Gene
RNA
| Item | Value |
|---|---|
| gene id | ddx11 |
| gene name | ddx11 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 75901207 ~ 75915303 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ddx11 | Predicted to enable DNA helicase activity. Acts upstream of or within nucleolar chromatin organization; rRNA transcription; and regulation of transcription of nucleolar large rRNA by RNA polymerase I. Predicted to be located in several cellular components, including microtubule cytoskeleton; midbody; and nucleolus. Predicted to be active in nucleus. Used to study Warsaw breakage syndrome. Human ortholog(s) of this gene implicated in Warsaw breakage syndrome. Orthologous to several human genes including DDX11 (DEAD/H-box helicase 11). |
| description |
|---|
| ATP-dependent DNA helicase DDX11 isoform X1 |
| id | description |
|---|---|
| K11273 | DDX11, CHL1, CTF1; chromosome transmission fidelity protein 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021572081.2 | False | 3939 | mRNA | 0.51 | 28 | 75901207 | 75915303 |
| XM_021572088.2 | False | 3936 | mRNA | 0.51 | 28 | 75901207 | 75915303 |
| XM_021572101.2 | False | 3933 | mRNA | 0.51 | 28 | 75901207 | 75915303 |
| XM_036955654.1 | True | 3954 | mRNA | 0.51 | 28 | 75901207 | 75915303 |
75,898,000
75,900,000
75,902,000
75,904,000
75,906,000
75,908,000
75,910,000
75,912,000
75,914,000
75,916,000
75,918,000
75,920,000
75,922,000
75,924,000
75,926,000
75,928,000
NC_048566.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110496262 | LOC106561255 | coding | downstream | 16026 | 75846541 ~ 75885181 (-) |
| LOC110501970 | LOC106561217 | coding | downstream | 199401 | 75688498 ~ 75701806 (-) |
| LOC118942024 | NA | coding | downstream | 237542 | 75661760 ~ 75663665 (-) |
| LOC110496199 | LOC106561215 | coding | downstream | 245043 | 75644341 ~ 75656164 (-) |
| LOC110496186 | LOC106561212 | coding | downstream | 293472 | 75595366 ~ 75607735 (-) |
| tnni1c | LOC106561253 | coding | upstream | 69853 | 75985156 ~ 75989573 (-) |
| miox | miox | coding | upstream | 151497 | 76066800 ~ 76069833 (-) |
| adm2b | adm2 | coding | upstream | 179019 | 76093170 ~ 76099909 (-) |
| ppp6r2b | ppp6r2 | coding | upstream | 220060 | 76135363 ~ 76168156 (-) |
| LOC110496478 | kcp | coding | upstream | 273017 | 76188320 ~ 76231575 (-) |
| G186006 | NA | non-coding | downstream | 13569 | 75887359 ~ 75887638 (-) |
| G186001 | NA | non-coding | downstream | 24077 | 75876195 ~ 75877130 (-) |
| G185992 | NA | non-coding | downstream | 43529 | 75856463 ~ 75857678 (-) |
| G185940 | NA | non-coding | downstream | 55893 | 75843775 ~ 75845314 (-) |
| G185985 | NA | non-coding | downstream | 57731 | 75842601 ~ 75843476 (-) |
| G186106 | NA | non-coding | upstream | 161115 | 76076418 ~ 76076724 (-) |
| G186112 | NA | non-coding | upstream | 168477 | 76083780 ~ 76084539 (-) |
| G186120 | NA | non-coding | upstream | 186880 | 76102183 ~ 76102549 (-) |
| G186121 | NA | non-coding | upstream | 187427 | 76102730 ~ 76103045 (-) |
| G186123 | NA | non-coding | upstream | 191475 | 76106778 ~ 76107013 (-) |
| G186002 | NA | other | downstream | 23147 | 75877359 ~ 75878060 (-) |
| G184006 | LOC106561202 | other | downstream | 1168570 | 74730872 ~ 74732637 (-) |
| G183538 | NA | other | downstream | 1790416 | 74106883 ~ 74110791 (-) |
| G183096 | NA | other | downstream | 1907662 | 73993078 ~ 73993545 (-) |
| G186197 | LOC106561241 | other | upstream | 358221 | 76273524 ~ 76293392 (-) |
| si:dkey-234i14.6 | LOC106561240 | other | upstream | 406504 | 76321757 ~ 76341834 (-) |
| LOC110496628 | rabl2b | other | upstream | 1254660 | 77166074 ~ 77171661 (-) |
