lmf2a (lmf2)


Basic Information

Item Value
gene id lmf2a
gene name lmf2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 76053982 ~ 76066679 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021572340.2
AAGTGCCAAGATCAGATGGAAGTGCAGTGGCTTCAAACCAGCGCTCCCGGGAAGTCTAGTGTATATAAACATAATTGATGGGAACCCATGCCCACGCCTTTACCCCCATGTCACCATTTTGATCCACCGATAGGGACTTGTCTCCAGGTTATGTGAAAATCCCACACCGACTTCCCGTTCCACTACAGTAGATTACTGTCGCGTCCTGCAGAAACGGATAGAGAGGAGATTCCAGAAAGGgcctccacacagcagacatggGCTACATTACTCTGCCACGCCGCCTGTTCCTTTGGTGCATGGCTCTCATCTACATGGTCGCCTTCGTCTCCCTCTACCTGCAGATACCAGGCCTGTATGGAAATGATGGCCTGTTACCAGCGCGGTGGCAACTGCGGTACAGTGGTAAGGCTCTCTGGGagcagctcctctcctctcccaccttaCTGTGGCTCGCACCACGTCTGGGTCTTGACACCCAGACTGCCATGGAGCTGCTCTGCCTGctgggggcagcactgagcctgGCTGCTACAGTACTGGAATCACTCAGAGACAGCTTGGTGTTTCTATTTCTCTGGATCGTGTACCTGTCAATGTACCAGGTGGGACAGGTCTTCCTCTACTTCCAGTGGGACTCTCTTCTCCTGGAGACGGGGTTCCTCTGTGTGCTCATCGCCCCGGTGACGTCTTTGCGGGGGTGGCGAGCGGGCAGGGAGCACAACCCTGTGACCTTCTGGTTGGTCCGTTGGCTGCTGTTCAGACTGATGTTCGCCTCCGGAATCGTCAAACTCACCTCCCGCTGCCCTACCTGGTGGGGCCTCAcagCGCTGACATATCACTATGAGACCCAGTGTATCCCTACACCCTTGGCCTGGTTTGCCCACCAGCTGCCCGTCTGGTGGCATAAGCTGTCTGTGGTAGCCACCTTCACCATTGAGATCGCtgctccattcctcttcctcagCCCTCTACGACGACTTCGCCTCGGGGCCTTCTATATGCAGGTGGTACTGCAGGTGCTGATCATCCTGTCTGGAAACTATAACTTCTTCAACCTCCTGACTCTGACGATGTGTCTGTCTCTGCTGGATGACGAGCATATATACTTCTGGCTACGCAAGAAAtacactcctaaccctaaccaagGTTCCTCGTTGTGGTGGGCAGGGTTTGTGGTGGAGATCGCAGTCTGGGCTCTAATTGGCTTCGGAACGGTCACATGGTTTGACCTGCAGATCAACTGGGACAAGTGGACTGTCTCCTccaggacagTGTTTACCTTCCACCAGTTTAACCAGTTCCTGAAGACTGTCACCTTCCCCTCGGTCTGGCTGGGAGTACTGTCTCTCACCTGGGAACTAGTCTCTTCCAtgttcaggtgtgcgtgtgtggaAGGGTTCTTCAAGAGGTTTTTGGGTACAGTCCAGTGGACAGTGTTTGGTGCTGCTGCTGTCTCTATGTTTGCCATTAGTCTGGTCCCATTCACCTTCATAGAGTATGACAGTAACGCCAGTGTGTGGCCGGGGGTGCGTCGGGGTTATGATGCGGTCAGTCGTTACCAGCTGGTCAACTCCTACGGCCTGTTCAGACGCATGACTGGGGTGGGGGGCCGGCCCGAGGTGGTCATTGAGGGATCCATGGATAAAGTCACCTGGACGgAGATAGAATTTATGTATAAGCCAGGGAACCTCAGTGCCCCTCCCTCGGTCATCACCCCTCATCAACCACGGCTGGACTGGCAGATGTGGTTTGCAGCCCTGGGAACACATACGCACTCTCCCTGGTTCACCAGCCTAATATACAGACTGCTGCAGGGCAAGACGGACGtgattgAGCTCATCCAGTCAGATGTGTCTCAGTACCCGTTCCACCAGCAGCCTCCCACATACCTCAGAGCTCACCGCTACAAATACTGGTTCACTAAAACACTAGCTGATGGGTCGTATCCTCAGCGCTGGTGGAGGAGGGTGTACATAGAGGAGTTCTATCCCACAGTGTATCTGGGCGACACCTTCCTGGAGAGCATGCTTAGCCAGCATGGACTCaagGATAAGTCCCTCCCTCGGCGTGTGTCTGAGGCAGCTGTGCCCCAGGTGGTGAAGTGGGTGCGCTCTCAGGTGAGGGGTGTATCTGCACCCCTGCTGCTCTGGAGCCTCCTCTTCTGCAGTGTCACCCTCTGTCTGCTCCGGGGATTGCAGCTGGAAATTACACTCAAGACCAAACCTACTGCAGCCAAGGCTGAACCAAAACCCACAGCTCCACCCCACCACCCTGATGCTAAGGAGGCCAATTCCAACGACAAAGATGGTCTAGGACAAAGACAGGAGGAGGATCGGGAGGAGGTTGATACAGAAGAGGATGAGCGAAGGGGGGAAGAcgaggagagtgaaagagaagagaACGATGTAAGAGATGAActggaagaagaagaggacggagaagaagaggggagtgTTGACTGACTGTCTCAAGAAATAACGAGTTTCTCCTGACCCCTAAACACGGGATTTGGTAGCCCTCCCTTCCACTAACAGTCTCTGTGTCCAAGTGCTCAAGAGAAAGCTGCCTGTCTTGACTACTTGTCTGCCTTTCGCCAACAATAACCTTCTAACCAAAGAATTTTG

Function

symbol description
lmf2 Predicted to be involved in protein maturation. Located in membrane.

NR:

description
lipase maturation factor 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021572340.2 True 2627 mRNA 0.54 15 76053982 76066679

Neighbor

gene id symbol gene type direction distance location
c2cd5 LOC106561251 coding upstream 839 75993882 ~ 76053143 (+)
LOC110496319 b4galnt3 coding upstream 71376 75939769 ~ 75982606 (+)
LOC110496313 fkbp4 coding upstream 117985 75915637 ~ 75935997 (+)
LOC110496295 LOC106561258 coding upstream 151940 75894189 ~ 75902042 (+)
ptprq LOC106561260 coding upstream 211436 75798506 ~ 75842546 (+)
LOC110496459 LOC106561246 coding downstream 100894 76167573 ~ 76181555 (+)
LOC110496485 LOC106561242 coding downstream 199724 76266403 ~ 76272163 (+)
cd9a LOC106561241 coding downstream 206833 76273512 ~ 76293411 (+)
LOC110496527 sephs1 coding downstream 322850 76389529 ~ 76398538 (+)
LOC100135907 LOC100135907 coding downstream 464740 76531419 ~ 76537667 (+)
G185228 NA non-coding upstream 69581 75984050 ~ 75984401 (+)
G185211 NA non-coding upstream 197125 75856129 ~ 75856857 (+)
G185205 NA non-coding upstream 208407 75843761 ~ 75845575 (+)
G185204 NA non-coding upstream 210581 75842626 ~ 75843401 (+)
G185326 NA non-coding downstream 37444 76104123 ~ 76104424 (+)
G185352 ppp6r2 non-coding downstream 83856 76150535 ~ 76150879 (+)
G185367 NA non-coding downstream 120896 76187575 ~ 76187870 (+)
G185376 kcp non-coding downstream 136577 76203256 ~ 76204036 (+)
G185424 NA non-coding downstream 233656 76300335 ~ 76300615 (+)
LOC110496136 LOC106561223 other upstream 966575 74991655 ~ 75145608 (+)
LOC110496116 LOC106561204 other upstream 1167482 74828267 ~ 74890826 (+)
LOC110496107 LOC106561202 other upstream 1339868 74660359 ~ 74732682 (+)
G183361 NA other upstream 1518956 74529649 ~ 74535026 (+)
G182144 NA other upstream 2429464 73622536 ~ 73624518 (+)
G185462 chkb other downstream 367138 76433817 ~ 76434615 (+)
G185549 LOC106561235 other downstream 467699 76534378 ~ 76606975 (+)
G185718 NA other downstream 763734 76830413 ~ 76832500 (+)
LOC110502025 LOC106573403 other downstream 1080974 76863449 ~ 77160850 (+)

Expression


Co-expression Network