAGACCTACCATGTGACCAGTCCTGACTCCACCCAACTGGCTCTGGCAGCACCCCTGGCAATGCTTAGCCCCACCCACCCTGGAGAACTCCGCCCAGACACCCTCATTCAATGCCAGCAGATC

Function

NR:

description
LOW QUALITY PROTEIN: IQ motif and SEC7 domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955648.1 False 4430 mRNA 0.54 15 75846541 75885181
XM_036955650.1 True 3536 mRNA 0.56 15 75847418 75885181

Neighbor

gene id symbol gene type direction distance location
LOC110501970 LOC106561217 coding downstream 144735 75688498 ~ 75701806 (-)
LOC118942024 NA coding downstream 182876 75661760 ~ 75663665 (-)
LOC110496199 LOC106561215 coding downstream 190377 75644341 ~ 75656164 (-)
LOC110496186 LOC106561212 coding downstream 238806 75595366 ~ 75607735 (-)
LOC118936395 rbm28 coding downstream 261405 75584557 ~ 75585136 (-)
ddx11 ddx11 coding upstream 16026 75901207 ~ 75915303 (-)
tnni1c LOC106561253 coding upstream 99975 75985156 ~ 75989573 (-)
miox miox coding upstream 181619 76066800 ~ 76069833 (-)
adm2b adm2 coding upstream 209141 76093170 ~ 76099909 (-)
ppp6r2b ppp6r2 coding upstream 250182 76135363 ~ 76168156 (-)
G185940 NA non-coding downstream 1227 75843775 ~ 75845314 (-)
G185985 NA non-coding downstream 3065 75842601 ~ 75843476 (-)
G185952 NA non-coding downstream 48432 75796577 ~ 75798109 (-)
G185951 NA non-coding downstream 50089 75796244 ~ 75796452 (-)
G185091 NA non-coding downstream 115231 75636331 ~ 75731310 (-)
G186006 NA non-coding upstream 2178 75887359 ~ 75887638 (-)
G186106 NA non-coding upstream 191237 76076418 ~ 76076724 (-)
G186112 NA non-coding upstream 198599 76083780 ~ 76084539 (-)
G186120 NA non-coding upstream 217002 76102183 ~ 76102549 (-)
G186121 NA non-coding upstream 217549 76102730 ~ 76103045 (-)
G184006 LOC106561202 other downstream 1113904 74730872 ~ 74732637 (-)
G183538 NA other downstream 1735750 74106883 ~ 74110791 (-)
G183096 NA other downstream 1852996 73993078 ~ 73993545 (-)
G182882 NA other downstream 2170118 73676212 ~ 73676423 (-)
G186197 LOC106561241 other upstream 388343 76273524 ~ 76293392 (-)
si:dkey-234i14.6 LOC106561240 other upstream 436626 76321757 ~ 76341834 (-)
LOC110496628 rabl2b other upstream 1284782 77166074 ~ 77171661 (-)

Expression


Co-expression Network